BAC Information

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BAC

Clone NameB6Ng01-240G18
Chromosome8 (Build37)
Map Location 74,366,722 - 74,367,884
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996
Downstream geneLOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3, Large
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240G18.bB6Ng01-240G18.g
ACCGA050598GA050599
length1,1641,186
definitionB6Ng01-240G18.b B6Ng01-240G18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaagtctttgattactgttttatatgaaattaaaataacactct
taaaatatgccacagtggagcaagaccaccaggacagcttaaatccatct
tgaaaaactctgtccagtataatacaggtaagtttaagagtaagtactct
attgattctatcccaatcataaaaagagttttgttcctgctagaatagaa
actaaggaaatcagatatgccaatagtagttatatcctttcttaatttgc
tgtcaaacatttttaggattcagaattatttaaggaattgtttctaagaa
atttaaaattgtatcacctgaaatatgtttgtttatttaaaatgaactac
ggatatatgtagtgtctttttataagtaaaaagatttttcacctattcca
cagtgtagatcctctctagttaaataacagcaagttgactttggtatgaa
atggatttttacttaatttttataattgatatatattactgactacatat
tgttgtatgtgtatcggtgtccataaaatgtggtcatgttaagcaaacaa
aaatagagtatttaattactttcactatgttttgaggacttaatgtcagt
acggcactccgaatttttttttccttcataggatttctgaaattccactt
atttgataattcatacgttatcttctggttatttttatttgtcttccatt
taatgtgaatatcctgatacaataaataactggctcaattaggaactttt
aaaaaactgaatggtgtgtgagttttgtaggtagtgctatggaataaaaa
ctgccattctcagtattctatgcaacagcctccatatgggctactctgac
agcaccttttccctgtagttctattagttaccaaatttatagtgatactt
ggtttacatgctacagacataatttgcagaaaaaacttgccacagtagaa
ggaaggttgaggaaaatcctatcatcctgtagtgcatggcatggaaaggc
ctattggtttcagtctgaatatgattcttacagttggggagaaataaaac
atttttttcagcaactgtaccacagcatctcttcccactactttgccttt
gaaaactcagcagagaatagtgttagaggaatctaaatgcctgtctcaca
taagcatgccatca
gaattcttgggcaccgctgggttctacagactttggatacctgggtttac
cacaatggctgcccccttgtaccccctgaccaaagaaagtggagaattct
gatggtcatcagaacatcagagagcctttgaaaatattaaagaggccctg
ttgactgtgccagccttggcattgccagatctaaccaaaccctttatcct
ctatgttgatgagagggcaggggtggccagaggagtttttactcaggttc
tagggccatagaaagggcccgtgacatatctaaaaagttggacccagtgg
ccagcggatggcccacatgtttaaagaccgttgctgcagtagccttactc
gttaaggatgctgacaaatgaactttgggacagcaaataactgtggtagc
cccccactcttgaaagcattatccaccagcccccagaccaatggatgaca
aacgcctggatgacccactcactaccagagtctgttgctgactgaatggt
tcatgtttgctcctcctgctatcctcaatcctgctaccttcctgcctgaa
acggatgactcctcacctgtttactgctgtgcggacatccttacggaaga
aactgggacccctttccccttggggtcgactcctctacccctgcatggga
tacgagtcgtccccagagctctggctttccccgaataaagcctcgtgtgg
tttgcatcaagcttggtctctcgtgagtacttgggggtctgctattatcc
cgagacttgagtgagggtctcccttcagaggtctttcagtgtagcctcag
ctgaagttgatggcccaggactgaaggggtcatgcaaagatttgaggctt
gggaccatgaagagagcctatgaaaggctattggtgaagcctagttggga
gtggaacaccctagtgtattggaggtgccagtatcatgggataatcatca
agaacagcagccgtagtgaagtggatcaaccttgagcttagagtactaag
agtgcagagctagagaagtgatgccagcccctaggaggacctcaagatca
ggtggaatccagacactggaacagaagctgtaacatggaactggcttggg
agacctcaaggacgtaaggtgccagagccatggggataccaatgcctggg
gaaaggctgtgctctatacacaggatatagatgtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_74366722_74367884
seq2: B6Ng01-240G18.b_44_1207 (reverse)

seq1  TGATCGCATGCTTATGTGAAGACAGCCATTTAGATTCCTCT-ACACTATT  49
      |||| ||||||||||||| |||||| ||||||||||||||| ||||||||
seq2  TGATGGCATGCTTATGTG-AGACAGGCATTTAGATTCCTCTAACACTATT  49

seq1  CTCTGGCTGGTGTTTTCCAAAGGCAAAGTAGGTGGGAGAGATGCTGTGGT  99
      |||| ||| | ||||| ||||||||||||||  || ||||||||||||| 
seq2  CTCT-GCT-GAGTTTT-CAAAGGCAAAGTAGTGGGAAGAGATGCTGTGG-  95

seq1  TACAGTTGCTG-AAAAAATGTTTTATTTCTCCC--ACTGTAAGAATCATA  146
      ||||||||||| |||||||||||||||||||||  |||||||||||||||
seq2  TACAGTTGCTGAAAAAAATGTTTTATTTCTCCCCAACTGTAAGAATCATA  145

seq1  TTCAGACTG-AACCAATAGGCCCTTCCATGCCATGCACTACAGGATGATA  195
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  TTCAGACTGAAACCAATAGGCCTTTCCATGCCATGCACTACAGGATGATA  195

seq1  GGATTTT-CTCAACCTTCCTTCTACTGTGGC-AGTTTTTTCTGCAAATTA  243
      ||||||| ||||||||||||||||||||||| ||||||||||||||||||
seq2  GGATTTTCCTCAACCTTCCTTCTACTGTGGCAAGTTTTTTCTGCAAATTA  245

seq1  TGTCTTGTAGCATGTAAACCAAGTATCACTATAAATTTGGTAACTAATAG  293
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTC-TGTAGCATGTAAACCAAGTATCACTATAAATTTGGTAACTAATAG  294

seq1  AACTACAGGGAAAAGGTGCTGTCAGAGTAGCCCATATGGAGGCTGTTGCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACAGGGAAAAGGTGCTGTCAGAGTAGCCCATATGGAGGCTGTTGCA  344

seq1  TAGAATACTGAGAATGGCAGTTTTTATTCCATAGCACTACCTACAAAACT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATACTGAGAATGGCAGTTTTTATTCCATAGCACTACCTACAAAACT  394

seq1  CACACACCATTCAGTTTTTTAAAAGTTCCTAATTGAGCCAGTTATTTATT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACCATTCAGTTTTTTAAAAGTTCCTAATTGAGCCAGTTATTTATT  444

seq1  GTATCAGGATATTCACATTAAATGGAAGACAAATAAAAATAACCAGAAGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGGATATTCACATTAAATGGAAGACAAATAAAAATAACCAGAAGA  494

seq1  TAACGTATGAATTATCAAATAAGTGGAATTTCAGAAATCCTATGAAGGAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGTATGAATTATCAAATAAGTGGAATTTCAGAAATCCTATGAAGGAA  544

seq1  AAAAAAATTCGGAGTGCCGTACTGACATTAAGTCCTCAAAACATAGTGAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATTCGGAGTGCCGTACTGACATTAAGTCCTCAAAACATAGTGAA  594

seq1  AGTAATTAAATACTCTATTTTTGTTTGCTTAACATGACCACATTTTATGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTAAATACTCTATTTTTGTTTGCTTAACATGACCACATTTTATGG  644

seq1  ACACCGATACACATACAACAATATGTAGTCAGTAATATATATCAATTATA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCGATACACATACAACAATATGTAGTCAGTAATATATATCAATTATA  694

seq1  AAAATTAAGTAAAAATCCATTTCATACCAAAGTTAACTTGCTGTTATTTA  743
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAAATTAAGTAAAAATCCATTTCATACCAAAGTCAACTTGCTGTTATTTA  744

seq1  ACTAGAGAGGATCTACACTGTGGAATAGGTGAAAAATCTTTTTACTTATA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAGAGGATCTACACTGTGGAATAGGTGAAAAATCTTTTTACTTATA  794

seq1  AAAAGACACTACATATATCCGTAGTTCATTTTAAATAAACAAACATATTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACACTACATATATCCGTAGTTCATTTTAAATAAACAAACATATTT  844

seq1  CAGGTGATACAATTTTAAATTTCTTAGAAACAATTCCTTAAATAATTCTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGATACAATTTTAAATTTCTTAGAAACAATTCCTTAAATAATTCTG  894

seq1  AATCCTAAAAATGTTTGACAGCAAATTAAGAAAGGATATAACTACTATTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTAAAAATGTTTGACAGCAAATTAAGAAAGGATATAACTACTATTG  944

seq1  GCATATCTGATTTCCTTAGTTTCTATTCTAGCAGGAACAAAACTCTTTTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATCTGATTTCCTTAGTTTCTATTCTAGCAGGAACAAAACTCTTTTT  994

seq1  ATGATTGGGATAGAATCAATAGAGTACTTACTCTTAAACTTACCTGTATT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTGGGATAGAATCAATAGAGTACTTACTCTTAAACTTACCTGTATT  1044

seq1  ATACTGGACAGAGTTTTTCAAGATGGATTTAAGCTGTCCTGGTGGTCTTG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGACAGAGTTTTTCAAGATGGATTTAAGCTGTCCTGGTGGTCTTG  1094

seq1  CTCCACTGTGGCATATTTTAAGAGTGTTATTTTAATTTCATATAAAACAG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTGTGGCATATTTTAAGAGTGTTATTTTAATTTCATATAAAACAG  1144

seq1  TAATCAAAGACTTTGAATTC  1163
      ||||||||||||||||||||
seq2  TAATCAAAGACTTTGAATTC  1164