BAC Information

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BAC

Clone NameB6Ng01-238A06
Chromosome8 (Build37)
Map Location 19,759,188 - 19,760,345
singlet/doubletsinglet
Overlap gene4930467E23Rik
Upstream geneMcph1, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730
Downstream geneLOC100041567, LOC547150, LOC100040599, EG665822, 6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238A06.bB6Ng01-238A06.g
ACCGA048822GA048823
length1,1901,160
definitionB6Ng01-238A06.b B6Ng01-238A06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttttactctgagccccattttttaatggggctatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttagcattggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattaacagtgtcttttgctttacagaagcttagcaatttta
tgaggtcccatttgtcgattcttgatcttacagcacaagccattgctgtt
ctattcaggaattgttcccctgtgcccatatctccaaggcttttccccac
tttctcctctataagtttcagtgtctctggtttatgtggagttccttaat
ccacttagatttgaccttagtacaaggagataggaatggatcaattcgaa
ttcttctacatgttaacctccagttgtgccagcaccatttgttgaaaatg
ctgtcgttttttccactggatggttttagctcccttgtcaaaggtcaagt
gaccataggtgtgtgggtttatttctgggtcttcaattctattccattga
tctacatgtacgtcattgtactagtaccatgcagtttttatcacaattgc
tctgtagtacagctttagggtaggaatggtgattccaccagaggttcttt
tatccatgagaagagttgctatcctaggttttttgttattccagatgaat
ttgcagattgctctttctaattcgttgaagaattgagttggaattttaat
ggggattgcagtgaatctgtacattgcttttggcaagacagccattttta
ctatattgatcctgccaatccatgagcatgggagatctttcattcttctg
agatcttctttaatctctttcttcagagacttgaaattcttatcatacag
atctttcacttccttacttagagtcacgccaaggtatttatattatttgt
gactattgagaagggtgttgttcctctaattctttctcagcctgtttatc
tttgtgtaagaagaaaggccattgactgtttgagtaattttaatatccag
ctactcactgaagctgtcatcaagttagggggttcctctgggtgaataat
tggggtcacctataatactaaacatatcactctgcacaatgtgaattagc
cttctgtcaacttgtacacgtggagaattattccctccga
gaattcaaaattcaggtcataaagacaggagaggacacattttgtccttt
ctttttatgtctttccattttgtagagaatgatgatgtgaggtagcaaag
agcagaagataaaagcataacactaagcaggtccccatcaaagatttcta
gatactctgggccttttactcatcatgcagaaaggaagcagaggttgctg
aatatcagatagtgtccttagtgatgaagttggtctgaatacagaaacat
tttggggactataaatcaagattctgacattagcagacaggtgataaaat
gaataaaatcagtgaaactttaaatcaaaagtaacattgccaattttcct
tataggtgcgaggaaataaaccacctattttccgtacctttcctcggaag
catagaattcatgtgcttgaggctcctggtgacattgagccaactcattc
cacctgtgctgctgacagcagggctcctgctgatgctgagcaaaattctt
ccacctgtgctgctgtcaatggggctcctgctggtgttgagccaactact
tcttcccagtgtgctcctgactgtgaggatcctgcagtcattgagccacc
tcattccacctgtgctgctgacagcagggctcctgctgatgctgagccaa
attcttccacctgtgctgctgtcaatggggctcctgctgatgttgagcca
actacttcacaacttgttcctgacagtggtgctcctgctgatgttgagcc
agctacttcccagtgtgctcctgactgtgaggatcctgcagtcattgagc
caacacattccacctgtgctgctgacagcagggctcctgctgatgctgag
ccaaattcttccacctgtgctgctgtcaatggggctcctgctgatgatga
gccaacaacttcttcccagtgtgctcctgactgtgaggatcctgcagtca
ttgagccaactcattccacctgtgctgctgacagcagggctcctgctgat
gctgagccaattctttccacctgtgctgctgtcaatggggcctctgctga
tgttgagcactacttcaagttgtgcttctgactggtgaagatccttgcag
tcattgagccacctcatttccacctgggtgctgctgaagacagattctgc
tgacaataga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_19759188_19760345
seq2: B6Ng01-238A06.g_65_1224

seq1  GAATTCAAAATTCAGGTCATAAAGACAGGAGAGGACACATTTTGTCCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATTCAGGTCATAAAGACAGGAGAGGACACATTTTGTCCTTT  50

seq1  CTTTTTATGTCTTTCCATTTTGTAGAGAATGATGATGTGAGGTAGCAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATGTCTTTCCATTTTGTAGAGAATGATGATGTGAGGTAGCAAAG  100

seq1  AGCAGAAGATAAAAGCATAACACTAAGCAGGTCCCCATCAAAGATTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAGATAAAAGCATAACACTAAGCAGGTCCCCATCAAAGATTTCTA  150

seq1  GATACTCTGGGCCTTTTACTCATCATGCAGAAAGGAAGCAGAGGTTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTCTGGGCCTTTTACTCATCATGCAGAAAGGAAGCAGAGGTTGCTG  200

seq1  AATATCAGATAGTGTCCTTAGTGATGAAGTTGGTCTGAATACAGAAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAGATAGTGTCCTTAGTGATGAAGTTGGTCTGAATACAGAAACAT  250

seq1  TTTGGGGACTATAAATCAAGATTCTGACATTAGCAGACAGGTGATAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGACTATAAATCAAGATTCTGACATTAGCAGACAGGTGATAAAAT  300

seq1  GAATAAAATCAGTGAAACTTTAAATCAAAAGTAACATTGCCAATTTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAATCAGTGAAACTTTAAATCAAAAGTAACATTGCCAATTTTCCT  350

seq1  TATAGGTGCGAGGAAATAAACCACCTATTTTCCGTACCTTTCCTCGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTGCGAGGAAATAAACCACCTATTTTCCGTACCTTTCCTCGGAAG  400

seq1  CATAGAATTCATGTGCTTGAGGCTCCTGGTGACATTGAGCCAACTCATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAATTCATGTGCTTGAGGCTCCTGGTGACATTGAGCCAACTCATTC  450

seq1  CACCTGTGCTGCTGACAGCAGGGCTCCTGCTGATGCTGAGCAAAATTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTGCTGCTGACAGCAGGGCTCCTGCTGATGCTGAGCAAAATTCTT  500

seq1  CCACCTGTGCTGCTGTCAATGGGGCTCCTGCTGGTGTTGAGCCAACTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGTGCTGCTGTCAATGGGGCTCCTGCTGGTGTTGAGCCAACTACT  550

seq1  TCTTCCCAGTGTGCTCCTGACTGTGAGGATCCTGCAGTCATTGAGCCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCAGTGTGCTCCTGACTGTGAGGATCCTGCAGTCATTGAGCCACC  600

seq1  TCATTCCACCTGTGCTGCTGACAGCAGGGCTCCTGCTGATGCTGAGCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCACCTGTGCTGCTGACAGCAGGGCTCCTGCTGATGCTGAGCCAA  650

seq1  ATTCTTCCACCTGTGCTGCTGTCAATGGGGCTCCTGCTGATGTTGAGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCCACCTGTGCTGCTGTCAATGGGGCTCCTGCTGATGTTGAGCCA  700

seq1  ACTACTTCACAACTTGTTCCTGACAGTGGTGCTCCTGCTGATGTTGAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTCACAACTTGTTCCTGACAGTGGTGCTCCTGCTGATGTTGAGCC  750

seq1  AGCTACTTCCCAGTGTGCTCCTGACTGTGAGGATCCTGCAGTCATTGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTTCCCAGTGTGCTCCTGACTGTGAGGATCCTGCAGTCATTGAGC  800

seq1  CAACACATTCCACCTGTGCTGCTGACAGCAGGGCTCCTGCTGATGCTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACATTCCACCTGTGCTGCTGACAGCAGGGCTCCTGCTGATGCTGAG  850

seq1  CCAAATTCTTCCACCTGTGCTGCTGTCAATGGGGCTCCTGCTGATGATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTCTTCCACCTGTGCTGCTGTCAATGGGGCTCCTGCTGATGATGA  900

seq1  GCCAACAACTTCTTCCCAGTGTGCTCCTGACTGTGAGGATCCTGCAGTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACAACTTCTTCCCAGTGTGCTCCTGACTGTGAGGATCCTGCAGTCA  950

seq1  TTGAGCCAACTCATTCCACCTGTGCTGCTGACAGCAGGGCTCCTGCTGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCAACTCATTCCACCTGTGCTGCTGACAGCAGGGCTCCTGCTGAT  1000

seq1  GCTGAGCCAAATTCTTCCACCTGTGCTGCTGTCAATGGGGCTCCTGCTGA  1050
      |||||||||| |  |||||||||||||||||||||||||||  |||||||
seq2  GCTGAGCCAATTCTTTCCACCTGTGCTGCTGTCAATGGGGCCTCTGCTGA  1050

seq1  TGTTGAGCCAACTACTTCCAAGTGTGCTCCTGACT-GTGAGGATCC-TGC  1098
      ||||||||  |||||||| |  |||||| |||||| |||| ||||| |||
seq2  TGTTGAGC--ACTACTTCAAGTTGTGCTTCTGACTGGTGAAGATCCTTGC  1098

seq1  AGTCATTGAGCCAACTCA-TTCCACCT--GTGCTGCTGAAAGCAGGATTC  1145
      ||||||||||||| |||| ||||||||  |||||||||||  || |||| 
seq2  AGTCATTGAGCCACCTCATTTCCACCTGGGTGCTGCTGAAGACA-GATT-  1146

seq1  CTGCTGAC-ATAGA  1158
      |||||||| |||||
seq2  CTGCTGACAATAGA  1160