BAC Information

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BAC

Clone NameB6Ng01-242F20
Chromosome8 (Build37)
Map Location 51,779,764 - 51,912,009
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039919, EG667495, LOC100039954, LOC100039966
Downstream geneLOC667517
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242F20.bB6Ng01-242F20.g
ACCGA052030GA052031
length1,1721,129
definitionB6Ng01-242F20.b B6Ng01-242F20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,779,764 - 51,780,931)(51,910,859 - 51,912,009)
sequence
gaattcacagatcagaacaaactcagtggcctggacaaaaggaaatattg
gacatattttataggttcattatggtcgagtgaaaataaatacatagaca
tccatattaattaatcaatatattaaagagaaaatattttaaatatgatg
taaacagagtaaacaaattgtaaagggtagagcaaaatatgttgttaatg
ataatctgtaaatgatctgccacaactgaattttaaaataatttatcagg
aaatcatcattcgttatttaatgctcatctattgagctaacgtctaaaaa
caatgaagaagtattagttgtgtaaggtttcaaaggtgagaaatgagcta
acatgtatgaagggaaatagcaaaaaatggatgtcttagaaagtagttaa
aattcaaaccagggaaaggactggaaaacaaataatcagatttttctcag
aattatgggaatttttcttaggaacactgaagataatgttaaagtctctt
tacatttcagagaaaatgtgggttgaaagtagaatcatagtccctgtcaa
gatggaatttgaaaagagtttgggcagatgtggttttttcaggagaaaca
gaaatatctgccaccaaaaggcaggtttaaaatgtacatagtagactgct
ttgttcaagaaaatctaaggatcaaaatgttaagatactttggtaatttt
tgattcttcttatccccacatttgggagtctagaataataacagtgaaag
ggaagtagtatatatctaaagagaccagagaaaacacttagttatatagt
ttaaaaatgtccagttaactaagtgactttatgacaagtggagaataaaa
acaacaagcatcaatgcattgtataaaaagttacataatttcaaattaaa
gaagatagtatatattttaagttacaaatgtaaacattattaccaacaac
atcataagaataaagaaataacaaggaaatagaaagaataaggtaaaagg
cataatactcaaatgaaaaacatataattaaaacattaatgaaagtttat
gtaaacagactcagaagtagctcaacttatattagtgttgaataaattat
ggtaagtatgtaagaagaaatgaaaatgtaataaattagaaaatggaaag
gggcatgaagtacctgttctct

gaattcactcctctcttctggccctcaaaaattttactctttacatagag
acagagcattttaaagtatcttttttatatttatttatgagaatgtcaga
catatataaaatgaattattccccaaatctgatattcaactcctttcata
tttcttcaataagttcctcttacaacttcctgtcatatttactttctata
acctcctaagaccagttagggctggcactggcagatcatgggaaacttac
aaataaatggtcatgtcctcaaaatgagtgacccccaagaaagataccaa
ctaccaacagcccttctgtaagtggtgcacctcagagctcatttgtcggt
cttgaatggactttggctggttaggatattttgatggtgtagtgcagcta
agccccaggtgttatgtgtttatgagtatcataatcatcacgctgtgggg
taaaaaaaaatatcattatccagaatgcttgtctatgatctcaggtcctt
accttctttctaccaccccatctgtgatgagtcctgagtctctgggagag
agagatggatataaatgcttcatttaggactggttactgagtctcagtac
tttactagtcagtcctgggccattctccagtgactggggtctattgccaa
caggagacctctgaccgaggtggagagctgcaaactccccagttcagtta
caatcccctaaaatatcatttttagttaaaaatattatgaaattttttag
tcacaaacactgctgtagttattcttagtatctttaaagtatggttttca
aaaactacacatgtataaaaacagtactcttgaatattacttatatacac
catacatcttcatgtatgcatcacctttaatattaatatattataattgt
cctgcaagtgctattgtttcatacctattgatctataggtctcctgtact
tagtcagcacatgtatttacaaaattgactcataaatatagatctagata
tatgtagatgcacatagttatctaaagataacatctttaaatgtatttat
ggcataaggatgtatttatgatattataatacaattattacattaatctg
agtgaaaaatactgcattagccttagagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_51779764_51780931
seq2: B6Ng01-242F20.b_48_1219

seq1  GAATTCACAGATCAGAACAAACTCAGTGGCCTGGACAAAAGGAAATATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGATCAGAACAAACTCAGTGGCCTGGACAAAAGGAAATATTG  50

seq1  GACATATTTTATAGGTTCATTATGGTCGAGTGAAAATAAATACATAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATTTTATAGGTTCATTATGGTCGAGTGAAAATAAATACATAGACA  100

seq1  TCCATATTAATTAATCAATATATTAAAGAGAAAATATTTTAAATATGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATTAATTAATCAATATATTAAAGAGAAAATATTTTAAATATGATG  150

seq1  TAAACAGAGTAAACAAATTGTAAAGGGTAGAGCAAAATATGTTGTTAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGAGTAAACAAATTGTAAAGGGTAGAGCAAAATATGTTGTTAATG  200

seq1  ATAATCTGTAAATGATCTGCCACAACTGAATTTTAAAATAATTTATCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTGTAAATGATCTGCCACAACTGAATTTTAAAATAATTTATCAGG  250

seq1  AAATCATCATTCGTTATTTAATGCTCATCTATTGAGCTAACGTCTAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATCATTCGTTATTTAATGCTCATCTATTGAGCTAACGTCTAAAAA  300

seq1  CAATGAAGAAGTATTAGTTGTGTAAGGTTTCAAAGGTGAGAAATGAGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAGAAGTATTAGTTGTGTAAGGTTTCAAAGGTGAGAAATGAGCTA  350

seq1  ACATGTATGAAGGGAAATAGCAAAAAATGGATGTCTTAGAAAGTAGTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTATGAAGGGAAATAGCAAAAAATGGATGTCTTAGAAAGTAGTTAA  400

seq1  AATTCAAACCAGGGAAAGGACTGGAAAACAAATAATCAGATTTTTCTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAACCAGGGAAAGGACTGGAAAACAAATAATCAGATTTTTCTCAG  450

seq1  AATTATGGGAATTTTTCTTAGGAACACTGAAGATAATGTTAAAGTCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGGGAATTTTTCTTAGGAACACTGAAGATAATGTTAAAGTCTCTT  500

seq1  TACATTTCAGAGAAAATGTGGGTTGAAAGTAGAATCATAGTCCCTGTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCAGAGAAAATGTGGGTTGAAAGTAGAATCATAGTCCCTGTCAA  550

seq1  GATGGAATTTGAAAAGAGTTTGGGCAGATGTGGTTTTTTCAGGAGAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAATTTGAAAAGAGTTTGGGCAGATGTGGTTTTTTCAGGAGAAACA  600

seq1  GAAATATCTGCCACCAAAAGGCAGGTTTAAAATGTACATAGTAGACTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATCTGCCACCAAAAGGCAGGTTTAAAATGTACATAGTAGACTGCT  650

seq1  TTGTTCAAGAAAATCTAAGGATCAAAATGTTAAGATACTTTGGTAATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAAGAAAATCTAAGGATCAAAATGTTAAGATACTTTGGTAATTTT  700

seq1  TGATTCTTCTTATCCCCACATTTGGGAGTCTAGAATAATAACAGTGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTTCTTATCCCCACATTTGGGAGTCTAGAATAATAACAGTGAAAG  750

seq1  GGAAGTAGTATATATCTAAAGAGACCAGAGAAAACACTTAGTTATATAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTAGTATATATCTAAAGAGACCAGAGAAAACACTTAGTTATATAGT  800

seq1  TTAAAAATGTCCAGTTAACTAAGTGACTTTATGACAAGTGGAGAATAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATGTCCAGTTAACTAAGTGACTTTATGACAAGTGGAGAATAAAA  850

seq1  ACAACAAGCATCAATGCATTGTATAAAAAGTTACATAATTTCAAATTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAGCATCAATGCATTGTATAAAAAGTTACATAATTTCAAATTAAA  900

seq1  GAAGATAGTATATA-TTTAAGTTACAAATGTAAACATTATTACCAACAAC  949
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAAGATAGTATATATTTTAAGTTACAAATGTAAACATTATTACCAACAAC  950

seq1  ATCATAAGAATAAAGAAATAACAA-GAAATAGAAAGAATAAGGTAAAAGG  998
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATCATAAGAATAAAGAAATAACAAGGAAATAGAAAGAATAAGGTAAAAGG  1000

seq1  CAT-ATACTCAAATGAAAAACATATAATTAAAACATTAATGAAAGTTTAT  1047
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATACTCAAATGAAAAACATATAATTAAAACATTAATGAAAGTTTAT  1050

seq1  GTAAACAGACTCAGAAGTAGCTCAACTTATATTAGTGTTG-ATAAATTAT  1096
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTAAACAGACTCAGAAGTAGCTCAACTTATATTAGTGTTGAATAAATTAT  1100

seq1  -GTAAGTTATGTAAG-AGAAATGAAAAATGTAATAAA-TAGAAAAATGAA  1143
       ||||| |||||||| ||||||| ||||||||||||| |||||||  |||
seq2  GGTAAG-TATGTAAGAAGAAATG-AAAATGTAATAAATTAGAAAATGGAA  1148

seq1  AGGGGAAATGAGGTACATGTTCTCT  1168
      |||||  |||| |||| ||||||||
seq2  AGGGG-CATGAAGTACCTGTTCTCT  1172


seq1: chr8_51910859_51912009
seq2: B6Ng01-242F20.g_64_1192 (reverse)

seq1  ACTCTA--GCTAATGCAGTATTTTTTCAAATCAGATTTAAATGTAATATA  48
      ||||||  |||||||||||||||||   | |||||||  ||||||||| |
seq2  ACTCTAAGGCTAATGCAGTATTTTT--CACTCAGATT--AATGTAATA-A  45

seq1  TTTGGTATTATAATTATTCCATTAAATACATCTTTATGGCATTAAAATTA  98
      ||  ||||||||| |||  || |||||||||| ||||| |||   || ||
seq2  TT--GTATTATAA-TAT--CA-TAAATACATCCTTATGCCAT---AAATA  86

seq1  CATTTTAAAGATGTTTATTCTTTTAGATAAATTAATGTGCATCCTACATA  148
      || |||||||||| ||||   ||||||||| |  |||||||| |||||||
seq2  CA-TTTAAAGATG-TTAT--CTTTAGATAACT--ATGTGCAT-CTACATA  129

seq1  TATCTAGATTCTATATTTATGAGTCAATTTTGTAAATTACATGTTGCTGA  198
      |||||||| ||||||||||||||||||||||||||| |||||| ||||||
seq2  TATCTAGA-TCTATATTTATGAGTCAATTTTGTAAA-TACATG-TGCTGA  176

seq1  CTAAGTACAGGAGACCTATAGATCAATAGGTATGAAACAATAGCACTTGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTACAGGAGACCTATAGATCAATAGGTATGAAACAATAGCACTTGC  226

seq1  AGGACAATTATAATATATTAATATTAAAGGTGATGCATACATGAAGATGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAATTATAATATATTAATATTAAAGGTGATGCATACATGAAGATGT  276

seq1  ATGGTGTATATAAGTAATATTCAAGAGTACTGTTTTTATACATGTGTAGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTATATAAGTAATATTCAAGAGTACTGTTTTTATACATGTGTAGT  326

seq1  TTTTGAAAACCATACCTTAAAGATACTAAGAATAACTACAGCAGTGTTTG  398
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAACCATACTTTAAAGATACTAAGAATAACTACAGCAGTGTTTG  376

seq1  TGACTAAAAAATTTCATAATATTTTTAACTAAAAATGATATTTTAGGGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAAAAAATTTCATAATATTTTTAACTAAAAATGATATTTTAGGGGA  426

seq1  TTGTAACTGAACTGGGGAGTTTGCAGCTCTCCACCTCGGTCAGAGGTCTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACTGAACTGGGGAGTTTGCAGCTCTCCACCTCGGTCAGAGGTCTC  476

seq1  CTGTTGGCAATAGACCCCAGTCACTGGAGAATGGCCCAGGACTGACTAGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGCAATAGACCCCAGTCACTGGAGAATGGCCCAGGACTGACTAGT  526

seq1  AAAGTACTGAGACTCAGTAACCAGTCCTAAATGAAGCATTTATATCCATC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACTGAGACTCAGTAACCAGTCCTAAATGAAGCATTTATATCCATC  576

seq1  TCTCTCTCCCAGAGACTCAGGACTCATCACAGATGGGGTGGTAGAAAGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCCCAGAGACTCAGGACTCATCACAGATGGGGTGGTAGAAAGAA  626

seq1  GGTAAGGACCTGAGATCATAGACAAGCATTCTGGATAATGATATTTTTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGGACCTGAGATCATAGACAAGCATTCTGGATAATGATATTTTTTT  676

seq1  TTACCCCACAGCGTGATGATTATGATACTCATAAACACATAACACCTGGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCCACAGCGTGATGATTATGATACTCATAAACACATAACACCTGGG  726

seq1  GCTTAGCTGCACTACACCATCAAAATATCCTAACCAGCCAAAGTCCATTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGCTGCACTACACCATCAAAATATCCTAACCAGCCAAAGTCCATTC  776

seq1  AAGACCGACAAATGAGCTCTGAGGTGCACCACTTACAGAAGGGCTGTTGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCGACAAATGAGCTCTGAGGTGCACCACTTACAGAAGGGCTGTTGG  826

seq1  TAGTTGGTATCTTTCTTGGGGGTCACTCATTTTGAGGACATGACCATTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGGTATCTTTCTTGGGGGTCACTCATTTTGAGGACATGACCATTTA  876

seq1  TTTGTAAGTTTCCCATGATCTGCCAGTGCCAGCCCTAACTGGTCTTAGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGTTTCCCATGATCTGCCAGTGCCAGCCCTAACTGGTCTTAGGA  926

seq1  GGTTATAGAAAGTAAATATGACAGGAAGTTGTAAGAGGAACTTATTGAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATAGAAAGTAAATATGACAGGAAGTTGTAAGAGGAACTTATTGAAG  976

seq1  AAATATGAAAGGAGTTGAATATCAGATTTGGGGAATAATTCATTTTATAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGAAAGGAGTTGAATATCAGATTTGGGGAATAATTCATTTTATAT  1026

seq1  ATGTCTGACATTCTCATAAATAAATATAAAAAAGATACTTTAAAATGCTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGACATTCTCATAAATAAATATAAAAAAGATACTTTAAAATGCTC  1076

seq1  TGTCTCTATGTAAAGAGTAAAATTTTTGAGGGCCAGAAGAGAGGAGTGAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTATGTAAAGAGTAAAATTTTTGAGGGCCAGAAGAGAGGAGTGAA  1126

seq1  TTC  1151
      |||
seq2  TTC  1129


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