BAC Information

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BAC

Clone NameB6Ng01-239E08
Chromosome8 (Build37)
Map Location 8,885,145 - 9,058,053
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039836, Efnb2, 9430010O03Rik
Downstream geneTmem28, Lig4, Abhd13, Tnfsf13b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239E08.bB6Ng01-239E08.g
ACCGA049740GA049741
length1,087117
definitionB6Ng01-239E08.b B6Ng01-239E08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,056,977 - 9,058,053)(8,885,145 - 8,885,261)
sequence
gaattccacctcttgttctaaaggcagctagaagaaaactgccttccagg
cagctaggaggaggatcttaaagcccatgcccacagcgacatacttcttc
caacaagaccaacccactccaacaaggccacacctcctaaaagtgctgct
ccctgggccaagcatagtcagatcaccacatatcctaattagaaatgtaa
tattttatttatactgatttgatctgatcatgttaatatataatatcatt
ctgaatgtcttttatagaaaaggcagggctcatttggtttttttttaaag
gcagcattacaactaattagatagctttctaagtctttgaaatcctctct
tttaaatatcacactctcttttttttcacataatcccaacctttaaattc
taagtcagattaattctttaccaagtaaaatatcaagcttccaaagtcaa
acatgattttgaggtgggaggaatgctactctataaataaaatacctggt
gaaagtctaccacagggagaaagcgaaccttccatggttctactgtttgg
acgttttttactgtatttctcagcaagagcctttgctttgacttgttgct
tgttttgcttgccacctccatgtggccgctgactccagctgaaagcacca
gaattagaaacacttctcttatcaccacagtgtgcatcttccaatcctgg
tgtttcccatcccagatgtcccgtggaggtgtctgagagaagacaactgg
atcagtaagtttgcaaatataccagacaagtatgacacagactcgcatgt
tcaacaacttaacatgaagtacctcaggtctaggggtgatgaatgtgaaa
cgaaattgatgtttgtgaacatctaaaaacacacaagcatgccttcttca
tctcctgaggcagcaagtgacaccctgatcttcccatgtgtgggtacatg
cccatcgggaaatctgcttagttgttcttattgttgggaggctctgacgc
tcttcagaattgctttctagccaccatctatgagatccatcattctggtg
aatcatcattgtgatgccttgttgacatgaactaatc
aatgtcagttcccaaggaagcctttcttatgatctaaggtagctttatct
tccaaggcatccatgttttattatcctgttattttcttcttaaccgtgtg
tgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_9056977_9058053
seq2: B6Ng01-239E08.b_44_1130 (reverse)

seq1  GATTAG-TCATGTCCAACAGGCATCAC-ATGATGA-TCA-CAGAATGATG  46
      |||||| ||||||| |  ||||||||| ||||||| ||| ||||||||||
seq2  GATTAGTTCATGTCAACAAGGCATCACAATGATGATTCACCAGAATGATG  50

seq1  GATCTCATAGAT-GTGGCTAG-AAGCAA-TCTGAAGAGCGTCAGAGCCT-  92
      |||||||||||| |||||||| |||||| |||||||||||||||||||| 
seq2  GATCTCATAGATGGTGGCTAGAAAGCAATTCTGAAGAGCGTCAGAGCCTC  100

seq1  CCAACAATAAGAACAACTAAGCAGA-TTCCCGATGGGCATGTACCCACAC  141
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCAACAATAAGAACAACTAAGCAGATTTCCCGATGGGCATGTACCCACAC  150

seq1  AT-GGAAGATCAGGGTGTCACTTGCTGCCTCAGGAGATGAAGAAGGCATG  190
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAGATCAGGGTGTCACTTGCTGCCTCAGGAGATGAAGAAGGCATG  200

seq1  CTTGTGTGTTTTTAGATGTTCACAAACATCAATTTCGTTTCACATTCATC  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTGTTTTTAGATGTTCACAAACATCAATTTCGTTTCACATTCATC  250

seq1  ACCCCTAGACCTGAGGTACTTCATGTTAAGTTGTTGAACATGCGAGTCTG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTAGACCTGAGGTACTTCATGTTAAGTTGTTGAACATGCGAGTCTG  300

seq1  TGTCATACTTGTCTGGTATATTTGCAAACTTACTGATCCAGTTGTCTTCT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATACTTGTCTGGTATATTTGCAAACTTACTGATCCAGTTGTCTTCT  350

seq1  CTCAGACACCTCCACGGGACATCTGGGATGGGAAACACCAGGATTGGAAG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACACCTCCACGGGACATCTGGGATGGGAAACACCAGGATTGGAAG  400

seq1  ATGCACACTGTGGTGATAAGAGAAGTGTTTCTAATTCTGGTGCTTTCAGC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACTGTGGTGATAAGAGAAGTGTTTCTAATTCTGGTGCTTTCAGC  450

seq1  TGGAGTCAGCGGCCACATGGAGGTGGCAAGCAAAACAAGCAACAAGTCAA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCAGCGGCCACATGGAGGTGGCAAGCAAAACAAGCAACAAGTCAA  500

seq1  AGCAAAGGCTCTTGCTGAGAAATACAGTAAAAAACGTCCAAACAGTAGAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGGCTCTTGCTGAGAAATACAGTAAAAAACGTCCAAACAGTAGAA  550

seq1  CCATGGAAGGTTCGCTTTCTCCCTGTGGTAGACTTTCACCAGGTATTTTA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAAGGTTCGCTTTCTCCCTGTGGTAGACTTTCACCAGGTATTTTA  600

seq1  TTTATAGAGTAGCATTCCTCCCACCTCAAAATCATGTTTGACTTTGGAAG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGAGTAGCATTCCTCCCACCTCAAAATCATGTTTGACTTTGGAAG  650

seq1  CTTGATATTTTACTTGGTAAAGAATTAATCTGACTTAGAATTTAAAGGTT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATATTTTACTTGGTAAAGAATTAATCTGACTTAGAATTTAAAGGTT  700

seq1  GGGATTATGTGAAAAAAAAGAGAGTGTGATATTTAAAAGAGAGGATTTCA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTATGTGAAAAAAAAGAGAGTGTGATATTTAAAAGAGAGGATTTCA  750

seq1  AAGACTTAGAAAGCTATCTAATTAGTTGTAATGCTGCCTTTAAAAAAAAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTAGAAAGCTATCTAATTAGTTGTAATGCTGCCTTTAAAAAAAAA  800

seq1  CCAAATGAGCCCTGCCTTTTCTATAAAAGACATTCAGAATGATATTATAT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGAGCCCTGCCTTTTCTATAAAAGACATTCAGAATGATATTATAT  850

seq1  ATTAACATGATCAGATCAAATCAGTATAAATAAAATATTACATTTCTAAT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACATGATCAGATCAAATCAGTATAAATAAAATATTACATTTCTAAT  900

seq1  TAGGATATGTGGTGATCTGACTATGCTTGGCCCAGGGAGCAGCACTTTTA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATATGTGGTGATCTGACTATGCTTGGCCCAGGGAGCAGCACTTTTA  950

seq1  GGAGGTGTGGCCTTGTTGGAGTGGGTTGGTCTTGTTGGAAGAAGTATGTC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGTGGCCTTGTTGGAGTGGGTTGGTCTTGTTGGAAGAAGTATGTC  1000

seq1  GCTGTGGGCATGGGCTTTAAGATCCTCCTCCTAGCTGCCTGGAAGGCAGT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGGCATGGGCTTTAAGATCCTCCTCCTAGCTGCCTGGAAGGCAGT  1050

seq1  TTTCTTCTAGCTGCCTTTAGAACAAGAGGTGGAATTC  1077
      |||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTAGCTGCCTTTAGAACAAGAGGTGGAATTC  1087

seq1: chr8_8885145_8885261
seq2: B6Ng01-239E08.g_73_189

seq1  AATGTCAGTTCCCAAGGAAGCCTTTCTTATGATCTAAGGTAGCTTTATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAGTTCCCAAGGAAGCCTTTCTTATGATCTAAGGTAGCTTTATCT  50

seq1  TCCAAGGCATCCATGTTTTATTATCCTGTTATTTTCTTCTTAACCGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGCATCCATGTTTTATTATCCTGTTATTTTCTTCTTAACCGTGTG  100

seq1  TGTGTGTGTGTGTGTGT  117
      |||||||||||||||||
seq2  TGTGTGTGTGTGTGTGT  117