BAC Information

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BAC

Clone NameB6Ng01-241E14
Chromosome8 (Build37)
Map Location 5,112,181 - 5,228,183
singlet/doubletdoublet
Overlap geneLOC434275
Upstream geneCd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2
Downstream geneLOC623409, LOC669429, LOC100040360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241E14.bB6Ng01-241E14.g
ACCGA051243GA051244
length1,1771,170
definitionB6Ng01-241E14.b B6Ng01-241E14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,112,181 - 5,113,297)(5,227,008 - 5,228,183)
sequence
gaattctcacttgaggaataccgaatgaatgaggaccacctgaaaaaatg
tttagcatccttagtcatcagagaaatgcaaatcaaaacaaccctgagac
tccaccttacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
gaattgcaagttgtacagccactctggaaatcagtctggctgttcctcag
aaaattggacatagtactattggaggatccagcaatacttctcctgggca
tatatccagaagatgttccaaccggtaagaaggacacatgctccactatt
taatagcagccttatttataatatccagaacccagatgtccctcaacaga
ggaatggatacagaaaatgtggtacatttacacagtggagtactagtctg
ctattaaaaagaatgaatttatgaaattcctgggcaaatggatggacctg
gagggtatcatcctgagtgaggtaacccaattacaaaagaactcacataa
tatgtactcactgataagtggttaggagaatattcttcaatgattttgtt
aaaaatatttcctgggaagaaggtatattcttttgttttgggatgaaatg
ttctatagatatctgttcaactcatttcgactctttcaaataacacattg
gtatgatatataaggcatatgaatatatatataaggttataaaattatag
attagattagagattacagaggaatgagatatgtaatttaatgctcagat
gttgacttttatatagatagactaagagtaaatatcgttactgtctctgt
aatttaggacatggtattttaacccaagtataaaatgactaaagctgaca
ataccatgtgaaacattttgggaattcttaagctttgtttcatgtatgca
tttccaaaatgaataagtatctgtctcacacagagaggggtgggaccact
atatagctagccacaaaaggacctgatgatcttattttcaaagaagaaag
cttacattttgaagtctccttgtgaatttcttttcttcttttctgaagaa
tctaacaaaaaagaaacaaaattctcagaatgtaagttaggacctgaaat
actaaacgaacgaaaactccacttcag
gaattctcattaggtactcattaaacttccataccttaggacaaccttga
gagattcattgacattaatgagaataactcttattattgatcatggaatt
tttatgcatgcaacagagatagtattgacagctgtaaaaaagaaaataac
acaattagaattttatattccactaccaaggaaaactacacaattgttga
cttgttaaaatgaaactgtcttcagaaatgccacatgtagaatgacaaat
atttgaaagaaaaaaaagcttttagacattcaaaattattgaaatgtttg
acaataatgaattcagacttttagaatgtgaataaatatctgtatttttg
aaaaataattatcacaattactttgcaacaaatgcacatttctgaatata
ttttgttaggaatacagttgataaattaacaaagcaatagtcttacatat
ttctctctaatttattttgtgttgtttatgttatttaaaattcatccgtg
ctaaaaagtgattgccatggagaaaaacataaatatcaaataaaaccagt
agtcataaaagcatgcccggttacgttcttttcctgagcatgagttatta
aatattttaataaaagattatctaaagcctgtttctatttaatgtgcaat
tgaaatttcccaagacttctagtgaacctaaccatgaatattatggtctt
ttgtgaatttctttgtgtttttcatctgaattttcctgatatacagaaca
tcatttctttctaagtccttttgaggaacaaagtgtgggaagccacatgt
gcctttgcagggtggcgctggctactgttggccaccacgcatacataggc
agtaaacttttttgccaagatgaggttttgagaatttaaccaatcagatg
agagacagttaaccaatcagatgaagacagttaacccaatcagatgagag
acaagttaaccaatcagatgtaggcatgcaaatgaggtggtaagcataac
caatccggtggtgaagacacgcctctcctaggcctatatagcagcacaga
tctgggctgggggtctcttcacctctgcatcagctctcccaaataacgtg
tggcagaagatcttgttgcagctcatctgctggcagtcagagcgtgtgcc
agaacaagagagttagagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_5112181_5113297
seq2: B6Ng01-241E14.b_102_1220

seq1  CCTTAGTCATCAGAGAAATGCAAATCAAAACAACCCTGAGACTCCACCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTCATCAGAGAAATGCAAATCAAAACAACCCTGAGACTCCACCTT  50

seq1  ACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTG  100

seq1  GCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGAATTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGAATTGCA  150

seq1  AGTTGTACAGCCACTCTGGAAATCAGTCTGGCTGTTCCTCAGAAAATTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTACAGCCACTCTGGAAATCAGTCTGGCTGTTCCTCAGAAAATTGG  200

seq1  ACATAGTACTATTGGAGGATCCAGCAATACTTCTCCTGGGCATATATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTACTATTGGAGGATCCAGCAATACTTCTCCTGGGCATATATCCA  250

seq1  GAAGATGTTCCAACCGGTAAGAAGGACACATGCTCCACTATTTAATAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGTTCCAACCGGTAAGAAGGACACATGCTCCACTATTTAATAGCA  300

seq1  GCCTTATTTATAATATCCAGAACCCAGATGTCCCTCAACAGAGGAATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTATTTATAATATCCAGAACCCAGATGTCCCTCAACAGAGGAATGGA  350

seq1  TACAGAAAATGTGGTACATTTACACAGTGGAGTACTAGTCTGCTATTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAAATGTGGTACATTTACACAGTGGAGTACTAGTCTGCTATTAAA  400

seq1  AAGAATGAATTTATGAAATTCCTGGGCAAATGGATGGACCTGGAGGGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGAATTTATGAAATTCCTGGGCAAATGGATGGACCTGGAGGGTAT  450

seq1  CATCCTGAGTGAGGTAACCCAATTACAAAAGAACTCACATAATATGTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGAGTGAGGTAACCCAATTACAAAAGAACTCACATAATATGTACT  500

seq1  CACTGATAAGTGGTTAGGAGAATATTCTTCAATGATTTTGTTAAAAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATAAGTGGTTAGGAGAATATTCTTCAATGATTTTGTTAAAAATAT  550

seq1  TTCCTGGGAAGAAGGTATATTCTTTTGTTTTGGGATGAAATGTTCTATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGGAAGAAGGTATATTCTTTTGTTTTGGGATGAAATGTTCTATAG  600

seq1  ATATCTGTTCAACTCATTTCGACTCTTTCAAATAACACATTGGTATGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGTTCAACTCATTTCGACTCTTTCAAATAACACATTGGTATGATA  650

seq1  TATAAGGCATATGAATATATATATAAGGTTATAAAATTATAGATTAGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGCATATGAATATATATATAAGGTTATAAAATTATAGATTAGATT  700

seq1  AGAGATTACAGAGGAATGAGATATGTAATTTAATGCTCAGATGTTGACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTACAGAGGAATGAGATATGTAATTTAATGCTCAGATGTTGACTT  750

seq1  TTATATAGATAGACTAAGAGTAAATATCGTTACTGTCTCTGTAATTTAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAGATAGACTAAGAGTAAATATCGTTACTGTCTCTGTAATTTAGG  800

seq1  ACATGGTATTTTAACCCAAGTATAAAATGACTAAAGCTGACAATACCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTATTTTAACCCAAGTATAAAATGACTAAAGCTGACAATACCATG  850

seq1  TGAAACATTTTGGGAATTCTTAAGCTTTGTTTCATGTATGCATTTCCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACATTTTGGGAATTCTTAAGCTTTGTTTCATGTATGCATTTCCAAA  900

seq1  ATGAATAAGTATCTGTCTCCACACAGAGAGGGGTGGGACCACTATATAGC  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATGAATAAGTATCTGTCT-CACACAGAGAGGGGTGGGACCACTATATAGC  949

seq1  TAGCCACAAAAGGACCTGATGATCTTATTTTCAAAAGGAGAAAGGCTTAC  1000
      |||||||||||||||||||||||||||||||| |||| ||||| ||||||
seq2  TAGCCACAAAAGGACCTGATGATCTTATTTTC-AAAGAAGAAA-GCTTAC  997

seq1  ATTTGGAAGTCTTCCTTGTGAATTTC-TTTCT--CTTTCTG-AGAATCTA  1046
      |||| |||||| |||||||||||||| |||||   |||||| ||||||||
seq2  ATTTTGAAGTC-TCCTTGTGAATTTCTTTTCTTCTTTTCTGAAGAATCTA  1046

seq1  AC-AAAAAGAACAAAATTTCTCAG-ATGTA--GTAAGAACTGAAATAACA  1092
      || ||||||||  ||| ||||||| |||||   || || ||||||| || 
seq2  ACAAAAAAGAAACAAAATTCTCAGAATGTAAGTTAGGACCTGAAAT-ACT  1095

seq1  AAACAAAACAAAAACTCCACTTCAG  1117
      ||||  ||| |||||||||||||||
seq2  AAAC-GAACGAAAACTCCACTTCAG  1119

seq1: chr8_5227008_5228183
seq2: B6Ng01-241E14.g_67_1236 (reverse)

seq1  GACTCT-ACTTTCTTTGTTCTTGCACACGC-CCGACTTGCCAGCAAGAAT  48
      |||||| ||| || ||||||| |||||||| | ||| ||||||||   ||
seq2  GACTCTAACTCTC-TTGTTCTGGCACACGCTCTGAC-TGCCAGCA--GAT  46

seq1  GAAGCTGCAACAGGATCCTTCTG-CACACGTTTATTGGGAGAGCTTGATT  97
      | |||||||||| ||| |||||| ||||||||  |||||||||| ||| |
seq2  G-AGCTGCAACAAGAT-CTTCTGCCACACGTTATTTGGGAGAGC-TGA-T  92

seq1  GCAGAGGTGAAGAGACCCCAAGCCCAGATCTGGTGCTGCTTATATAGGCC  147
      ||||||||||||||||||| ||||||||||| ||||||| ||||||||||
seq2  GCAGAGGTGAAGAGACCCCCAGCCCAGATCT-GTGCTGC-TATATAGGCC  140

seq1  TAGGAGAGGCGTGTC-TCACACCCGGATTGGTTATGCTTACCACCTCATT  196
      ||||||||||||||| ||||  ||||||||||||||||||||||||||||
seq2  TAGGAGAGGCGTGTCTTCACCACCGGATTGGTTATGCTTACCACCTCATT  190

seq1  TGCATGCCTACATCTGATTGGTTAACTTGTCTCTCATCTGATT-GGTTAA  245
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGCATGCCTACATCTGATTGGTTAACTTGTCTCTCATCTGATTGGGTTAA  240

seq1  CTTGTCTTCATCTGATTGGTTAACTTGTCTCTCATCTGATTGGTT-AATT  294
      | |||||||||||||||||||||| |||||||||||||||||||| ||||
seq2  C-TGTCTTCATCTGATTGGTTAAC-TGTCTCTCATCTGATTGGTTAAATT  288

seq1  CTCAAAACCTCATCTTGGCAAAAAAGTTTACTGCCTATGTATGCGTGGTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAACCTCATCTTGGCAAAAAAGTTTACTGCCTATGTATGCGTGGTG  338

seq1  GCCAACAGTAGCCAGCGCCACCCTGCAAAGGCACATGTGGCTTCCCACAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACAGTAGCCAGCGCCACCCTGCAAAGGCACATGTGGCTTCCCACAC  388

seq1  TTTGTTCCTCAAAAGGACTTAGAAAGAAATGATGTTCTGTATATCAGGAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCCTCAAAAGGACTTAGAAAGAAATGATGTTCTGTATATCAGGAA  438

seq1  AATTCAGATGAAAAACACAAAGAAATTCACAAAAGACCATAATATTCATG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGATGAAAAACACAAAGAAATTCACAAAAGACCATAATATTCATG  488

seq1  GTTAGGTTCACTAGAAGTCTTGGGAAATTTCAATTGCACATTAAATAGAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGTTCACTAGAAGTCTTGGGAAATTTCAATTGCACATTAAATAGAA  538

seq1  ACAGGCTTTAGATAATCTTTTATTAAAATATTTAATAACTCATGCTCAGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTTTAGATAATCTTTTATTAAAATATTTAATAACTCATGCTCAGG  588

seq1  AAAAGAACGTAACCGGGCATGCTTTTATGACTACTGGTTTTATTTGATAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACGTAACCGGGCATGCTTTTATGACTACTGGTTTTATTTGATAT  638

seq1  TTATGTTTTTCTCCATGGCAATCACTTTTTAGCACGGATGAATTTTAAAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTTTTCTCCATGGCAATCACTTTTTAGCACGGATGAATTTTAAAT  688

seq1  AACATAAACAACACAAAATAAATTAGAGAGAAATATGTAAGACTATTGCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAACAACACAAAATAAATTAGAGAGAAATATGTAAGACTATTGCT  738

seq1  TTGTTAATTTATCAACTGTATTCCTAACAAAATATATTCAGAAATGTGCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAATTTATCAACTGTATTCCTAACAAAATATATTCAGAAATGTGCA  788

seq1  TTTGTTGCAAAGTAATTGTGATAATTATTTTTCAAAAATACAGATATTTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGCAAAGTAATTGTGATAATTATTTTTCAAAAATACAGATATTTA  838

seq1  TTCACATTCTAAAAGTCTGAATTCATTATTGTCAAACATTTCAATAATTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATTCTAAAAGTCTGAATTCATTATTGTCAAACATTTCAATAATTT  888

seq1  TGAATGTCTAAAAGCTTTTTTTTCTTTCAAATATTTGTCATTCTACATGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTCTAAAAGCTTTTTTTTCTTTCAAATATTTGTCATTCTACATGT  938

seq1  GGCATTTCTGAAGACAGTTTCATTTTAACAAGTCAACAATTGTGTAGTTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTCTGAAGACAGTTTCATTTTAACAAGTCAACAATTGTGTAGTTT  988

seq1  TCCTTGGTAGTGGAATATAAAATTCTAATTGTGTTATTTTCTTTTTTACA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGTAGTGGAATATAAAATTCTAATTGTGTTATTTTCTTTTTTACA  1038

seq1  GCTGTCAATACTATCTCTGTTGCATGCATAAAAATTCCATGATCAATAAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCAATACTATCTCTGTTGCATGCATAAAAATTCCATGATCAATAAT  1088

seq1  AAGAGTTATTCTCATTAATGTCAATGAATCTCTCAAGGTTGTCCTAAGGT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTATTCTCATTAATGTCAATGAATCTCTCAAGGTTGTCCTAAGGT  1138

seq1  ATGGAAGTTTAATGAGTACCTAATGAGAATTC  1176
      ||||||||||||||||||||||||||||||||
seq2  ATGGAAGTTTAATGAGTACCTAATGAGAATTC  1170