BAC Information

Click to search

BAC

Clone NameB6Ng01-243I06
Chromosome8 (Build37)
Map Location 36,467,904 - 36,622,010
singlet/doubletdoublet
Overlap geneThex1
Upstream geneLOC666746, Dusp4, LOC675578, Tnks, LOC666792, LOC666797, LOC666804, Ppp1r3b
Downstream geneMfhas1, LOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1, EG544878, 6430573F11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243I06.bB6Ng01-243I06.g
ACCGA052878GA052879
length1,163821
definitionB6Ng01-243I06.b B6Ng01-243I06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,467,904 - 36,469,071)(36,621,203 - 36,622,010)
sequence
gaattcacaacaagggccacttggtgagagagcagtaaagaatcacagca
ctacctctgtgatatgtttttggttttttgttttttgccaaaaactatat
gactgagattgctatgacgcagcatagagaaaatcctgtggctgtgtgta
atgaggtcctcatgaggttgagggcacagtgctctgagaaaggcagagat
gggaaatccaggtcatgtgatcatgaattgcccccttagtagcaagtagc
ccacaggcagaatctgaagggcaacctaggaggaggaaagctcatgggcg
ttctttgtaccgttgcatcgttttatagatttgaactgttccaaagcaaa
ctgtcctctctgagtgttgactgactgataactgaagacgtttctggcct
gtgaagacggcacaagcaatagtcatgaatatgccggtgcttctcagaga
gccgcctgcaggtaggtaacagatcacaatggttaccgaagggtaccagt
tctaggagttcacatcatagtgcatttcaggctccatggcaaaaacactg
tcttccagcagtgggggtgcacactttagtcccagcactctgaaggcaga
ggcaggtgggtctctgaactcaaactcagcttggtctacagagcaagttc
gaggatagttggggctacacagagagaccctgtctggaaaaaccaaagcc
atcgtgacttggctgatagatttcacagagcctgaattcctgtacaaagg
aagtagattcttgattcacattctggcccaagtttgtcaactcatcgggc
agaggagtgctgatttaacaactgacaaggaaagatgaatgaacccgtca
taataaaggcttctaaacaggagccttctctccaggaaagggttgcagct
aaaaggtcatcaccatacactcactaaggcattttggatggacaaggtgg
acttgggtagccacatgatctggggtgggaccaaactcagtccagtgacc
tcatgggtcctatttagactagatagctcatcacttggctctctgctgtc
ttcagggaaaagagactcgtcactctcttcagatcatcactgatttgtca
gcatccagctctgcctgaactgttggcagatgcataacacgtcactatcc
aggaacatgttta
gaattcagtgctttcttttagagccctttaaaatcctgtcttaaaatggt
gatttgaatataaactgtttattctggagccattcccaataagacatagt
aggaaaatgagaaagagaaagaaaacagggaatccaaggaaagagggatt
gtcaagcaagctttccttacagccagctagagttgaatctctgaggaaat
ctcaggaggtaaggagtgagttggtccacttgaggatgggatgtgggaat
acttatcaattctttgattaatgctttcttcagaatgagtgcatgaaaaa
gccagcagtgagagactgcaagagcaactcacattgagacaagagagcaa
agaaagctgaacaatggtatcctgagccctggcctgcttacactgaagtc
tcaaaagaagctgctggaaggccagtttccatgaagtggcatgggcagtt
ttgtggggtcaatgccaaaatgcttcaaagaaagagaaggaggtcatggg
aagggaatgaaagggctggagcagagatagctgattagaactgggttaaa
ctgttgaaagttttctctatctataagagctgggctagtctggtgtgtgg
ggtgttggggggggcaatccttctgctcagctttccaagtgctgagacta
taagttgtgcatcatcatacttggtctggctaaagacaaaacacagacaa
gcagatgaaattaaacacacaccacacacacacacaccacacacacacac
actgtgcccttcgggtatccagtcatatctggaatatttttttccagctt
gtcagtctctttgttccatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_36467904_36469071
seq2: B6Ng01-243I06.b_44_1206

seq1  GAATTCACAACAAGGGCCACTTGGTGAGAGAGCAGTAAAGAATCACAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAACAAGGGCCACTTGGTGAGAGAGCAGTAAAGAATCACAGCA  50

seq1  CTACCTCTGTGATATGTTTTTGGTTTTTTGTTTTTTGCCAAAAACTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCTGTGATATGTTTTTGGTTTTTTGTTTTTTGCCAAAAACTATAT  100

seq1  GACTGAGATTGCTATGACGCAGCATAGAGAAAATCCTGTGGCTGTGTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGATTGCTATGACGCAGCATAGAGAAAATCCTGTGGCTGTGTGTA  150

seq1  ATGAGGTCCTCATGAGGTTGAGGGCACAGTGCTCTGAGAAAGGCAGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTCCTCATGAGGTTGAGGGCACAGTGCTCTGAGAAAGGCAGAGAT  200

seq1  GGGAAATCCAGGTCATGTGATCATGAATTGCCCCCTTAGTAGCAAGTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATCCAGGTCATGTGATCATGAATTGCCCCCTTAGTAGCAAGTAGC  250

seq1  CCACAGGCAGAATCTGAAGGGCAACCTAGGAGGAGGAAAGCTCATGGGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGCAGAATCTGAAGGGCAACCTAGGAGGAGGAAAGCTCATGGGCG  300

seq1  TTCTTTGTACCGTTGCATCGTTTTATAGATTTGAACTGTTCCAAAGCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTACCGTTGCATCGTTTTATAGATTTGAACTGTTCCAAAGCAAA  350

seq1  CTGTCCTCTCTGAGTGTTGACTGACTGATAACTGAAGACGTTTCTGGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTCTCTGAGTGTTGACTGACTGATAACTGAAGACGTTTCTGGCCT  400

seq1  GTGAAGACGGCACAAGCAATAGTCATGAATATGCCGGTGCTTCTCAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGACGGCACAAGCAATAGTCATGAATATGCCGGTGCTTCTCAGAGA  450

seq1  GCCGCCTGCAGGTAGGTAACAGATCACAATGGTTACCGAAGGGTACCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCCTGCAGGTAGGTAACAGATCACAATGGTTACCGAAGGGTACCAGT  500

seq1  TCTAGGAGTTCACATCATAGTGCATTTCAGGCTCCATGGCAAAAACACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGAGTTCACATCATAGTGCATTTCAGGCTCCATGGCAAAAACACTG  550

seq1  TCTTCCAGCAGTGGGGGTGCACACTTTAGTCCCAGCACTCTGAAGGCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAGCAGTGGGGGTGCACACTTTAGTCCCAGCACTCTGAAGGCAGA  600

seq1  GGCAGGTGGGTCTCTGAACTCAAACTCAGCTTGGTCTACAGAGCAAGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTGGGTCTCTGAACTCAAACTCAGCTTGGTCTACAGAGCAAGTTC  650

seq1  GAGGATAGTTGGGGCTACACAGAGAGACCCTGTCTGGAAAAACCAAAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATAGTTGGGGCTACACAGAGAGACCCTGTCTGGAAAAACCAAAGCC  700

seq1  ATCGTGACTTGGCTGATAGATTTCACAGAGCCTGAATTCCTGTACAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGACTTGGCTGATAGATTTCACAGAGCCTGAATTCCTGTACAAAGG  750

seq1  AAGTAGATTCTTGATTCACATTCTGGCCCAAGTTTGTCAACTCATCGGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGATTCTTGATTCACATTCTGGCCCAAGTTTGTCAACTCATCGGGC  800

seq1  AGAGGAGTGCTGATTTAACAACTGACAAGGAAAGATGAATGAACCCGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGTGCTGATTTAACAACTGACAAGGAAAGATGAATGAACCCGTCA  850

seq1  TAATAAAGGCTTCTAAACAGGAGCCTTCTCTCCAGG-AAGGGTTGCAGCT  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAATAAAGGCTTCTAAACAGGAGCCTTCTCTCCAGGAAAGGGTTGCAGCT  900

seq1  AAAAGGTCATCACCATACACTCACTAAGGCATTTTGGATGGACAAGGTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTCATCACCATACACTCACTAAGGCATTTTGGATGGACAAGGTGG  950

seq1  ACTT-GGTAGCCACATGATCTGGGGT-GGACCAAACTCAGTCCAGTGACC  997
      |||| ||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACTTGGGTAGCCACATGATCTGGGGTGGGACCAAACTCAGTCCAGTGACC  1000

seq1  TCAT-GGTCCTATTTTAGACTAGATAGCCTCCATCACTTGGCTCCTCTGC  1046
      |||| ||||||| |||||||||||||||   |||||||||||| ||||||
seq2  TCATGGGTCCTA-TTTAGACTAGATAGC--TCATCACTTGGCT-CTCTGC  1046

seq1  TGTCCTCAGGGGAAAAGAAGACTCGCCACTCTCCCTCAGATCATCACTGA  1096
      |||| ||| |||||||| ||||||| |||||| | |||||||||||||||
seq2  TGTCTTCA-GGGAAAAG-AGACTCGTCACTCT-CTTCAGATCATCACTGA  1093

seq1  TTTGTCAGCAAATCAGCTCTG-CTG-ACTGTTGGAAGAAAGAAAAAAAAA  1144
      ||||||||| |  |||||||| ||| |||||||| ||  |   | || | 
seq2  TTTGTCAGC-ATCCAGCTCTGCCTGAACTGTTGGCAG--ATGCATAACAC  1140

seq1  GTCACTATTCAAGAAACATGTTTA  1168
      ||||||| || || ||||||||||
seq2  GTCACTA-TCCAGGAACATGTTTA  1163

seq1: chr8_36621203_36622010
seq2: B6Ng01-243I06.g_64_884 (reverse)

seq1  ATAT-GAACAGAGAGACTGAC-AGCTGG-AAAAAATATT-CAGATATGAC  46
      |||| ||||| |||||||||| |||||| |||||||||| ||||||||||
seq2  ATATGGAACAAAGAGACTGACAAGCTGGAAAAAAATATTCCAGATATGAC  50

seq1  TGGATACCCGAA-GGCACAGTGTGTGTGTGTGT-GTGTGTGTGTGTGT-G  93
      |||||||||||| |||||||||||||||||||| |||||||||||||| |
seq2  TGGATACCCGAAGGGCACAGTGTGTGTGTGTGTGGTGTGTGTGTGTGTGG  100

seq1  TGTGTGTTTA--TTCATCTGCTTGTCTGTG-TTTGTC-TTAGCCAG-CCA  138
      ||||||||||  |||||||||||||||||| |||||| |||||||| |||
seq2  TGTGTGTTTAATTTCATCTGCTTGTCTGTGTTTTGTCTTTAGCCAGACCA  150

seq1  AGTATGATGATGCAC-ACTTATAGTCTCAGCACTTGGAAAGCTGAGCAGA  187
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGTATGATGATGCACAACTTATAGTCTCAGCACTTGGAAAGCTGAGCAGA  200

seq1  AGGATTGCCCCCCCCAACACCCCACACACCAGACTAGCCCAGCTCTTATA  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGCCCCCCCCAACACCCCACACACCAGACTAGCCCAGCTCTTATA  250

seq1  GATAGAGAAAACTTTCAACAGTTTAACCCAGTTCTAATCAGCTATCTCTG  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGAAAACTTTCAACAGTTTAACCCAGTTCTAATCAGCTATCTCTG  300

seq1  CTCCAGCCCTTTCATTCCCTTCCCATGACCTCCTTCTCTTTCTTTGAAGC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCCCTTTCATTCCCTTCCCATGACCTCCTTCTCTTTCTTTGAAGC  350

seq1  ATTTTGGCATTGACCCCACAAAACTGCCCATGCCACTTCATGGAAACTGG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGCATTGACCCCACAAAACTGCCCATGCCACTTCATGGAAACTGG  400

seq1  CCTTCCAGCAGCTTCTTTTGAGACTTCAGTGTAAGCAGGCCAGGGCTCAG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAGCAGCTTCTTTTGAGACTTCAGTGTAAGCAGGCCAGGGCTCAG  450

seq1  GATACCATTGTTCAGCTTTCTTTGCTCTCTTGTCTCAATGTGAGTTGCTC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCATTGTTCAGCTTTCTTTGCTCTCTTGTCTCAATGTGAGTTGCTC  500

seq1  TTGCAGTCTCTCACTGCTGGCTTTTTCATGCACTCATTCTGAAGAAAGCA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTCTCTCACTGCTGGCTTTTTCATGCACTCATTCTGAAGAAAGCA  550

seq1  TTAATCAAAGAATTGATAAGTATTCCCACATCCCATCCTCAAGTGGACCA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAAAGAATTGATAAGTATTCCCACATCCCATCCTCAAGTGGACCA  600

seq1  ACTCACTCCTTACCTCCTGAGATTTCCTCAGAGATTCAACTCTAGCTGGC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTCCTTACCTCCTGAGATTTCCTCAGAGATTCAACTCTAGCTGGC  650

seq1  TGTAAGGAAAGCTTGCTTGACAATCCCTCTTTCCTTGGATTCCCTGTTTT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGAAAGCTTGCTTGACAATCCCTCTTTCCTTGGATTCCCTGTTTT  700

seq1  CTTTCTCTTTCTCATTTTCCTACTATGTCTTATTGGGAATGGCTCCAGAA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTTTCTCATTTTCCTACTATGTCTTATTGGGAATGGCTCCAGAA  750

seq1  TAAACAGTTTATATTCAAATCACCATTTTAAGACAGGATTTTAAAGGGCT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGTTTATATTCAAATCACCATTTTAAGACAGGATTTTAAAGGGCT  800

seq1  CTAAAAGAAAGCACTGAATTC  808
      |||||||||||||||||||||
seq2  CTAAAAGAAAGCACTGAATTC  821