BAC Information

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BAC

Clone NameB6Ng01-242H10
Chromosome8 (Build37)
Map Location 19,573,831 - 19,604,786
singlet/doubletdoublet
Overlap geneLOC100040561
Upstream geneMcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326
Downstream geneLOC624198, EG665730, 4930467E23Rik, LOC100041567, LOC547150, LOC100040599, EG665822, 6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242H10.bB6Ng01-242H10.g
ACCGA052098GA052099
length1,1511,120
definitionB6Ng01-242H10.b B6Ng01-242H10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,603,739 - 19,604,786)(19,573,831 - 19,574,955)
sequence
gaattccttgatttatcttttgccgtcaggatatctaatttgtttcttct
ttgtacatgactgctcaacaagccatgaccaacaacaactaagaacagcc
aacagcaacgaatcaacagccaacctagagggctctagcatttacataac
cctctaaaaagcccccagaattctaagcatcacacagtcacagaaactac
ctgcagttggcaaaatcaggcccttgctagagcatgaggtaaatcatagt
cagctgctgtggacaatctgaagcagccccatatcccacacctgagataa
agaagaaaacatattcttttaatatttctgtgtatttttttaaaaaagaa
cccaaatttctcactacaggaaaaaacaaaaacagaaaaaccaaagcata
acattcaccccccacttggtcaaaggcttgccagccccagagacctgata
ccaggtgcagaaattctgagatgggcaatgttaccgaaaaatcatcctgc
aacttccagaaacttctctggcatgagaaattttatctcttctcctggga
ttgtaagatgtcactgactatttcagacctggctcaatccaatttgcaag
aggaaataagtgtgagattctgtcctaagagaactagagaactgagtgac
agagaaggttgtcctttggtctccacatgcatgagcatgcgtgtgtgtgc
acatgtgtgtgcacacacacacacaccaggaaatgttatgagattcaagg
agaggatgtgtaaaacaattagctttgtgcttcgcatcatggtagtggct
atttgtatcgcccctcctctccttccagtgctctgagacatgtaatcacc
taagaagcagcttctggcttttaaagtcataaatccaacttctgcctaca
gccctatttcttcacagcccccttaatcatgtggcatctttgatttgact
ttatcatgatgtccattcctttgagctgttctaacacatcagttcccaga
ttaatccttcccttcattcacatcgtcatccattacttaatcggtctcta
gatttgctctacagcctctctcacactgcctagccagccccaaacactgg
cactgatctgctcactagccttaccatggtagaacgatgatgccagctat
t
gaattcagtggtgagctaaaaattcaagtatccacaaaggtgatctcttc
caagtgttccagggcagaatttactccttatctctgtcagcttctaatgg
ttgctggcattgtttgtggtcgcccattccaggttctgcctctgttttca
tgcggctttctctcatctgtcatcccatatcatcgtgcctcactctcata
aagaaacttgttgttatatcatctttgaaccactgagatgatcaaagata
cctttatttcaagatccttaatttggtctgattttcaacatccttttgcc
aataacacagtattcatattctttattaatacttgagtattttgggggtc
attattaagttggccatagaagagagcgggatctggggcatggatgttgc
ctggaattttggcttacaaactggatggatagtgctgagatgaaattgta
gtcactgataaacttagcttgatcatggacccatctgtctgacaacttgt
aaatataagtctagagtctagaggaaagcttggatctagagcttttggga
attgacacagcaggatgtaaatagtatgatccacaggaaagattgcccat
tcagaatataaaggaaggtctagaaatgtttgtaatcaaaccttgatgga
cttagaggtgaatggtgaaataaagagaattgtcaaagaatattggaggc
aagcaagcatagggaataccttattaacttggactccacttgtcttggac
tatctccatacactcttgtaatgatgctcttatcaacatgaggccatcac
ctgaaaatactatatgtgtccacccctctcctaactaacatagcaatcaa
aaatctccacctgcctagagctatgtgtgggtaccactaaaaataatgaa
atacatttttgttcttcaaataaaacatcaataactgccttttgtttcat
tgagagtctttttattccaaattttatttttagatatatgtagggtaccc
aaaataaagggataaatctagcttagagtagtggtggtatatgctaagta
gatcattgcctcctctactttaaagggtaaatcttgtttgaccatactat
gcataggtaaatagatgcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_19603739_19604786
seq2: B6Ng01-242H10.b_168_1199 (reverse)

seq1  AATAGCT-GCATCATCGTTTTCTTTACCATGGGGTAGAGGCTAGTGAGGC  49
      ||||||| ||||||||||    | ||||||  |||| |||||||||| ||
seq2  AATAGCTGGCATCATCGT----TCTACCAT--GGTA-AGGCTAGTGA-GC  42

seq1  AGGAACAGTGGCAGGTGGTTTGGGGCTGCCTAAGCAGTGTGAAGGAGAGG  99
      | || ||||| |||   ||||||||||| ||| |||||||||  ||||||
seq2  A-GATCAGTGCCAG--TGTTTGGGGCTGGCTAGGCAGTGTGA--GAGAGG  87

seq1  CTGTAGAGCAAAATCCTAGAGACCGATTAAAGTAATGGATGACGATTGTG  149
      ||||||||||||   ||||||||||||| |||||||||||||||| ||| 
seq2  CTGTAGAGCAAA--TCTAGAGACCGATT-AAGTAATGGATGACGA-TGT-  132

seq1  GAATGAAGGG-AGGATTAATCTGGGAACTGATGTGTTAGAACAGCTCAAA  198
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAGGGAAGGATTAATCTGGGAACTGATGTGTTAGAACAGCTCAAA  182

seq1  GGAATGGACATCATGATAAAGTCAAATCAAAGATGCCACATGATTAAGGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGACATCATGATAAAGTCAAATCAAAGATGCCACATGATTAAGGG  232

seq1  GGCTGTGAAGAAATAGGGCTGTAGGCAGAAGTTGGATTTATGACTTTAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGAAGAAATAGGGCTGTAGGCAGAAGTTGGATTTATGACTTTAAA  282

seq1  AGCCAGAAGCTGCTTCTTAGGTGATTACATGTCTCAGAGCACTGGAAGGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAAGCTGCTTCTTAGGTGATTACATGTCTCAGAGCACTGGAAGGA  332

seq1  GAGGAGGGGCGATACAAATAGCCACTACCATGATGCGAAGCACAAAGCTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGGGCGATACAAATAGCCACTACCATGATGCGAAGCACAAAGCTA  382

seq1  ATTGTTTTACACATCCTCTCCTTGAATCTCATAACATTTCCTGGTGTGTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTACACATCCTCTCCTTGAATCTCATAACATTTCCTGGTGTGTG  432

seq1  TGTGTGTGCACACACATGTGCACACACACGCATGCTCATGCATGTGGAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGCACACACATGTGCACACACACGCATGCTCATGCATGTGGAGA  482

seq1  CCAAAGGACAACCTTCTCTGTCACTCAGTTCTCTAGTTCTCTTAGGACAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGACAACCTTCTCTGTCACTCAGTTCTCTAGTTCTCTTAGGACAG  532

seq1  AATCTCACACTTATTTCCTCTTGCAAATTGGATTGAGCCAGGTCTGAAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCACACTTATTTCCTCTTGCAAATTGGATTGAGCCAGGTCTGAAAT  582

seq1  AGTCAGTGACATCTTACAATCCCAGGAGAAGAGATAAAATTTCTCATGCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTGACATCTTACAATCCCAGGAGAAGAGATAAAATTTCTCATGCC  632

seq1  AGAGAAGTTTCTGGAAGTTGCAGGATGATTTTTCGGTAACATTGCCCATC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGTTTCTGGAAGTTGCAGGATGATTTTTCGGTAACATTGCCCATC  682

seq1  TCAGAATTTCTGCACCTGGTATCAGGTCTCTGGGGCTGGCAAGCCTTTGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATTTCTGCACCTGGTATCAGGTCTCTGGGGCTGGCAAGCCTTTGA  732

seq1  CCAAGTGGGGGGTGAATGTTATGCTTTGGTTTTTCTGTTTTTGTTTTTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGGGGGGTGAATGTTATGCTTTGGTTTTTCTGTTTTTGTTTTTTC  782

seq1  CTGTAGTGAGAAATTTGGGTTCTTTTTTAAAAAAATACACAGAAATATTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTGAGAAATTTGGGTTCTTTTTTAAAAAAATACACAGAAATATTA  832

seq1  AAAGAATATGTTTTCTTCTTTATCTCAGGTGTGGGATATGGGGCTGCTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATATGTTTTCTTCTTTATCTCAGGTGTGGGATATGGGGCTGCTTC  882

seq1  AGATTGTCCACAGCAGCTGACTATGATTTACCTCATGCTCTAGCAAGGGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTCCACAGCAGCTGACTATGATTTACCTCATGCTCTAGCAAGGGC  932

seq1  CTGATTTTGCCAACTGCAGGTAGTTTCTGTGACTGTGTGATGCTTAGAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTTGCCAACTGCAGGTAGTTTCTGTGACTGTGTGATGCTTAGAAT  982

seq1  TCTGGGGGCTTTTTAGAGGGTTATGTAAATGCTAGAGCCCTCTAGGTTGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGGCTTTTTAGAGGGTTATGTAAATGCTAGAGCCCTCTAGGTTGG  1032

seq1: chr8_19573831_19574955
seq2: B6Ng01-242H10.g_66_1185

seq1  GAATTCAGTGGTGAGCTAAAAATTCAAGTATCCACAAAGGTGATCTCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGTGAGCTAAAAATTCAAGTATCCACAAAGGTGATCTCTTC  50

seq1  CAAGTGTTCCAGGGCAGAATTTACTCCTTATCTCTGTCAGCTTCTAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTTCCAGGGCAGAATTTACTCCTTATCTCTGTCAGCTTCTAATGG  100

seq1  TTGCTGGCATTGTTTGTGGTCGCCCATTCCAGGTTCTGCCTCTGTTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGCATTGTTTGTGGTCGCCCATTCCAGGTTCTGCCTCTGTTTTCA  150

seq1  TGCGGCTTTCTCTCATCTGTCATCCCATATCATCGTGCCTCACTCTCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGCTTTCTCTCATCTGTCATCCCATATCATCGTGCCTCACTCTCATA  200

seq1  AAGAAACTTGTTGTTATATCATCTTTGAACCACTGAGATGATCAAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACTTGTTGTTATATCATCTTTGAACCACTGAGATGATCAAAGATA  250

seq1  CCTTTATTTCAAGATCCTTAATTTGGTCTGATTTTCAACATCCTTTTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATTTCAAGATCCTTAATTTGGTCTGATTTTCAACATCCTTTTGCC  300

seq1  AATAACACAGTATTCATATTCTTTATTAATACTTGAGTATTTTGGGGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACACAGTATTCATATTCTTTATTAATACTTGAGTATTTTGGGGGTC  350

seq1  ATTATTAAGTTGGCCATAGAAGAGAGCGGGATCTGGGGCATGGATGTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAAGTTGGCCATAGAAGAGAGCGGGATCTGGGGCATGGATGTTGC  400

seq1  CTGGAATTTTGGCTTACAAACTGGATGGATAGTGCTGAGATGAAATTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATTTTGGCTTACAAACTGGATGGATAGTGCTGAGATGAAATTGTA  450

seq1  GTCACTGATAAACTTAGCTTGATCATGGACCCATCTGTCTGACAACTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGATAAACTTAGCTTGATCATGGACCCATCTGTCTGACAACTTGT  500

seq1  AAATATAAGTCTAGAGTCTAGAGGAAAGCTTGGATCTAGAGCTTTTGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAGTCTAGAGTCTAGAGGAAAGCTTGGATCTAGAGCTTTTGGGA  550

seq1  ATTGACACAGCAGGATGTAAATAGTATGATCCACAGGAAAGATTGCCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACACAGCAGGATGTAAATAGTATGATCCACAGGAAAGATTGCCCAT  600

seq1  TCAGAATATAAAGGAAGGTCTAGAAATGTTTGTAATCAAACCTTGATGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATATAAAGGAAGGTCTAGAAATGTTTGTAATCAAACCTTGATGGA  650

seq1  CTTAGAGGTGAATGGTGAAATAAAGAGAATTGTCAAAGAATATTGGAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGGTGAATGGTGAAATAAAGAGAATTGTCAAAGAATATTGGAGGC  700

seq1  AAGCAAGCATAGGGAATACCTTATTAACTTGGACTCCACTTGTCTTGGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGCATAGGGAATACCTTATTAACTTGGACTCCACTTGTCTTGGAC  750

seq1  TATCTCCATACACTCTTGTAATGATGCTCTTATCAACATGAGGCCATCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCATACACTCTTGTAATGATGCTCTTATCAACATGAGGCCATCAC  800

seq1  CTGAAAATACTATATGTGTCCACCCCTCTCCTAACTAACATAGCAATCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAATACTATATGTGTCCACCCCTCTCCTAACTAACATAGCAATCAA  850

seq1  AAATCTCCACCTGCCTAGAGCTATGTGTGGGTACCACTAAAAATAATGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCCACCTGCCTAGAGCTATGTGTGGGTACCACTAAAAATAATGAA  900

seq1  ATACATTTTTGTTCTTCAAAT-AAACATCAATAACTGCCTTTTGTTTCAT  949
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATACATTTTTGTTCTTCAAATAAAACATCAATAACTGCCTTTTGTTTCAT  950

seq1  TGAGAGTC-TTTTATTC--AAATTTATTTTAGAATATATGTA-GGTA-CC  994
      |||||||| ||||||||  || ||||||||   ||||||||| |||| ||
seq2  TGAGAGTCTTTTTATTCCAAATTTTATTTTTAGATATATGTAGGGTACCC  1000

seq1  AAAATAAAGGGATAAATCTAGCTTAGAGTAGTTGGTGGTATATGCTTAGT  1044
      ||||||||||||||||||||||||||||||| |||||||||||||| |||
seq2  AAAATAAAGGGATAAATCTAGCTTAGAGTAG-TGGTGGTATATGCTAAGT  1049

seq1  AAGATCAATTGCCTCCTCTTACTTTAAAGGGTAAAAATCCTTGTTTGACA  1094
       ||||| ||||||||||| ||||||||||||||||    |||||||||| 
seq2  -AGATC-ATTGCCTCCTC-TACTTTAAAGGGTAAA---TCTTGTTTGAC-  1092

seq1  CATACCTATGCATAGTTAAAATAAGATGCAT  1125
      |||| |||||||||| ||||   ||||||||
seq2  CATA-CTATGCATAGGTAAA--TAGATGCAT  1120