BAC Information

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BAC

Clone NameB6Ng01-243B18
Chromosome8 (Build37)
Map Location 17,736,406 - 17,860,770
singlet/doubletdoublet
Overlap genenone
Upstream geneCsmd1
Downstream geneLOC665638, LOC100040466, Mcph1, Angpt2, Agpat5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243B18.bB6Ng01-243B18.g
ACCGA052583GA052584
length1,0361,119
definitionB6Ng01-243B18.b B6Ng01-243B18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,736,406 - 17,737,434)(17,859,644 - 17,860,770)
sequence
gaattcaccttcaggaaggactcagatccacagtagttggacttatggcc
actgacaatgagaagaggcttagcacagtgagtatttcaaattgtaaagt
cataaggtgaaatgatatgaaataactgataatttttatgtgcaagcaaa
tgcattctcggagaacagaaaaaactaaagttgtatctgtcagcacaagt
gatctagaacagattgttggaatttaaagaaattattcactgataaacaa
tatttgtgtttttcataagcacatgatataatgactctaaaatgtgtcac
atgtggcataaagaatagcatttaaaaccatatatcatacgaagaaatag
tgatgtttaatccatactcagttaccccaagatggtccagagattacaat
gggcaatgtcggatttagcatcttaccaatactgcagtcataaaatcatg
ggaaaatatacttataatgaatacaagaatatttttttcaggtatgaata
gaagtttaagaaaataaaaaaaaaatgaatctagaattagaagatgatat
agggttaagagtactgactgttattccagagaacctaggattttgttcct
agcacccacatggcagaatatggccatctgtaacttcagttcctgggaat
tcagttagctattctggcctttgtaggcaatgaaagtgtgaggtaaacgt
acatacatgcagatgacatgcccagacaaactttcaaaatattaatattt
taaagttaaaatctaaataacatttgagttcttccgtgactgggttacct
cactcaggataatgccctccaggtccaaccatttgcctaggaatttcata
aattcattctttttaatagctgagtagtactccattgtgtaaatgtacca
catttttttgtatccattcctctgttgagggacatctgggttctttccag
cttctggcgattataaataaagctgctatgaacatagtggagcatgtttc
ttttttactagttgggaacatcttctggatatatgc
gaattccatcacaagttcaggttgaccagttacctattgtgtcttctgaa
cttctgctaccctcaaagactttttccacaacacctgtagattctttatg
ctaatgaccttaagtctcaggtgccataagtggctctgtctggtctcttc
agaggggatttatagccaatgtatttggtgcattaagttcatctttatcc
tcatattttattgttactttatttcaacagaagactattaggttacaact
cagtttttctcagtttacttcatctttttttttttgataaatctgtgatt
tctttaattatgttgccatattgcgtctagaaacaaagtcatcgtcatat
tatatgggtatgcccattagtacttacatatccaatgtcacttttataaa
acatgtttatataaacaggtcataccttttgactaacataaacttgggta
aacagaatatatttacatgattgttcttaaaaaaaatccagaactcactg
aacccaaacttcttaaataaaagatctcacagaggtatagcttatacgtc
tattatagtcgcagggaaccacctgattgaaaatcaggaagcctgtgtgt
atattagcctctttctgtggtgctatacttgttctatatcatggtagttc
tttgcagagtagtgagcatctgtgatcccagcacgtggggtatagaagca
aggggctcaggaattctggtcagttttggatacatgatactctttctcaa
aaacaaacagacaaacagacagacaaacaaaacaagcaaacaaacaaacg
tcagagatataatagtatatatgccagtaacattataaggactgtgtagt
tacatacttatatatagtatgtttacatatttatataacactttttcttt
tttttttggtttttcaagacagggttttctctgtgtagccctggctgttt
ctagaaatcacttctgtagaccaggctggcctcgaactcagaaatctgcc
tgctctgcttcccaagtgctaggattaaagcatgtgcacactgccagctt
atataatacttttaagagaacttatgatttgagaaagagcaggggagtgt
atggaggcattgattgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_17736406_17737434
seq2: B6Ng01-243B18.b_44_1074

seq1  GAATTCACCTTCAGGAAGGACTCAGATCCACAGTAGTTGGACTTATGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTCAGGAAGGACTCAGATCCACAGTAGTTGGACTTATGGCC  50

seq1  ACTGACAATGAGAAGAGGCTTAGCACAGTGAGTATTTCAAATTGTAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACAATGAGAAGAGGCTTAGCACAGTGAGTATTTCAAATTGTAAAGT  100

seq1  CATAAGGTGAAATGATATGAAATAACTGATAATTTTTATGTGCAAGCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGTGAAATGATATGAAATAACTGATAATTTTTATGTGCAAGCAAA  150

seq1  TGCATTCTCGGAGAACAGAAAAAACTAAAGTTGTATCTGTCAGCACAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCTCGGAGAACAGAAAAAACTAAAGTTGTATCTGTCAGCACAAGT  200

seq1  GATCTAGAACAGATTGTTGGAATTTAAAGAAATTATTCACTGATAAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAGAACAGATTGTTGGAATTTAAAGAAATTATTCACTGATAAACAA  250

seq1  TATTTGTGTTTTTCATAAGCACATGATATAATGACTCTAAAATGTGTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTGTTTTTCATAAGCACATGATATAATGACTCTAAAATGTGTCAC  300

seq1  ATGTGGCATAAAGAATAGCATTTAAAACCATATATCATACGAAGAAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCATAAAGAATAGCATTTAAAACCATATATCATACGAAGAAATAG  350

seq1  TGATGTTTAATCCATACTCAGTTACCCCAAGATGGTCCAGAGATTACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTTAATCCATACTCAGTTACCCCAAGATGGTCCAGAGATTACAAT  400

seq1  GGGCAATGTCGGATTTAGCATCTTACCAATACTGCAGTCATAAAATCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAATGTCGGATTTAGCATCTTACCAATACTGCAGTCATAAAATCATG  450

seq1  GGAAAATATACTTATAATGAATACAAGAATATTTTTTTCAGGTATGAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATATACTTATAATGAATACAAGAATATTTTTTTCAGGTATGAATA  500

seq1  GAAGTTTAAGAAAATAAAAAAAAAATGAATCTAGAATTAGAAGATGATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTAAGAAAATAAAAAAAAAATGAATCTAGAATTAGAAGATGATAT  550

seq1  AGGGTTAAGAGTACTGACTGTTATTCCAGAGAACCTAGGATTTTGTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTAAGAGTACTGACTGTTATTCCAGAGAACCTAGGATTTTGTTCCT  600

seq1  AGCACCCACATGGCAGAATATGGCCATCTGTAACTTCAGTTCCTGGGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCACATGGCAGAATATGGCCATCTGTAACTTCAGTTCCTGGGAAT  650

seq1  TCAGTTAGCTATTCTGGCCTTTGTAGGCAATGAAAGTGTGAGGTAAACGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTAGCTATTCTGGCCTTTGTAGGCAATGAAAGTGTGAGGTAAACGT  700

seq1  ACATACATGCAGATGACATGCCCAGACAAACTTTCAAAATATTAATATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATGCAGATGACATGCCCAGACAAACTTTCAAAATATTAATATTT  750

seq1  TAAAGTTAAAATCTAAATAACATTTGAGTTCTTTTGTGATTGGGTTACCT  800
      |||||||||||||||||||||||||||||||||  |||| ||||||||||
seq2  TAAAGTTAAAATCTAAATAACATTTGAGTTCTTCCGTGACTGGGTTACCT  800

seq1  CACTCAGGATAATGCCCTCCAGGTCCAACCATTTGCCTAGGAATTTCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGGATAATGCCCTCCAGGTCCAACCATTTGCCTAGGAATTTCATA  850

seq1  AATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCA  900

seq1  CA-TTTTTTGTATCCATTCCTCTGTTGAGGGACATCTGGGTTCTTTCCAG  949
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTTGTATCCATTCCTCTGTTGAGGGACATCTGGGTTCTTTCCAG  950

seq1  CTTCTGGCGATTATAAATAAAGCTGCTATGAACATAGTGGAGCATGTTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCGATTATAAATAAAGCTGCTATGAACATAGTGGAGCATGTTTC  1000

seq1  TTTTTTACTAGTT-GGAACATCTTCTGGATA  1029
      ||||||||||||| |||||||||||||||||
seq2  TTTTTTACTAGTTGGGAACATCTTCTGGATA  1031

seq1: chr8_17859644_17860770
seq2: B6Ng01-243B18.g_66_1184 (reverse)

seq1  TCTCATTCAATGCCCTCCCATACACTCCCCCTTGCTCTATCTCAAATTCA  50
      ||||| ||||||||   |||||||||||||  |||||| ||||||| |||
seq2  TCTCAATCAATGCC--TCCATACACTCCCC--TGCTCTTTCTCAAA-TCA  45

seq1  TAGTTTCTCTTTAAAAAGTATTATATAAGCTGGGCAGTGGTGGCACATGC  100
      ||  |||||||  |||||||||||||||||| |||||||   ||||||| 
seq2  TAAGTTCTCTT--AAAAGTATTATATAAGCT-GGCAGTG--TGCACATG-  89

seq1  CTTTAATCCTAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGA  150
      ||||||||||||||||||||| ||||| ||||||||||||||||||||||
seq2  CTTTAATCCTAGCACTTGGGAAGCAGA-GCAGGCAGATTTCTGAGTTCGA  138

seq1  GGCCAGCCTGGTCTACAG-AGTGATTTCTAG-AACAGCCAGGGCTACACA  198
      |||||||||||||||||| |||||||||||| ||||||||||||||||||
seq2  GGCCAGCCTGGTCTACAGAAGTGATTTCTAGAAACAGCCAGGGCTACACA  188

seq1  GAG-AAACCCTGTCTTGAAAAACCAAAAAAAAAAG-AAAAGTGTTATATA  246
      ||| ||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAGAAAACCCTGTCTTGAAAAACCAAAAAAAAAAGAAAAAGTGTTATATA  238

seq1  AATATGTAAACATACTATATATAAGTATGTAACTACACAGTCCTTATAAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTAAACATACTATATATAAGTATGTAACTACACAGTCCTTATAAT  288

seq1  GTTACTGGCATATATACTATTATATCTCTGACGTTTGTTTGTTTGCTTGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTGGCATATATACTATTATATCTCTGACGTTTGTTTGTTTGCTTGT  338

seq1  TTTGTTTGTCTGTCTGTTTGTCTGTTTGTTTTTGAGAAAGAGTATCATGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTCTGTCTGTTTGTCTGTTTGTTTTTGAGAAAGAGTATCATGT  388

seq1  ATCCAAAACTGACCAGAATTCCTGAGCCCCTTGCTTCTATACCCCACGTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAAACTGACCAGAATTCCTGAGCCCCTTGCTTCTATACCCCACGTG  438

seq1  CTGGGATCACAGATGCTCACTACTCTGCAAAGAACTACCATGATATAGAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATCACAGATGCTCACTACTCTGCAAAGAACTACCATGATATAGAA  488

seq1  CAAGTATAGCACCACAGAAAGAGGCTAATATACACACAGGCTTCCTGATT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATAGCACCACAGAAAGAGGCTAATATACACACAGGCTTCCTGATT  538

seq1  TTCAATCAGGTGGTTCCCTGCGACTATAATAGACGTATAAGCTATACCTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCAGGTGGTTCCCTGCGACTATAATAGACGTATAAGCTATACCTC  588

seq1  TGTGAGATCTTTTATTTAAGAAGTTTGGGTTCAGTGAGTTCTGGATTTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGATCTTTTATTTAAGAAGTTTGGGTTCAGTGAGTTCTGGATTTTT  638

seq1  TTTAAGAACAATCATGTAAATATATTCTGTTTACCCAAGTTTATGTTAGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAACAATCATGTAAATATATTCTGTTTACCCAAGTTTATGTTAGT  688

seq1  CAAAAGGTATGACCTGTTTATATAAACATGTTTTATAAAAGTGACATTGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGTATGACCTGTTTATATAAACATGTTTTATAAAAGTGACATTGG  738

seq1  ATATGTAAGTACTAATGGGCATACCCATATAATATGACGATGACTTTGTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAAGTACTAATGGGCATACCCATATAATATGACGATGACTTTGTT  788

seq1  TCTAGACGCAATATGGCAACATAATTAAAGAAATCACAGATTTATCAAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGACGCAATATGGCAACATAATTAAAGAAATCACAGATTTATCAAAA  838

seq1  AAAAAAAGATGAAGTAAACTGAGAAAAACTGAGTTGTAACCTAATAGTCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGATGAAGTAAACTGAGAAAAACTGAGTTGTAACCTAATAGTCT  888

seq1  TCTGTTGAAATAAAGTAACAATAAAATATGAGGATAAAGATGAACTTAAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGAAATAAAGTAACAATAAAATATGAGGATAAAGATGAACTTAAT  938

seq1  GCACCAAATACATTGGCTATAAATCCCCTCTGAAGAGACCAGACAGAGCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAAATACATTGGCTATAAATCCCCTCTGAAGAGACCAGACAGAGCC  988

seq1  ACTTATGGCACCTGAGACTTAAGGTCATTAGCATAAAGAATCTACAGGTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGGCACCTGAGACTTAAGGTCATTAGCATAAAGAATCTACAGGTG  1038

seq1  TTGTGGAAAAAGTCTTTGAGGGTAGCAGAAGTTCAGAAGACACAATAGGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGAAAAAGTCTTTGAGGGTAGCAGAAGTTCAGAAGACACAATAGGT  1088

seq1  AACTGGTCAACCTGAACTTGTGATGGAATTC  1127
      |||||||||||||||||||||||||||||||
seq2  AACTGGTCAACCTGAACTTGTGATGGAATTC  1119