BAC Information

Click to search

BAC

Clone NameB6Ng01-243A12
Chromosome8 (Build37)
Map Location 67,553,880 - 67,660,322
singlet/doubletdoublet
Overlap geneLOC665388, LOC665396
Upstream geneTll1, LOC100040989, Cpe, Sc4mol, Klhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60
Downstream geneLOC100040949, LOC665405, Vaultrc-ps1, LOC100040967, March1, LOC100040986
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243A12.bB6Ng01-243A12.g
ACCGA052523GA052524
length1,1581,140
definitionB6Ng01-243A12.b B6Ng01-243A12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,659,168 - 67,660,322)(67,553,880 - 67,554,998)
sequence
gaattcacagagatccatcacactgtgggtgctgggattaaaggcataca
ccaccacacccagtgtatgttctattttcttcatttaatcatttttggac
atgatctcaagtagcccaggtcaaagactctaccatatgaagggtgactt
tgaactcacgatcctcatgtcttctcctccctagtgctggtgtgcaccac
tcagtctgttttatgcaatgctgggaattggagccaggtctttgtgcatg
tcgggcaagcattcgacctactgtgctgcaatcccagctcctgtaatggt
accttcatcccatggttttcaacagctttcacagtaacttgacacttaac
caagtctgtaaaagacacaaagccatgagtgagatggttacagggaccca
aaatgctggaaaaactaataaaaaatgaattggaagaaagaagaacccta
catttattttcaagtgaagttattgttcctggaaaagggaagagaggcct
gggttacttgcaacaggattttaaaggattgggaatgttaattttcttag
ttacttttcctattgctatgattaaaaaaaaaaaaaataccctgaccaaa
agcaactcaccctggctctcaggtgcactccattatggctaagtagccct
ggaggcaggagctggggaagcctctcagccaggaagcagagtcatgagct
ggtgttcagccagcttccccatctttatgcagactaagacccaagtccac
agaatgctgctgcctactttcagggtggatctccctcctcaattagccta
atctagatgatcctctcagttaaccccaagatttgtctccaaggtgattt
cagatcctaggacattggcaatattaaccattataataagtcactgtgta
agtgaattaaacatttaaatgtattttgggaagtaaattatataatatat
attggtaaaatgatattttatgtttcctgattaaagagaatagtcaccct
ctagagtggagaggaagcatcaaggctcgctactggcacactccagcagt
ccccacatgagaagacagcactgatgtttttcttgtgtgctgagcatagg
tcctgtagattcccagagtctcaggatgctgtacttttctcagtagacac
tgagcatc
gaattctctgactgcagtaacattccacacatttgcgtccagttctaacc
cagttcgcctggttttaatagttgactaattaaaaaagtaactaagacca
taggagctggacacaaggctatatacccatggttctggcagcagcatgaa
cccacaacccgaagctgaggcaggagtgccgctcacaccaggaattcaag
gtcagctgggcaacagagaaaaaaggtatagagaaaggtgcagcggtgcc
tactgtaaaccctggtactcgaagactgaagcacccgaaagatagagacc
agagagtcagaagttcaaggctatacagtgaatatgtgtcctgtgagtct
gagaccagctggtagatatagcaataccctctgcctccccacacacaggc
acgcacgtgtatacacacacagacacacactcacacatacacacacgctc
acatacatacacaggcacacatacacacagacacacactcacatacacag
acacacactcagacacacacatacacacacaggcacacagacacacacac
acatatatatatacacacacagaaacacataggcacacagacacacacac
aaaggtacacacagacacactcacacacacagacacacaaagacacatgc
tcacagacacacacacatacacacagacagacatacacacagatacacat
agacacacagacacacagacagacacacaggcacacagacacacacaggt
acacacacagacacatacacactcacacacacagtcacacatacacacag
acacatgctcacgcacacagacacacacacacagacacacactcacacac
acagacacacacacacacacatacatacacactctcactcctcaaaagca
aaatgaaaagtaataaaacccaaaagtagctcaagcccgtactcctgcag
cactggtgaagttaagaacagactgggtctacaacaagatcagtggaact
agcaagggggagggttaacctgcctaataaagaattttcattatttggcc
ttagtggcagaaatattttttgtaccacatatgtcaataatgcaaaatat
aaaaaacatctacacgttatataaaaaacatgaagttgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_67659168_67660322
seq2: B6Ng01-243A12.b_43_1200 (reverse)

seq1  GATGCTCAGTGTCTACTGAG-AAAGTACAGCATCCCGAAGACTCTGGGGG  49
      |||||||||||||||||||| |||||||||||||| | ||||||| ||| 
seq2  GATGCTCAGTGTCTACTGAGAAAAGTACAGCATCCTG-AGACTCT-GGGA  48

seq1  ATCTACAGGGCCTATGCTCAGCACACAAG-AAAACATCAGTGCTGTC-TC  97
      ||||||||| ||||||||||||||||||| ||||||||||||||||| ||
seq2  ATCTACAGGACCTATGCTCAGCACACAAGAAAAACATCAGTGCTGTCTTC  98

seq1  TCATGTGGGGACTGCTGGAGTGTGCCAGTAGCGAGCCTTGATGCTTCCTC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGGGGACTGCTGGAGTGTGCCAGTAGCGAGCCTTGATGCTTCCTC  148

seq1  TCCACTCTAGAGGGTGACTA-TCTCCTTAATCAGGAAACATAAAATATCA  196
      |||||||||||||||||||| |||| ||||||||||||||||||||||||
seq2  TCCACTCTAGAGGGTGACTATTCTCTTTAATCAGGAAACATAAAATATCA  198

seq1  TTTTACCAATATATATTATATAATTTACTT-CCAAAATACATTTAAATGT  245
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTTACCAATATATATTATATAATTTACTTCCCAAAATACATTTAAATGT  248

seq1  TTAATTCACTTACACAGTGACTTATTATAATGGTTAATATTGCCAATGTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCACTTACACAGTGACTTATTATAATGGTTAATATTGCCAATGTC  298

seq1  CTAGGATCTGAAATCACCTTGGAGACAAATCTTGGGGTTAACTGAGAGGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATCTGAAATCACCTTGGAGACAAATCTTGGGGTTAACTGAGAGGA  348

seq1  TCATCTAGATTAGGCTAATTGAGGAGGGAGATCCACCCTGAAAGTAGGCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTAGATTAGGCTAATTGAGGAGGGAGATCCACCCTGAAAGTAGGCA  398

seq1  GCAGCATTCTGTGGACTTGGGTCTTAGTCTGCATAAAGATGGGGAAGCTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATTCTGTGGACTTGGGTCTTAGTCTGCATAAAGATGGGGAAGCTG  448

seq1  GCTGAACACCAGCTCATGACTCTGCTTCCTGGCTGAGAGGCTTCCCCAGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACACCAGCTCATGACTCTGCTTCCTGGCTGAGAGGCTTCCCCAGC  498

seq1  TCCTGCCTCCAGGGCTACTTAGCCATAATGGAGTGCACCTGAGAGCCAGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTCCAGGGCTACTTAGCCATAATGGAGTGCACCTGAGAGCCAGG  548

seq1  GTGAGTTGCTTTTGGTCAGGGTATTTTTTTTTTTTTTAATCATAGCAATA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTGCTTTTGGTCAGGGTATTTTTTTTTTTTTTAATCATAGCAATA  598

seq1  GGAAAAGTAACTAAGAAAATTAACATTCCCAATCCTTTAAAATCCTGTTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGTAACTAAGAAAATTAACATTCCCAATCCTTTAAAATCCTGTTG  648

seq1  CAAGTAACCCAGGCCTCTCTTCCCTTTTCCAGGAACAATAACTTCACTTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAACCCAGGCCTCTCTTCCCTTTTCCAGGAACAATAACTTCACTTG  698

seq1  AAAATAAATGTAGGGTTCTTCTTTCTTCCAATTCATTTTTTATTAGTTTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATGTAGGGTTCTTCTTTCTTCCAATTCATTTTTTATTAGTTTT  748

seq1  TCCAGCATTTTGGGTCCCTGTAACCATCTCACTCATGGCTTTGTGTCTTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCATTTTGGGTCCCTGTAACCATCTCACTCATGGCTTTGTGTCTTT  798

seq1  TACAGACTTGGTTAAGTGTCAAGTTACTGTGAAAGCTGTTGAAAACCATG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACTTGGTTAAGTGTCAAGTTACTGTGAAAGCTGTTGAAAACCATG  848

seq1  GGATGAAGGTACCATTACAGGAGCTGGGATTGCAGCACAGTAGGTCGAAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAGGTACCATTACAGGAGCTGGGATTGCAGCACAGTAGGTCGAAT  898

seq1  GCTTGCCCGACATGCACAAAGACCTGGCTCCAATTCCCAGCATTGCATAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCCGACATGCACAAAGACCTGGCTCCAATTCCCAGCATTGCATAA  948

seq1  AACAGACTGAGTGGTGCACACCAGCACTAGGGAGGAGAAGACATGAGGAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACTGAGTGGTGCACACCAGCACTAGGGAGGAGAAGACATGAGGAT  998

seq1  CGTGAGTTCAAAGTCACCCTTCATATGGTAGAGTCTTTGACCTGGGCTAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGTTCAAAGTCACCCTTCATATGGTAGAGTCTTTGACCTGGGCTAC  1048

seq1  TTGAGATCATGTCCAAAAATGATTAAATGAAGAAAATAGAACATACACTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATCATGTCCAAAAATGATTAAATGAAGAAAATAGAACATACACTG  1098

seq1  GGTGTGGTGGTGTATGCCTTTAATCCCAGCACCCACAGTGTGATGGATCT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGTGGTGTATGCCTTTAATCCCAGCACCCACAGTGTGATGGATCT  1148

seq1  CTGTGAATTC  1155
      ||||||||||
seq2  CTGTGAATTC  1158

seq1: chr8_67553880_67554998
seq2: B6Ng01-243A12.g_68_1207

seq1  GAATTCTCTGACTGCAGTAACATTCCACACATTTGCGTCCAGTTCTAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGACTGCAGTAACATTCCACACATTTGCGTCCAGTTCTAACC  50

seq1  CAGTTCGCCTGGTTTTAATAGTTGACTAATTAAAAAAGTAACTAAGACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCGCCTGGTTTTAATAGTTGACTAATTAAAAAAGTAACTAAGACCA  100

seq1  TAGGAGCTGGACACAAGGCTATATACCCATGGTTCTGGCAGCAGCATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCTGGACACAAGGCTATATACCCATGGTTCTGGCAGCAGCATGAA  150

seq1  CCCACAACCCGAAGCTGAGGCAGGAGTGCCGCTCACACCAGGAATTCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAACCCGAAGCTGAGGCAGGAGTGCCGCTCACACCAGGAATTCAAG  200

seq1  GTCAGCTGGGCAACAGAGAAAAAAGGTATAGAGAAAGGTGCAGCGGTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTGGGCAACAGAGAAAAAAGGTATAGAGAAAGGTGCAGCGGTGCC  250

seq1  TACTGTAAACCCTGGTACTCGAAGACTGAAGCACCCGAAAGATAGAGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAAACCCTGGTACTCGAAGACTGAAGCACCCGAAAGATAGAGACC  300

seq1  AGAGAGTCAGAAGTTCAAGGCTATACAGTGAATATGTGTCCTGTGAGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTCAGAAGTTCAAGGCTATACAGTGAATATGTGTCCTGTGAGTCT  350

seq1  GAGACCAGCTGGTAGATATAGCAATACCCTCTGCCTCCCCACACACAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCAGCTGGTAGATATAGCAATACCCTCTGCCTCCCCACACACAGGC  400

seq1  ACGCACGTGTATACACACACAGACACACACTCACACATACACACACGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCACGTGTATACACACACAGACACACACTCACACATACACACACGCTC  450

seq1  ACATACATACACAGGCACACATACACACAGACACACACTCACATACACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATACACAGGCACACATACACACAGACACACACTCACATACACAG  500

seq1  ACACACACTCAGACACACACATACACACACAGGCACACAGACACACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACTCAGACACACACATACACACACAGGCACACAGACACACACAC  550

seq1  ACATATATATATACACACACAGAAACACATAGGCACACAGACACACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATATATACACACACAGAAACACATAGGCACACAGACACACACAC  600

seq1  AAAGGTACACACAGACACACTCACACACACAGACACACAAAGACACATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTACACACAGACACACTCACACACACAGACACACAAAGACACATGC  650

seq1  TCACAGACACACACACATACACACAGACAGACATACACACAGATACACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGACACACACACATACACACAGACAGACATACACACAGATACACAT  700

seq1  AGACACACAGACACACAGACAGACACACAGGCACACAGACACACACAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACAGACACACAGACAGACACACAGGCACACAGACACACACAGGT  750

seq1  ACACACACAGACACATACACACTCACACACACAGTCACACATACACACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAGACACATACACACTCACACACACAGTCACACATACACACAG  800

seq1  ACACATGCTCACGCACACAGACACACACACACAGACACACACTCACACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCTCACGCACACAGACACACACACACAGACACACACTCACACAC  850

seq1  ACAGACACACACACACACACATACATACACACTCTCACTCCTC-AAAGCA  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACAGACACACACACACACACATACATACACACTCTCACTCCTCAAAAGCA  900

seq1  AAATGAAAAGTAATAAA--CCCAAAGTAGCTCAAGCCCGTACTCCTGCAG  947
      |||||||||||||||||  || ||||||||||||||||||||||||||||
seq2  AAATGAAAAGTAATAAAACCCAAAAGTAGCTCAAGCCCGTACTCCTGCAG  950

seq1  CACT-GTGAGTTTAAG-ACAGACTGGGTCTAC-ACAAGATCAGTGG-ACT  993
      |||| ||||  ||||| ||||||||||||||| ||||||||||||| |||
seq2  CACTGGTGAAGTTAAGAACAGACTGGGTCTACAACAAGATCAGTGGAACT  1000

seq1  AGCA--GGGGAGGG-TAACCTGCCTTATAAAGAATTTTCATTATTT-GCC  1039
      ||||  |||||||| |||||||||| |||||||||||||||||||| |||
seq2  AGCAAGGGGGAGGGTTAACCTGCCTAATAAAGAATTTTCATTATTTGGCC  1050

seq1  TTAGTGGCAG--ATATTTTTTGTA-CACATATGTCA--TATGCAA---AT  1081
      ||||||||||  |||||||||||| |||||||||||   ||||||   ||
seq2  TTAGTGGCAGAAATATTTTTTGTACCACATATGTCAATAATGCAAAATAT  1100

seq1  ATAAAACATCTACATGTT-TATTATAAACATGAA-TTGCA  1119
      | |||||||||||| ||| ||| | ||||||||| |||||
seq2  AAAAAACATCTACACGTTATATAAAAAACATGAAGTTGCA  1140