BAC Information

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BAC

Clone NameB6Ng01-243I09
Chromosome10 (Build37)8 (Build37)
Map Location 92,405,867 - 92,407,021117,797,636 - 117,798,473
singlet/doubletsingletsinglet
Overlap gene4930485B16Rik
Upstream geneLOC100041799, LOC667203, LOC216229, LOC100041814, Nedd1, Gm872
Downstream geneEG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243I09.bB6Ng01-243I09.g
ACCGA052884GA052885
length1,154989
definitionB6Ng01-243I09.b B6Ng01-243I09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(92,405,867 - 92,407,021)(117,797,636 - 117,798,473)
sequence
gaattcaaagcttcaatctgtagcaggcatttgacacgtagatgaatttt
tttcttagcatatttcaaagttttaaatttttttattcttatgaaatgca
aataacgttatatcttgccaattttccttatgaagcctcccactttttca
taaaaaatgaaataatctactctttttcaacagcctcttcaaagcccagg
tgccttgggaaacagacgaaaggagttaaaaaaaaatcctggagactggc
agctgatctcagaagggaagaaaaaggcagctgaggccatgtgtgggtct
ggagttaatcaggtgctctggcatgagacaggaaggggagcccgtgggag
agatgctccttggtctctgggcagtgagagtggttcaggaattggactgg
gcttcagatgggctgcacacagatgagagctattggagagtggacttaca
tacaggattccaaattgaatacctaaggacttccttcttcagtaagtcga
acaagtaaaacacccattaaaagtgttaagattttggtaatgtagacact
tcctagttaacagaacactaagaggttaaaggatgggggctcatccttaa
aaaccacatctcctagctgactggataaggctttccaacacaggagagtt
aacgtcacatttgcaaagagaatctgattaaatgataaactgaaagtaaa
gaagacagaaataaacagaggcaggagaaaggtacactgattcttctcca
gccctaagctaataaattactatgattgattgaatccttaaaacaaccac
aagaaatattggccattattacccttattttacaataaggaatggagggg
tctggcagatcagcatcatactctggaattcaaggaggtggtcctgagga
cagaaatattatgagccagtataacggacaaacagacagtgcgatggtgg
gagttaaagacacagtgaagtagactctgctatcccgttgaacaagaggt
ccaccgcagtgcatgaagctttcattgaagctgtagccttttattttctt
gcattgcagatcaggactgctttctccgacggactctacacatacgatgg
gtatcttagaaatgtagaatacagctgcagttcgtgttatgcatagccaa
agag
gaattcaaggcctgcctgatctatacaatgagttccaggacagccagggc
tatgcacagaaaccctgtcttgaaaaaaaagaagaaagagaaggagtggg
gaaagaggaagaggaagaggaagaagaggagaggggagagggaggacacc
ccctgtagaaatgaactcagttctaagaacagcagcatcctgtgtgtcac
cgaccaaagaacacagaagtttcaagattctgttggccacccggctcatc
tgtcagactgaatggactgcattttagggacatatccctaaacctacttt
taggtataatgtctgagttctgtattcctgggcaagactggtgcactttg
tcagtttcttgggactacagatgagatctttttaaaagaaaaagaaagaa
aacaggtaagaagcttagtacttccaacagcgctgagatgcaaggcactg
taagaaaacacacaaatccaaaaccgctttatcaggccccatggtgcgtg
agttttgccaggcttggctggaactgtggtcagccgccaggttttgaatc
aatgctggcactgaatgaatcagcagtgcaaaagtcccccttggagacat
tacaacttgcttttcaaacattttatgaagaggcttctaggtatgggcca
gaccaagtgaaagacttccccagctttccgtatattgttatggtaaagag
catgactaaaaccaacgagggagggaaaagagtattaagcatgctcttcc
agatcccacccatcaccgagggaagtccaggaaggaactcaaacaggaac
tgaaggataaactgcagaaaaatactgctataggctggccagttctctgt
cttcctcagattgtttttgtacacagcctgagaacgcctggcctagggat
ggcgccacccaatacgggctggggccctctgatatcaatccagacaagtc
tcctaatagatatagctcagaggctaatctgatctgggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_92405867_92407021
seq2: B6Ng01-243I09.b_43_1196

seq1  GAATTCAAAAGCTTCAATCTGTAGCAGGCATTTGACACGTAGATGAATTT  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTC-AAAGCTTCAATCTGTAGCAGGCATTTGACACGTAGATGAATTT  49

seq1  TTTTCTTAGCATATTTCAAAGTTTTAAATTTTTTTATTCTTATGAAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTAGCATATTTCAAAGTTTTAAATTTTTTTATTCTTATGAAATGC  99

seq1  AAATAACGTTATATCTTGCCAATTTTCCTTATGAAGCCTCCCACTTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACGTTATATCTTGCCAATTTTCCTTATGAAGCCTCCCACTTTTTC  149

seq1  ATAAAAAATGAAATAATCTACTCTTTTTCAACAGCCTCTTCAAAGCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAATGAAATAATCTACTCTTTTTCAACAGCCTCTTCAAAGCCCAG  199

seq1  GTGCCTTGGGAAACAGACGAAAGGAGTTAAAAAAAAATCCTGGAGACTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTTGGGAAACAGACGAAAGGAGTTAAAAAAAAATCCTGGAGACTGG  249

seq1  CAGCTGATCTCAGAAGGGAAGAAAAAGGCAGCTGAGGCCATGTGTGGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGATCTCAGAAGGGAAGAAAAAGGCAGCTGAGGCCATGTGTGGGTC  299

seq1  TGGAGTTAATCAGGTGCTCTGGCATGAGACAGGAAGGGGAGCCCGTGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTAATCAGGTGCTCTGGCATGAGACAGGAAGGGGAGCCCGTGGGA  349

seq1  GAGATGCTCCTTGGTCTCTGGGCAGTGAGAGTGGTTCAGGAATTGGACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCTCCTTGGTCTCTGGGCAGTGAGAGTGGTTCAGGAATTGGACTG  399

seq1  GGCTTCAGATGGGCTGCACACAGATGAGAGCTATTGGAGAGTGGACTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCAGATGGGCTGCACACAGATGAGAGCTATTGGAGAGTGGACTTAC  449

seq1  ATACAGGATTCCAAATTGAATACCTAAGGACTTCCTTCTTCAGTAAGTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGATTCCAAATTGAATACCTAAGGACTTCCTTCTTCAGTAAGTCG  499

seq1  AACAAGTAAAACACCCATTAAAAGTGTTAAGATTTTGGTAATGTAGACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTAAAACACCCATTAAAAGTGTTAAGATTTTGGTAATGTAGACAC  549

seq1  TTCCTAGTTAACAGAACACTAAGAGGTTAAAGGATGGGGGCTCATCCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGTTAACAGAACACTAAGAGGTTAAAGGATGGGGGCTCATCCTTA  599

seq1  AAAACCACATCTCCTAGCTGACTGGATAAGGCTTTCCAACACAGGAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCACATCTCCTAGCTGACTGGATAAGGCTTTCCAACACAGGAGAGT  649

seq1  TAACGTCACATTTGCAAAGAGAATCTGATTAAATGATAAACTGAAAGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGTCACATTTGCAAAGAGAATCTGATTAAATGATAAACTGAAAGTAA  699

seq1  AGAAGACAGAAATAAACAGAGGCAGGAGAAAGGTACACTGATTCTTCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACAGAAATAAACAGAGGCAGGAGAAAGGTACACTGATTCTTCTCC  749

seq1  AGCCCTAAGGCTAATAAATTACTATGATTGGTTGAATCCTTAAAACAACC  800
      |||||||| ||||||||||||||||||||| |||||||||||||||||||
seq2  AGCCCTAA-GCTAATAAATTACTATGATTGATTGAATCCTTAAAACAACC  798

seq1  ACAAGAAATATTGGCCATTATTACCCTTATTTTACAATAAGGAATGGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAATATTGGCCATTATTACCCTTATTTTACAATAAGGAATGGAGG  848

seq1  GGTCTGGCAGATCAGCATCATACTCTGGAATTCAAGGAGGTGGTCCTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGGCAGATCAGCATCATACTCTGGAATTCAAGGAGGTGGTCCTGAG  898

seq1  GACAGAAATATTATGAGCCAGTATAA-GGACAAACAGACAGTGCGATGGT  949
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GACAGAAATATTATGAGCCAGTATAACGGACAAACAGACAGTGCGATGGT  948

seq1  GGGGAGTTAAAGACACAGTG-AGTAGACTCTGCTATCCCGTTGAACAAAA  998
       ||||||||||||||||||| ||||||||||||||||||||||||||| |
seq2  -GGGAGTTAAAGACACAGTGAAGTAGACTCTGCTATCCCGTTGAACAAGA  997

seq1  GGGTCCACCCCAGTGC-TGAAGCCTTCATTAAAGGTGTCGCC-TTTATTT  1046
       |||||||| |||||| |||||| |||||| ||| ||| ||| |||||||
seq2  -GGTCCACCGCAGTGCATGAAGCTTTCATTGAAGCTGTAGCCTTTTATTT  1046

seq1  TC-TGCATTGCAGAATCAGGGACTTGCTTCTCAGACGGACTC-ACACATA  1094
      || |||||||||| |||| |||||   ||||| ||||||||| |||||||
seq2  TCTTGCATTGCAG-ATCA-GGACTGCTTTCTCCGACGGACTCTACACATA  1094

seq1  CGATGGGTATCTTAGAAATGTTAGATACCAGCTGCA-TTCGTGTAGGGCA  1143
      |||||||||||||||||||| ||||   |||||||| |||||||   |||
seq2  CGATGGGTATCTTAGAAATG-TAGAATACAGCTGCAGTTCGTGTTATGCA  1143

seq1  TAGCACAAAGAG  1155
      |||| |||||||
seq2  TAGC-CAAAGAG  1154

seq1: chr8_117797636_117798473
seq2: B6Ng01-243I09.g_213_1054 (reverse)

seq1  GCCCAGATCAGATTGTCCTCTG-GCTATATCTA-TAGGAGAC-TGTCTTG  47
      ||||||||||||||  |||||| |||||||||| |||||||| ||||| |
seq2  GCCCAGATCAGATTAGCCTCTGAGCTATATCTATTAGGAGACTTGTCTGG  50

seq1  ATTGATATCAGAGGG-CCCAGCCCGTATTGGGTGGCGCCATCCCTAGG-C  95
      ||||||||||||||| |||||||||||||||||||||||||||||||| |
seq2  ATTGATATCAGAGGGCCCCAGCCCGTATTGGGTGGCGCCATCCCTAGGCC  100

seq1  AGGCGTTCCCAGGCTGTGTACAAAAACAATCTGAGGGAGACAGAGAACTG  145
      |||||||| ||||||||||||||||||||||||||| |||||||||||||
seq2  AGGCGTTCTCAGGCTGTGTACAAAAACAATCTGAGGAAGACAGAGAACTG  150

seq1  GCCAGCCTATAAGCCGTATTTCTCTGCAGTTTATCCTTCAGTTCCTGTTT  195
      |||||||||| ||| |||||| ||||||||||||||||||||||||||||
seq2  GCCAGCCTAT-AGCAGTATTTTTCTGCAGTTTATCCTTCAGTTCCTGTTT  199

seq1  GAGTTCCTTCCTGGACTTCCCTCGGTGATGGGCTGGGATCTGGAAGAGCA  245
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAGTTCCTTCCTGGACTTCCCTCGGTGATGGG-TGGGATCTGGAAGAGCA  248

seq1  TGCTTAAATACTCTTTTCCCTCCCTCGTTGGTTTTAGTCATGCTCTTTAC  295
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTT-AATACTCTTTTCCCTCCCTCGTTGGTTTTAGTCATGCTCTTTAC  297

seq1  CATAACAATATACGG-AAGCTGGGGAAGTCTTTCACTTGGTCTGGCCCAT  344
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CATAACAATATACGGAAAGCTGGGGAAGTCTTTCACTTGGTCTGGCCCAT  347

seq1  ACCTAGAAGCCTCTTCATAAACTGTTTG-AAAGCAAGTTGTAATGTCTCC  393
      ||||||||||||||||||||| |||||| |||||||||||||||||||||
seq2  ACCTAGAAGCCTCTTCATAAAATGTTTGAAAAGCAAGTTGTAATGTCTCC  397

seq1  AAGGGGGACTTTTGCACTGCTGATTCATTCAGTGCCAGCATTGATTCAAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGACTTTTGCACTGCTGATTCATTCAGTGCCAGCATTGATTCAAA  447

seq1  ACCTGGCGGCTGACCACAGTTCCAGCCAAGCCTGGCAAAACTCACGCACC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCGGCTGACCACAGTTCCAGCCAAGCCTGGCAAAACTCACGCACC  497

seq1  ATGGGGCCTGATAAAGCGGTTTTGGATTTGTGTGTTTTCTTACAGTGCCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCCTGATAAAGCGGTTTTGGATTTGTGTGTTTTCTTACAGTGCCT  547

seq1  TGCATCTCAGCGCTGTTGGAAGTACTAAGCTTCTTACCTGTTTTCTTTCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTCAGCGCTGTTGGAAGTACTAAGCTTCTTACCTGTTTTCTTTCT  597

seq1  TTTTCTTTTAAAAAGATCTCATCTGTAGTCCCAAGAAACTGACAAAGTGC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTAAAAAGATCTCATCTGTAGTCCCAAGAAACTGACAAAGTGC  647

seq1  ACCAGTCTTGCCCAGGAATACAGAACTCAGACATTATACCTAAAAGTAGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCTTGCCCAGGAATACAGAACTCAGACATTATACCTAAAAGTAGG  697

seq1  TTTAGGGATATGTCCCTAAAATGCAGTCCATTCAGTCTGACAGATGAGCC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGATATGTCCCTAAAATGCAGTCCATTCAGTCTGACAGATGAGCC  747

seq1  GGGTGGCCAACAGAATCTTGAAACTTCTGTGTTCTTTGGTCGGTGACACA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGCCAACAGAATCTTGAAACTTCTGTGTTCTTTGGTCGGTGACACA  797

seq1  CAGGATGCTGCTGTTCTTAGAACTGAGTTCATTTCTACAGGGGGT  838
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGCTGCTGTTCTTAGAACTGAGTTCATTTCTACAGGGGGT  842