BAC Information

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BAC

Clone NameB6Ng01-241B13
Chromosome8 (Build37)
Map Location 6,446,566 - 6,561,213
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC623409, LOC669429, LOC100040360
Downstream geneEG665127, EG546032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241B13.bB6Ng01-241B13.g
ACCGA051099GA051100
length1,1181,095
definitionB6Ng01-241B13.b B6Ng01-241B13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,446,566 - 6,447,325)(6,560,114 - 6,561,213)
sequence
gaattcatgaaattctttggcaaatggaaggaaatagaaaatatcctgag
tgaggtaacccagtcacaacagaccacacattgtatacactcactgaaac
gtgaatattagcccaaaagctcagaatacccaagataaaattcatagact
acagaaagctcaaaaagaaggaagagcaaaatgtgggtactttggtcttt
cattaaaggggaaacataatactcatggaagcaaatatggagacaaagac
tgaatgaaagcaaatatggagcagagactgaatgaaaggccatccagaga
ctgccctacctgaggatccatcccatatacagtcaccaaatgcagacact
attgtggatgccaagaagtgcatcttggcaggagcctgatattgttgtcc
cctgaaagactctgccaaagcctgataaatacagaagtggatgctcatag
ccaaccattgaagtgagcatagggtttccaaatgcaggagtttgagaaat
gattgaaggagctgaaggggtttgcaaccccataggaagaacaacaatat
caaccaaccagataccccagagctcccagggactaaatcaccaaccaaag
aatacacatggagggacccatggttccagcctcatatgtagcagaggatg
gccttgttgggcatcaatgggagaaaggatccttagtcctgtgaagggtc
aatgccccagtatagtgactgtgagggcagggatttgggagtgtgtgggt
gattgctggaacaccctcatagaaacaggaggaggaggaggggatagggt
gcttccagtggggaaactgggaaaggggataacatttgaaatgtaaataa
ataaaatatccaacaaaaaatgaagcaaaaagaaaaaaagaatttgtttt
tagcaatccttgctaaatagaaacttgttcattgtatacttgtgagacct
actaataattattgaagctgttagctttataaaatttagtatcatacatt
tgatatttttcccttttaggaacatagtatcaatttttcttaattcattt
taatttggatatcaaattagcttatttaagtagctttacctgcaggagct
tcagaatgaggcaatttt

gaattctctcttgattgacacctgttaaatcagatagcaggaatgtgatg
ctagcttgcttcatgtcacagggaaaaccctccataagtgatatctgtta
ttagtgaatgaactgatggttggttggagaaatctgctgtcagcaaaatt
ctttccatgtttatggaataaaagaaaacgttggctttgaacaggaaaca
ttttctagaatgaatttgtaagagatgagggcttttgtctttaagatcat
cagggaagtttgcaacaacaagaaacatgaacagtcaagaaattcatcag
gagagagaaaaccaagacagtgggtctggaaggttgtggacaaagactcc
tcagcaaaatggcacaaatagtgctagacacatttctgtcaaatgcattg
ttcttcatgattagaagcatataattaattcttatggcttcatgggaatt
ttttaattgagaagactgttaaagtttttttaatcatgtgcataggatag
attcctgaacccagaggagaaagaatcttttgtaaacatggcactgtggc
ttcaagtgtgtttgcagagactgtttgcaaacatgaatgaatgaggaagg
agggtgtgtgtggatttgttaagagcaacaatgagatggaaaaagttgag
gcagaagatctgggacaggaagcagtattgtttttgttcatggatgtcca
gcttggatatttggctgcagttatgcactgtatcaatgacactgtaggat
accctgaactttctcttaatgcttaattaatgagtaagtgcagataacag
ataatggccagttccatttcttgggaaataaataagtttacaacactacc
ttagagaaaatgagcatttatctctgtgttgacagagattagtttaattt
gattaactcataaaacaatagtatcataatctgaaatccctatcaaatat
agcttcccttctgatccctgacacattggatattatgttagtggtcaaac
gactgtgaaaaagtgattaaagatctggatgtcagagaatccattatctc
tgggttctctgcattcagtctggtgtagtccttgacatgcagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_6446566_6447325
seq2: B6Ng01-241B13.b_416_1163

seq1  CATCTTGGCAGGAGCCTGATATTGTTGTCCCCTGAAAGACTCTGCCAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGGCAGGAGCCTGATATTGTTGTCCCCTGAAAGACTCTGCCAAAG  50

seq1  CCTGATAAATACAGAAGTGGATGCTCATAGCCAACCATTGAAGTGAGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATAAATACAGAAGTGGATGCTCATAGCCAACCATTGAAGTGAGCAT  100

seq1  AGGGTTTCCAAATGCAGGAGTTTGAGAAATGATTGAAGGAGCTGAAGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCCAAATGCAGGAGTTTGAGAAATGATTGAAGGAGCTGAAGGGG  150

seq1  TTTGCAACCCCATAGGAAGAACAACAATATCAACCAACCAGATACCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAACCCCATAGGAAGAACAACAATATCAACCAACCAGATACCCCAG  200

seq1  AGCTCCCAGGGACTAAATCACCAACCAAAGAATACACATGGAGGGACCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCAGGGACTAAATCACCAACCAAAGAATACACATGGAGGGACCCA  250

seq1  TGGTTCCAGCCTCATATGTAGCAGAGGATGGCCTTGTTGGGCATCAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCAGCCTCATATGTAGCAGAGGATGGCCTTGTTGGGCATCAATGG  300

seq1  GAGAAAGGATCCTTAGTCCTGTGAAGGGTCAATGCCCCAGTATAGTGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGATCCTTAGTCCTGTGAAGGGTCAATGCCCCAGTATAGTGACT  350

seq1  GTGAGGGCAGGGATTTGGGAGTGTGTGGGTGATTGCTGGAACACCCTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGCAGGGATTTGGGAGTGTGTGGGTGATTGCTGGAACACCCTCAT  400

seq1  AGAAACAGGAGGAGGAGGAGGGGATAGGGTGCTTCCAGTGGGGAAACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGGAGGAGGAGGAGGGGATAGGGTGCTTCCAGTGGGGAAACTGG  450

seq1  GAAAGGGGATAACATTTGAAATGTAAATAAATAAAATATCCAACAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGGATAACATTTGAAATGTAAATAAATAAAATATCCAACAAAAAA  500

seq1  TGAAGCAAAAAGAAAAAAAGAATTTGTTTTTAGCAAATCCTTGCTAAATA  550
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGAAGCAAAAAGAAAAAAAGAATTTGTTTTTAGC-AATCCTTGCTAAATA  549

seq1  GAAACTTGTTCATTTGTATAC-TGTGAGACCTACTAAATAATTATTGAAA  599
      |||||||||||| |||||||| ||||||||||||| ||||||||||| ||
seq2  GAAACTTGTTCA-TTGTATACTTGTGAGACCTACT-AATAATTATTG-AA  596

seq1  GCTGTTAGCTTTATAAAATTTAGTATCATACAATTTGATATTTTT-CCTT  648
      ||||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  GCTGTTAGCTTTATAAAATTTAGTATCATAC-ATTTGATATTTTTCCCTT  645

seq1  TTAGGAACATAGTATCATTTTTCTTTAATTCATTTTAATTTGGAATATTC  698
      ||||||||||||||||| ||||  ||||||||||||||||||| ||||  
seq2  TTAGGAACATAGTATCAATTTTTCTTAATTCATTTTAATTTGG-ATAT--  692

seq1  AAAATTAGCTTAATTTTAAGTAGCTTTTAAACTTGGAAGGAGCTTCTAGA  748
       |||||||||||  |||||||||||||   || | | ||||||||| |||
seq2  CAAATTAGCTTA--TTTAAGTAGCTTT---ACCT-GCAGGAGCTTC-AGA  735

seq1  TAGA-GCAATTTT  760
        || ||||||||
seq2  ATGAGGCAATTTT  748


seq1: chr8_6560114_6561213
seq2: B6Ng01-241B13.g_67_1161 (reverse)

seq1  CATCTTCCATGTC-AGGACTACA-CAGACTGAATGCAGAACCACCCAGAG  48
      |||| | |||||| ||||||||| |||||||||||||| |  ||||||||
seq2  CATC-TGCATGTCAAGGACTACACCAGACTGAATGCAG-AGAACCCAGAG  48

seq1  ATTAAATGGGATTCTCTGACATTCCAAGATCTTTAATCACTTTTTCACAG  98
      ||  ||| ||||||||||||||  | ||||||||||||||||||||||||
seq2  AT--AAT-GGATTCTCTGACAT--CCAGATCTTTAATCACTTTTTCACAG  93

seq1  TCGTTTTGACCACTTAACATAATATCCAAAGGTGTCAGGGATCAGAA-GG  147
      ||| ||||||||| ||||||||||||| || |||||||||||||||| ||
seq2  TCG-TTTGACCAC-TAACATAATATCC-AATGTGTCAGGGATCAGAAGGG  140

seq1  AAGCTATATTTGATA-GGATTTCAGATTATGATACTATTGTTTTATGAGT  196
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAGCTATATTTGATAGGGATTTCAGATTATGATACTATTGTTTTATGAGT  190

seq1  TAATCAAATT-AACTAATCTCTGTCAACACAGAGATAAATGCTCATTTTC  245
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAATCAAATTAAACTAATCTCTGTCAACACAGAGATAAATGCTCATTTTC  240

seq1  TCTAAGGTAGTGTTGTAAACTTATTTATTTCCCAAGAAATGGAACTGGCC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGTAGTGTTGTAAACTTATTTATTTCCCAAGAAATGGAACTGGCC  290

seq1  ATTATCTGTTATCTGCACTTACTCATTAATTAAGCATTAAGAGAAAGTTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTGTTATCTGCACTTACTCATTAATTAAGCATTAAGAGAAAGTTC  340

seq1  AGGGTATCCTACAGTGTCATTGATACAGTGCATAACTGCAGCCAAATATC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTATCCTACAGTGTCATTGATACAGTGCATAACTGCAGCCAAATATC  390

seq1  CAAGCTGGACATCCATGAACAAAAACAATACTGCTTCCTGTCCCAGATCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGGACATCCATGAACAAAAACAATACTGCTTCCTGTCCCAGATCT  440

seq1  TCTGCCTCAACTTTTTCCATCTCATTGTTGCTCTTAACAAATCCACACAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCAACTTTTTCCATCTCATTGTTGCTCTTAACAAATCCACACAC  490

seq1  ACCCTCCTTCCTCATTCATTCATGTTTGCAAACAGTCTCTGCAAACACAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCTTCCTCATTCATTCATGTTTGCAAACAGTCTCTGCAAACACAC  540

seq1  TTGAAGCCACAGTGCCATGTTTACAAAAGATTCTTTCTCCTCTGGGTTCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCCACAGTGCCATGTTTACAAAAGATTCTTTCTCCTCTGGGTTCA  590

seq1  GGAATCTATCCTATGCACATGATTAAAAAAACTTTAACAGTCTTCTCAAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTATCCTATGCACATGATTAAAAAAACTTTAACAGTCTTCTCAAT  640

seq1  TAAAAAATTCCCATGAAGCCATAAGAATTAATTATATGCTTCTAATCATG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATTCCCATGAAGCCATAAGAATTAATTATATGCTTCTAATCATG  690

seq1  AAGAACAATGCATTTGACAGAAATGTGTCTAGCACTATTTGTGCCATTTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAATGCATTTGACAGAAATGTGTCTAGCACTATTTGTGCCATTTT  740

seq1  GCTGAGGAGTCTTTGTCCACAACCTTCCAGACCCACTGTCTTGGTTTTCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGAGTCTTTGTCCACAACCTTCCAGACCCACTGTCTTGGTTTTCT  790

seq1  CTCTCCTGATGAATTTCTTGACTGTTCATGTTTCTTGTTGTTGCAAACTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTGATGAATTTCTTGACTGTTCATGTTTCTTGTTGTTGCAAACTT  840

seq1  CCCTGATGATCTTAAAGACAAAAGCCCTCATCTCTTACAAATTCATTCTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATGATCTTAAAGACAAAAGCCCTCATCTCTTACAAATTCATTCTA  890

seq1  GAAAATGTTTCCTGTTCAAAGCCAACGTTTTCTTTTATTCCATAAACATG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTTTCCTGTTCAAAGCCAACGTTTTCTTTTATTCCATAAACATG  940

seq1  GAAAGAATTTTGCTGACAGCAGATTTCTCCAACCAACCATCAGTTCATTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAATTTTGCTGACAGCAGATTTCTCCAACCAACCATCAGTTCATTC  990

seq1  ACTAATAACAGATATCACTTATGGAGGGTTTTCCCTGTGACATGAAGCAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATAACAGATATCACTTATGGAGGGTTTTCCCTGTGACATGAAGCAA  1040

seq1  GCTAGCATCACATTCCTGCTATCTGATTTAACAGGTGTCAATCAAGAGAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCATCACATTCCTGCTATCTGATTTAACAGGTGTCAATCAAGAGAG  1090

seq1  AATTC  1100
      |||||
seq2  AATTC  1095


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