BAC Information

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BAC

Clone NameB6Ng01-243B09
Chromosome8 (Build37)
Map Location 86,996,593 - 87,143,393
singlet/doubletdoublet
Overlap geneCacna1a
Upstream geneLOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130
Downstream geneIer2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243B09.bB6Ng01-243B09.g
ACCGA052565GA052566
length3491,174
definitionB6Ng01-243B09.b B6Ng01-243B09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,143,046 - 87,143,393)(86,996,593 - 86,997,748)
sequence
ctgtctggaaaacaaacaaacaaatgatactaagaagacacaaaacaaaa
agatgctaaaagatactaaaacacaaattcaaatgagaagaaactggttg
gaaacaaatggtcacttggtatctttgctggttttgtttagtatttgcta
attcaaagggcatttttttaagggtttctctatttctctgtgtagccctg
gctgtcttggaactcactctgtagaccagctggccttaaactcacagaga
tctgcctgcctctgcttcccaagtgctggaactaaaggtgtgcaccatca
ctgcgctgctcctatccctaaaagtctttttttttttactgaaataaac
gaattcctagtgagggctgtgctgtggctcagtggtaggatttttttttt
tttggtctatcaagtataagactttaggtttcatctcaagaaggtgaaag
aaaataaaaacaaaatctgagctaggtgtgattattacacttataatctc
ggcacttgggaggcttaggtatgaagatcatgggtgttcacacacaaaca
tttatagtaacactggagcacgcagatatgacacctgctgaaatgagact
ggatgtcaaagtcacacgtgtgcccctgtcgtgcctgtctccccactgca
taaggatcaaaacaggggagagaagctaagatgttctttgagcctcacag
attggcagtgggcatgacctggggtttaaatgggcagctttggcagccac
attctttctccttgtgctcaataagtagaggaaaagttgctgtttggcat
ctgaccggacataggagtgaagacctgtatcccagacatcagttgcctgc
cctggcctgcaacagcagccatcaggcgcagaactatccaggacagctca
gctgaatacggacagctggctctgtgcagggacttttgggcttgatgtgg
cccccccagcttgacagttctcctaagcttagggtcatctggggactgtg
gacagagtccaagcaaatagaaatcaggttgggccagcccccacccaagg
ccctcagtgcagacttggtttgtgttttctgggagtctgtctctagcaag
agactggttttcctcttttcccctcttctcctcctcttctctctttcttt
tttggtgcagatctcatatagcccaggctggccttgaactagttacaaag
tcaaaggtgaccatgaatccccaattctgggaacgccaggcatgtggcaa
tatgctcaaattacttgccctgcttgatagactgacagaagtcactcttt
cacagctttagctaaacaggacaattctcctgcctcagtctccttgtttg
ctgagggtcagcgtgtgtggctaccaatgccctagtttgacatcgcatat
attcacagattcagtgatcaagcttacacagaggttgacggaggctgagc
cctgaaacttaaggttgttcatctacacgccatttgttcttggtggacaa
gggagaacatttcttcatctcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_87143046_87143393
seq2: B6Ng01-243B09.b_51_399 (reverse)

seq1  GTTTATTTCAGT-GCTGACAAAAGACTTTTAGGGATAGGAGCAGCGCAGT  49
      ||||||||||||     | |||||||||||||||||||||||||||||||
seq2  GTTTATTTCAGTAAAAAAAAAAAGACTTTTAGGGATAGGAGCAGCGCAGT  50

seq1  GATGGTGCACACCTTTAGTTCCAGCACTTGGGAAGCAGAGGCAGGCAGAT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGCACACCTTTAGTTCCAGCACTTGGGAAGCAGAGGCAGGCAGAT  100

seq1  CTCTGTGAGTTTAAGGCCAGCTGGTCTACAGAGTGAGTTCCAAGACAGCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGAGTTTAAGGCCAGCTGGTCTACAGAGTGAGTTCCAAGACAGCC  150

seq1  AGGGCTACACAGAGAAATAGAGAAACCCTTAAAAAAATGCCCTTTGAATT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTACACAGAGAAATAGAGAAACCCTTAAAAAAATGCCCTTTGAATT  200

seq1  AGCAAATACTAAACAAAACCAGCAAAGATACCAAGTGACCATTTGTTTCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATACTAAACAAAACCAGCAAAGATACCAAGTGACCATTTGTTTCC  250

seq1  AACCAGTTTCTTCTCATTTGAATTTGTGTTTTAGTATCTTTTAGCATCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTTTCTTCTCATTTGAATTTGTGTTTTAGTATCTTTTAGCATCTT  300

seq1  TTTGTTTTGTGTCTTCTTAGTATCATTTGTTTGTTTGTTTTCCAGACAG  348
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTGTCTTCTTAGTATCATTTGTTTGTTTGTTTTCCAGACAG  349

seq1: chr8_86996593_86997748
seq2: B6Ng01-243B09.g_66_1239

seq1  GAATTCCTAGTGAGGGCTGTGCTGTGGCTCAGTGGTAGGATTTTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGTGAGGGCTGTGCTGTGGCTCAGTGGTAGGATTTTTTTTTT  50

seq1  TTTGGTCTATCAAGTATAAGACTTTAGGTTTCATCTCAAGAAGGTGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCTATCAAGTATAAGACTTTAGGTTTCATCTCAAGAAGGTGAAAG  100

seq1  AAAATAAAAACAAAATCTGAGCTAGGTGTGATTATTACACTTATAATCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAACAAAATCTGAGCTAGGTGTGATTATTACACTTATAATCTC  150

seq1  GGCACTTGGGAGGCTTAGGTATGAAGATCATGGGTGTTCACACACAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTGGGAGGCTTAGGTATGAAGATCATGGGTGTTCACACACAAACA  200

seq1  TTTATAGTAACACTGGAGCACGCAGATATGACACCTGCTGAAATGAGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGTAACACTGGAGCACGCAGATATGACACCTGCTGAAATGAGACT  250

seq1  GGATGTCAAAGTCACACGTGTGCCCCTGTCGTGCCTGTCTCCCCACTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTCAAAGTCACACGTGTGCCCCTGTCGTGCCTGTCTCCCCACTGCA  300

seq1  TAAGGATCAAAACAGGGGAGAGAAGCTAAGATGTTCTTTGAGCCTCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATCAAAACAGGGGAGAGAAGCTAAGATGTTCTTTGAGCCTCACAG  350

seq1  ATTGGCAGTGGGCATGACCTGGGGTTTAAATGGGCAGCTTTGGCAGCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCAGTGGGCATGACCTGGGGTTTAAATGGGCAGCTTTGGCAGCCAC  400

seq1  ATTCTTTCTCCTTGTGCTCAATAAGTAGAGGAAAAGTTGCTGTTTGGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTCTCCTTGTGCTCAATAAGTAGAGGAAAAGTTGCTGTTTGGCAT  450

seq1  CTGACCGGACATAGGAGTGAAGACCTGTATCCCAGACATCAGTTGCCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCGGACATAGGAGTGAAGACCTGTATCCCAGACATCAGTTGCCTGC  500

seq1  CCTGGCCTGCAACAGCAGCCATCAGGCGCAGAACTATCCAGGACAGCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCTGCAACAGCAGCCATCAGGCGCAGAACTATCCAGGACAGCTCA  550

seq1  GCTGAATACGGACAGCTGGCTCTGTGCAGGGACTTTTGGGCTTGATGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATACGGACAGCTGGCTCTGTGCAGGGACTTTTGGGCTTGATGTGG  600

seq1  CCCCCCCAGCTTGACAGTTCTCCTAAGCTTAGGGTCATCTGGGGACTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCAGCTTGACAGTTCTCCTAAGCTTAGGGTCATCTGGGGACTGTG  650

seq1  GACAGAGTCCAAGCAAATAGAAATCAGGTTGGGCCAGCCCCCACCCAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGTCCAAGCAAATAGAAATCAGGTTGGGCCAGCCCCCACCCAAGG  700

seq1  CCCTCAGTGCAGACTTGGTTTGTGTTTTCTGGGAGTCTGTCTCTAGCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGTGCAGACTTGGTTTGTGTTTTCTGGGAGTCTGTCTCTAGCAAG  750

seq1  AGACTGGTTTTCCTCTTTTCCCCTCTTCTCCTCCTCTTCTCTCTTTCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGTTTTCCTCTTTTCCCCTCTTCTCCTCCTCTTCTCTCTTTCTTT  800

seq1  TTTGGTGCAGATCTCATATAGCCCAGGCTGGCCTTGAACTAGTTACAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGCAGATCTCATATAGCCCAGGCTGGCCTTGAACTAGTTACAAAG  850

seq1  TCAAAGGTGACCATGAATCCCCAATTCT-GGAACGCCAGGCATGTGGCAA  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCAAAGGTGACCATGAATCCCCAATTCTGGGAACGCCAGGCATGTGGCAA  900

seq1  TATGCTCAAATTACTTG-CCTGCTTGATAGACTGACAGAAGTCACTC-TT  947
      ||||||||||||||||| ||||||||||||||||||||||||||||| ||
seq2  TATGCTCAAATTACTTGCCCTGCTTGATAGACTGACAGAAGTCACTCTTT  950

seq1  CACAGCTTTAGCTAAACA-GAC-ATTCTCCTGCCTCAGTCTCC-TGTTTG  994
      |||||||||||||||||| ||| |||||||||||||||||||| ||||||
seq2  CACAGCTTTAGCTAAACAGGACAATTCTCCTGCCTCAGTCTCCTTGTTTG  1000

seq1  CTGA-GGTCAGCGTGTGT-GCTACC-ATG-CCTAGTTTGACCATCGCATA  1040
      |||| ||||||||||||| |||||| ||| |||||||||| |||||||||
seq2  CTGAGGGTCAGCGTGTGTGGCTACCAATGCCCTAGTTTGA-CATCGCATA  1049

seq1  TATTCACAGATTCAGTGATCCAAGCTTACACAGAGGTTGAC-GAAGCTGA  1089
      ||||||||||||||||||| ||||||||||||||||||||| || |||||
seq2  TATTCACAGATTCAGTGAT-CAAGCTTACACAGAGGTTGACGGAGGCTGA  1098

seq1  G-CCTG-AACT--AAGTTG-TCATCTAACACGCCATT--TTTTTGTGTGA  1132
      | |||| ||||  | |||| |||||| ||||||||||  || |||   ||
seq2  GCCCTGAAACTTAAGGTTGTTCATCT-ACACGCCATTTGTTCTTGGTGGA  1147

seq1  CAAGGGAG-ACATTTC-TCATC-CCTT  1156
      |||||||| ||||||| ||||| ||||
seq2  CAAGGGAGAACATTTCTTCATCTCCTT  1174