BAC Information

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BAC

Clone NameB6Ng01-243N23
Chromosome8 (Build37)
Map Location 95,441,936 - 95,600,778
singlet/doubletdoublet
Overlap geneAytl1, LOC100040752, Slc6a2, EG244595, LOC382044
Upstream gene4933436C20Rik, Irx5, Irx6, LOC100041325, Mmp2, Capns2
Downstream geneEs1, LOC676523, Ces3, Es22, AU018778, Ces1, 2310039D24Rik, Ces7, Gnao1, Amfr, Nudt21, Ogfod1, Bbs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243N23.bB6Ng01-243N23.g
ACCGA053144GA053145
length1,1241,094
definitionB6Ng01-243N23.b B6Ng01-243N23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,599,647 - 95,600,778)(95,441,936 - 95,443,038)
sequence
gaattccatgctacattgtttaagagccttttcaaggtgtcaatagtggc
tgttggaacaggaagaagttggaccttagcaggtcatgcaacaagacctt
tggagactttgctcactccatctgaacatggaagctttgggcctgagtgg
gaaaggaatttaccttagtccacccagaacatcatgtctgagacaaggct
agaatttagttttcctggggttctcccacaatgatgctcccccctgcgtc
aacctacaacaggtttcctaccattgtagctgactgtcttggttaatgaa
tgtcttctgagaactatgtagcatgtttacctggtagaggagcatagtca
actacagaccaccattcaaagcccagaaggacaaagccctgtccaggaac
tgtggaaagtgacatctcatagtgcaggtcaccatacaatcatctttcgc
cttggtccagaacatcccaaaaattccatgaagagaagagctacaaattt
gcttctccctccataggagaccccaggaatttccatggtttccatctctc
acccatggcaatgactccaatgaaataatagaaactccttttaaagtttc
taatctctcagtgcatgaccaggcctggatggtgtagttagtctggtgga
atctcagatgttctctcccttcccaggtgctctcaagatgcagttgcagt
acagctactctcagatatgctcagcaccaaaaaggagagcatacctcccc
tgttttccgaagactgtctctacctgaatatttacagccctgccgatttg
acaaaaagcagtctattgcctgtaagtacaggaaccatttgtccagactt
taagtttgagcatcttgatcttctgtgggcttagaaggtgataaaggcag
cagggtttcaggagcacataggtcaggagtgatccagggacacagcttcc
ttccagttttcacttgaatttcttttccaatgatgtcagatttttttgtt
agagagcactatatagttcacatgtatttccaagtcttcacagatgaaag
aaaagaatggctaatcttacttagagaatctatcccattgccaagtagtc
gtgattcataaagtcacactaggg
gaattcaaaagtttcgccctaaagcacccagaatatgccaagatatttac
cacatacctagacctccagacatgccatgtattctccttgccagaagagg
tccagacagctccctctgttgctagtaataaagtcagtcctgagagccag
gaggagggcacctcagacaaaaaggtggactgagccagtgttcccagtga
ggaaaggcgacgcgggagagctgttcactggccacattgtgaatgtgttt
atcaactaatgttgttcacgatagaaagcttttttttttactaagatgac
atattttcttccaaaagtgttttttattaacctgcctgtatcaagtaagc
tcctttcatctcacattgtgccctactggttgtgttgactgaggctaagt
actgtatattttttaatgaaaattttcagtttacttttcataataaataa
atccatcagtcttactctccactggtcagcaattaatcaacaccgcgtgt
ttagcaagtgcaaacaattttcagtcgtttcacatgtaatcatgtacgtt
ttctctagtcccttccctttctggaagcaaggatgggaatgtggaaaaaa
actgcagggttttgtacctccatctttaccggcttaaatttccatttaaa
ttttagtttcctggctgagactttctaagcgcacacgctccccttgactt
gcatctggatagcagatcctttcgcactctccatagtatagaagggacct
tgttttaaagacgattgcagtgggccataagctgggaattgccttattga
agggaacagtgattgcctaatgagaaaatgaattgtttgctacagagctg
aattgaatttaagttggctggttccgaagatagcactttcccaataagca
aatcagatttgttcttttttacataatggccaattggtgtattttaccgt
gcagtccaagagagagctttgtcctgttaatttttcctcacaaactttag
agtttgtcagaagcttcacatggaaaaagagagtcttcagcatgtgccag
agccaagatcaaaaagctagtgtacgtggtgggctgtgtctacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_95599647_95600778
seq2: B6Ng01-243N23.b_48_1171 (reverse)

seq1  CCCTAGTTGTGACTTTATTGGAAATCACGACTTACCTGCCATGGGAATAG  50
      |||||| |||||||||||    ||||||||| ||| || ||  || ||| 
seq2  CCCTAG-TGTGACTTTAT---GAATCACGAC-TACTTGGCAATGGGATA-  44

seq1  GATTCTCCTAAGTAAGATTAGCCATTCTTTTCCTTTCATCCTGTGAAGAC  100
      |||||| |||||||||||||||||||||||| ||||||| ||||||||||
seq2  GATTCT-CTAAGTAAGATTAGCCATTCTTTT-CTTTCAT-CTGTGAAGAC  91

seq1  TTGGGAAATTACATGTGAACTATATAGTGCTCTCT---ACAAAAATCTGA  147
      ||||  || ||||||||||||||||||||||||||   | ||||||||||
seq2  TTGG--AAATACATGTGAACTATATAGTGCTCTCTAACAAAAAAATCTGA  139

seq1  CATCATTGGAAAAGAAATTCAAGTGAAAACTGGAAGGAAGCTGTGGTCCC  197
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CATCATTGGAAAAGAAATTCAAGTGAAAACTGGAAGGAAGCTGT-GTCCC  188

seq1  TGGATCACTCCTGACCTATGTGCTCCTG-AACCCTGCTGCCTTTATCACC  246
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGGATCACTCCTGACCTATGTGCTCCTGAAACCCTGCTGCCTTTATCACC  238

seq1  TTCTAAGCCCACAGAAGATCAAGATGCTCAAACTTAAAGTCTGGACAAAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGCCCACAGAAGATCAAGATGCTCAAACTTAAAGTCTGGACAAAT  288

seq1  GGTTCCTGTACTTACAGGCAATAGACTGCTTTTTGTCAAATCGGCAGGGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTGTACTTACAGGCAATAGACTGCTTTTTGTCAAATCGGCAGGGC  338

seq1  TGTAAATATTCAGGTAGAGACAGTCTTCGGAAAACAGGGGAGGTATGCTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATATTCAGGTAGAGACAGTCTTCGGAAAACAGGGGAGGTATGCTC  388

seq1  TCCTTTTTGGTGCTGAGCATATCTGAGAGTAGCTGTACTGCAACTGCATC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTGGTGCTGAGCATATCTGAGAGTAGCTGTACTGCAACTGCATC  438

seq1  TTGAGAGCACCTGGGAAGGGAGAGAACATCTGAGATTCCACCAGACTAAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGCACCTGGGAAGGGAGAGAACATCTGAGATTCCACCAGACTAAC  488

seq1  TACACCATCCAGGCCTGGTCATGCACTGAGAGATTAGAAACTTTAAAAGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCATCCAGGCCTGGTCATGCACTGAGAGATTAGAAACTTTAAAAGG  538

seq1  AGTTTCTATTATTTCATTGGAGTCATTGCCATGGGTGAGAGATGGAAACC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTATTATTTCATTGGAGTCATTGCCATGGGTGAGAGATGGAAACC  588

seq1  ATGGAAATTCCTGGGGTCTCCTATGGAGGGAGAAGCAAATTTGTAGCTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAATTCCTGGGGTCTCCTATGGAGGGAGAAGCAAATTTGTAGCTCT  638

seq1  TCTCTTCATGGAATTTTTGGGATGTTCTGGACCAAGGCGAAAGATGATTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCATGGAATTTTTGGGATGTTCTGGACCAAGGCGAAAGATGATTG  688

seq1  TATGGTGACCTGCACTATGAGATGTCACTTTCCACAGTTCCTGGACAGGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGACCTGCACTATGAGATGTCACTTTCCACAGTTCCTGGACAGGG  738

seq1  CTTTGTCCTTCTGGGCTTTGAATGGTGGTCTGTAGTTGACTATGCTCCTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCCTTCTGGGCTTTGAATGGTGGTCTGTAGTTGACTATGCTCCTC  788

seq1  TACCAGGTAAACATGCTACATAGTTCTCAGAAGACATTCATTAACCAAGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGTAAACATGCTACATAGTTCTCAGAAGACATTCATTAACCAAGA  838

seq1  CAGTCAGCTACAATGGTAGGAAACCTGTTGTAGGTTGACGCAGGGGGGAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGCTACAATGGTAGGAAACCTGTTGTAGGTTGACGCAGGGGGGAG  888

seq1  CATCATTGTGGGAGAACCCCAGGAAAACTAAATTCTAGCCTTGTCTCAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTGTGGGAGAACCCCAGGAAAACTAAATTCTAGCCTTGTCTCAGA  938

seq1  CATGATGTTCTGGGTGGACTAAGGTAAATTCCTTTCCCACTCAGGCCCAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGTTCTGGGTGGACTAAGGTAAATTCCTTTCCCACTCAGGCCCAA  988

seq1  AGCTTCCATGTTCAGATGGAGTGAGCAAAGTCTCCAAAGGTCTTGTTGCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCATGTTCAGATGGAGTGAGCAAAGTCTCCAAAGGTCTTGTTGCA  1038

seq1  TGACCTGCTAAGGTCCAACTTCTTCCTGTTCCAACAGCCACTATTGACAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGCTAAGGTCCAACTTCTTCCTGTTCCAACAGCCACTATTGACAC  1088

seq1  CTTGAAAAGGCTCTTAAACAATGTAGCATGGAATTC  1132
      ||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAAGGCTCTTAAACAATGTAGCATGGAATTC  1124

seq1: chr8_95441936_95443038
seq2: B6Ng01-243N23.g_69_1162

seq1  GAATTCAAAAGTTTCGCCCTAAAGCACCCAGAATATGCCAAGATATTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGTTTCGCCCTAAAGCACCCAGAATATGCCAAGATATTTAC  50

seq1  CACATACCTAGACCTCCAGACATGCCATGTATTCTCCTTGCCAGAAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACCTAGACCTCCAGACATGCCATGTATTCTCCTTGCCAGAAGAGG  100

seq1  TCCAGACAGCTCCCTCTGTTGCTAGTAATAAAGTCAGTCCTGAGAGCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACAGCTCCCTCTGTTGCTAGTAATAAAGTCAGTCCTGAGAGCCAG  150

seq1  GAGGAGGGCACCTCAGACAAAAAGGTGGACTGAGCCAGTGTTCCCAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGGCACCTCAGACAAAAAGGTGGACTGAGCCAGTGTTCCCAGTGA  200

seq1  GGAAAGGCGACGCGGGAGAGCTGTTCACTGGCCACATTGTGAATGTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGCGACGCGGGAGAGCTGTTCACTGGCCACATTGTGAATGTGTTT  250

seq1  ATCAACTAATGTTGTTCACGATAGAAAGCTTTTTTTTTTACTAAGATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTAATGTTGTTCACGATAGAAAGCTTTTTTTTTTACTAAGATGAC  300

seq1  ATATTTTCTTCCAAAAGTGTTTTTTATTAACCTGCCTGTATCAAGTAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCTTCCAAAAGTGTTTTTTATTAACCTGCCTGTATCAAGTAAGC  350

seq1  TCCTTTCATCTCACATTGTGCCCTACTGGTTGTGTTGACTGAGGCTAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCATCTCACATTGTGCCCTACTGGTTGTGTTGACTGAGGCTAAGT  400

seq1  ACTGTATATTTTTTAATGAAAATTTTCAGTTTACTTTTCATAATAAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATATTTTTTAATGAAAATTTTCAGTTTACTTTTCATAATAAATAA  450

seq1  ATCCATCAGTCTTACTCTCCACTGGTCAGCAATTAATCAACACCGCGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCAGTCTTACTCTCCACTGGTCAGCAATTAATCAACACCGCGTGT  500

seq1  TTAGCAAGTGCAAACAATTTTCAGTCGTTTCACATGTAATCATGTACGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAGTGCAAACAATTTTCAGTCGTTTCACATGTAATCATGTACGTT  550

seq1  TTCTCTAGTCCCTTCCCTTTCTGGAAGCAAGGATGGGAATGTGGAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAGTCCCTTCCCTTTCTGGAAGCAAGGATGGGAATGTGGAAAAAA  600

seq1  ACTGCAGGGTTTTGTACCTCCATCTTTACCGGCTTAAATTTCCATTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGGGTTTTGTACCTCCATCTTTACCGGCTTAAATTTCCATTTAAA  650

seq1  TTTTAGTTTCCTGGCTGAGACTTTCTAAGCGCACACGCTCCCCTTGACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTTTCCTGGCTGAGACTTTCTAAGCGCACACGCTCCCCTTGACTT  700

seq1  GCATCTGGATAGCAGATCCTTTCGCACTCTCCATAGTATAGAAGGGACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGGATAGCAGATCCTTTCGCACTCTCCATAGTATAGAAGGGACCT  750

seq1  TGTTTTAAAGACGATTGCAGTGGGCCATAAGCTGGGAATTGCCTTATTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAAAGACGATTGCAGTGGGCCATAAGCTGGGAATTGCCTTATTGA  800

seq1  AGGGAACAGTGATTGCCTAATGAGAAAATGAATTGTTTGCTACAGAGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACAGTGATTGCCTAATGAGAAAATGAATTGTTTGCTACAGAGCTG  850

seq1  AATTGAATTTAAGTTGGCTGGTTCCGAAGATAGCACTTTCCCAATAAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAATTTAAGTTGGCTGGTTCCGAAGATAGCACTTTCCCAATAAGCA  900

seq1  AATCAGATTTGTTCTTTTTTACATAATGGCCAAATTGGTGTATTTTACCG  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AATCAGATTTGTTCTTTTTTACATAATGGCC-AATTGGTGTATTTTACCG  949

seq1  TGCAGTCCAAGAGAGAGCTTTGTCCTGTTAATTTTTCCTCACAAACTTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCCAAGAGAGAGCTTTGTCCTGTTAATTTTTCCTCACAAACTTTA  999

seq1  GAGTTTGTCAGAAATTTCCACATGGAAAAGAGA-AGCCTCCAGCATGTTG  1049
      |||||||||||||  || ||||||||||| ||| || || ||||||| ||
seq2  GAGTTTGTCAGAAGCTT-CACATGGAAAA-AGAGAGTCTTCAGCATG-TG  1046

seq1  CCAAGAGCCAAAGAATCAAAAAGCTTAGTTTGTTAACGTG--TGGCTGTG  1097
      || ||||||||   |||||||||| |||| |    |||||   |||||||
seq2  CC-AGAGCCAA--GATCAAAAAGC-TAGTGT----ACGTGGTGGGCTGTG  1088

seq1  TCTACC  1103
      ||||||
seq2  TCTACC  1094