BAC Information

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BAC

Clone NameB6Ng01-244I18
Chromosome8 (Build37)
Map Location 109,455,078 - 109,556,234
singlet/doubletdoublet
Overlap geneSntb2, Vps4a
Upstream genePskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703
Downstream geneCog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244I18.bB6Ng01-244I18.g
ACCGA053653GA053654
length1,0961,066
definitionB6Ng01-244I18.b B6Ng01-244I18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,555,136 - 109,556,234)(109,455,078 - 109,456,166)
sequence
gaattccatctaatttcaagcctagaacagaaatttactcctgtatttct
acttggagcagccaccaccaccaccagatatgcaaatatcactcactctt
tgatgctctggctaaagtcccttccttcataaagtcttacttggttccac
ccaaacgcttactttattagcaaaggcttaccgagtacatgatatgctga
acctatgttataattgctttccctgaattattgtctcaagtcgtctgaca
accaccctacaagggcactgcctattttagtgatgaggaaatccaacatt
ccaacatccaaaacctagacacactggtgagtggcagggctgggatttaa
acacaagcctgaggcctgacagtgtttatgctttctgacagctctagaac
gagcccttccttcatccgggcggcgccaccccagcatcaccctgcaggac
gtagggaatgaatgaagggtggctggccgagaaacccggggctcgttgga
agcagctcagggggctgccagggcgcctggcaggagcgggtgaacgccgc
tcccggagcgacctgcgggacccgggcgcgctcagggggaggcggcgccg
ctgcaaggcggcagttcagccccggctgcgcgtcctgggctccggcccgc
cggttcggcttgggccggggctcagtggagacgtccttcgggctccgagc
gcgggagaggctgcagcgcgggtgggacgaggcagcctgacagggaccgc
caggccgggctccgaggaggccaccgcccgtccgctccgcggcccgcagc
cctgccgccttgggcctccgcgggcgcgccgcacccaagtacctggaggg
ttgacgttgtcatttcatatcctgggtccgccccacaccccgcggtgctg
cttgcggcctcggtccggctcggagagccgaggtggtgggttccgcccgc
ttagagcccggcagtcgctctcggcgcgggcagagctgccactagcagtg
ggagcccgagtccgaggggtgacgaggagcgcggcccagagcggcccagc
ccgagtcacgcgctgccgccctgtgtgccattgactgcactgcaga
gaattctctaagcttgtctccctgcccttaggaacccatgaaaacagatg
tgtaccctgtttcagatttcattatgcacactaagtatatttcaccaact
acttgaaatttcctagatggtaatttttgctctgtgaggaaccaataact
ctcatagggattatttgagaagacgctggcaccggaagcaccgctgccaa
tcagtcacaagcttaatgagtttcctctctgcgagaggcagtagtttcca
agcagtgggaagcaaaaataatccataggtggtcttcgccttcctggaat
atataacttaattgggcattccagcagaggcctagaattacatcattcaa
aggaaaagccccaaagacttagggagtcacagaaagctgggatgaggtct
tgctggggagtttaaggtacccgaggtgttctgaaaggcctgggtatgga
tgtgtgaggcatcactggagaatgctggctgggtgagagtatctgagctt
aaagtagtgactcaatgtggaaatgcagtgatgaaggtggactttttacc
ttggaagcaggaaggtcattcttggctacacagcaaatttggagctaacc
tggtttacattgtcttgggaaagtgaggggtggggggactcagagtttgg
gagatagtctagtaggtagagctcttgctgcatatctgtgaaaacctaag
ttcgaatctctagaaccgaaatgaagctgaacgaaactaaccttgctccc
acagcaagatgagagtagaaacaagaaccctggaagttcctgggccagct
agcctggggtatgcagcaaccaaggaacctgtcccaaaacacagtgggaa
gagggactgactctgattagtctctaccacttgtatgtgtgctatggctt
ctgtgtacttacacacacacacacacacacacacacacacacacacaggt
ggcaaagttgagcttcagtggcagccagctatgtatgtctaggcaagact
gcttcaaatatgtttttttagagaatactccaagaaaaactttatacttc
ctgtgggttaaatact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_109555136_109556234
seq2: B6Ng01-244I18.b_45_1140 (reverse)

seq1  TCTGCAGTTGCAGGCCATGGC-CACAGGGCGGCAGCCGCGTGACTCGGGC  49
      ||||||| ||||| | ||||| ||||||||||||| ||||||||||||||
seq2  TCTGCAG-TGCAGTCAATGGCACACAGGGCGGCAG-CGCGTGACTCGGGC  48

seq1  TGGGCCGCTCTGGGCCGCGCTCCTCGTTCACCCTCGGACTC-GGCTCCCA  98
      |||||||||||||||||||||||||||   ||||||||||| ||||||||
seq2  TGGGCCGCTCTGGGCCGCGCTCCTCGTCACCCCTCGGACTCGGGCTCCCA  98

seq1  CTGCTAGTGGCAGCTCTGCCCGCGCCGAGAGCCGACCTGCCGGGCTCCTA  148
      ||||||||||||||||||||||||||||||| ||| |||||||||| |||
seq2  CTGCTAGTGGCAGCTCTGCCCGCGCCGAGAG-CGA-CTGCCGGGCT-CTA  145

seq1  AGC-GGCGG-ACCCACCACCTCGGCTCCTCCGAGCCGGACCGAGGCCGCA  196
      ||| ||||| |||||||||||||||| |||||||||||||||||||||||
seq2  AGCGGGCGGAACCCACCACCTCGGCT-CTCCGAGCCGGACCGAGGCCGCA  194

seq1  AGCAGCACCGCGGGGTGTGGGGCGGACCCAGGATATGAAATGACAACGTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCACCGCGGGGTGTGGGGCGGACCCAGGATATGAAATGACAACGTC  244

seq1  AACCCTCCAGGTACTTGGGTGCGGCGCGCCCGCGGAGGCCCAAGGCGGCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCCAGGTACTTGGGTGCGGCGCGCCCGCGGAGGCCCAAGGCGGCA  294

seq1  GGGCCTGCGGGCCGCGGAGCGGACGGGCGGTGGCCTCCTCGGAGCCCGGC  346
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGG-CTGCGGGCCGCGGAGCGGACGGGCGGTGGCCTCCTCGGAGCCCGGC  343

seq1  CTGGCGGTCCCTGTCAGGCTGCCTCGTCCCACCCGCGCTGCAGCCTCTCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGGTCCCTGTCAGGCTGCCTCGTCCCACCCGCGCTGCAGCCTCTCC  393

seq1  CGCGCTCGGAGCCCGAAGGACGTCTCCACTGAGCCCCGGCCCAAGCCGAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCTCGGAGCCCGAAGGACGTCTCCACTGAGCCCCGGCCCAAGCCGAA  443

seq1  CCGGCGGGCCGGAGCCCAGGACGCGCAGCCGGGGCTGAACTGCCGCCTTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCGGGCCGGAGCCCAGGACGCGCAGCCGGGGCTGAACTGCCGCCTTG  493

seq1  CAGCGGCGCCGCCTCCCCCTGAGCGCGCCCGGGTCCCGCAGGTCGCTCCG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGGCGCCGCCTCCCCCTGAGCGCGCCCGGGTCCCGCAGGTCGCTCCG  543

seq1  GGAGCGGCGTTCACCCGCTCCTGCCAGGCGCCCTGGCAGCCCCCTGAGCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCGGCGTTCACCCGCTCCTGCCAGGCGCCCTGGCAGCCCCCTGAGCT  593

seq1  GCTTCCAACGAGCCCCGGGTTTCTCGGCCAGCCACCCTTCATTCATTCCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCAACGAGCCCCGGGTTTCTCGGCCAGCCACCCTTCATTCATTCCC  643

seq1  TACGTCCTGCAGGGTGATGCTGGGGTGGCGCCGCCCGGATGAAGGAAGGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTCCTGCAGGGTGATGCTGGGGTGGCGCCGCCCGGATGAAGGAAGGG  693

seq1  CTCGTTCTAGAGCTGTCAGAAAGCATAAACACTGTCAGGCCTCAGGCTTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTCTAGAGCTGTCAGAAAGCATAAACACTGTCAGGCCTCAGGCTTG  743

seq1  TGTTTAAATCCCAGCCCTGCCACTCACCAGTGTGTCTAGGTTTTGGATGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAATCCCAGCCCTGCCACTCACCAGTGTGTCTAGGTTTTGGATGT  793

seq1  TGGAATGTTGGATTTCCTCATCACTAAAATAGGCAGTGCCCTTGTAGGGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGTTGGATTTCCTCATCACTAAAATAGGCAGTGCCCTTGTAGGGT  843

seq1  GGTTGTCAGACGACTTGAGACAATAATTCAGGGAAAGCAATTATAACATA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTCAGACGACTTGAGACAATAATTCAGGGAAAGCAATTATAACATA  893

seq1  GGTTCAGCATATCATGTACTCGGTAAGCCTTTGCTAATAAAGTAAGCGTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGCATATCATGTACTCGGTAAGCCTTTGCTAATAAAGTAAGCGTT  943

seq1  TGGGTGGAACCAAGTAAGACTTTATGAAGGAAGGGACTTTAGCCAGAGCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGAACCAAGTAAGACTTTATGAAGGAAGGGACTTTAGCCAGAGCA  993

seq1  TCAAAGAGTGAGTGATATTTGCATATCTGGTGGTGGTGGTGGCTGCTCCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAGTGAGTGATATTTGCATATCTGGTGGTGGTGGTGGCTGCTCCA  1043

seq1  AGTAGAAATACAGGAGTAAATTTCTGTTCTAGGCTTGAAATTAGATGGAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAATACAGGAGTAAATTTCTGTTCTAGGCTTGAAATTAGATGGAA  1093

seq1  TTC  1099
      |||
seq2  TTC  1096

seq1: chr8_109455078_109456166
seq2: B6Ng01-244I18.g_66_1131

seq1  GAATTCTCTAAGCTTGTCTCCCTGCCCTTAGGAACCCATGAAAACAGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAGCTTGTCTCCCTGCCCTTAGGAACCCATGAAAACAGATG  50

seq1  TGTACCCTGTTTCAGATTTCATTATGCACACTAAGTATATTTCACCAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCCTGTTTCAGATTTCATTATGCACACTAAGTATATTTCACCAACT  100

seq1  ACTTGAAATTTCCTAGATGGTAATTTTTGCTCTGTGAGGAACCAATAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAATTTCCTAGATGGTAATTTTTGCTCTGTGAGGAACCAATAACT  150

seq1  CTCATAGGGATTATTTGAGAAGACGCTGGCACCGGAAGCACCGCTGCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGGGATTATTTGAGAAGACGCTGGCACCGGAAGCACCGCTGCCAA  200

seq1  TCAGTCACAAGCTTAATGAGTTTCCTCTCTGCGAGAGGCAGTAGTTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCACAAGCTTAATGAGTTTCCTCTCTGCGAGAGGCAGTAGTTTCCA  250

seq1  AGCAGTGGGAAGCAAAAATAATCCATAGGTGGTCTTCGCCTTCCTGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGGGAAGCAAAAATAATCCATAGGTGGTCTTCGCCTTCCTGGAAT  300

seq1  ATATAACTTAATTGGGCATTCCAGCAGAGGCCTAGAATTACATCATTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACTTAATTGGGCATTCCAGCAGAGGCCTAGAATTACATCATTCAA  350

seq1  AGGAAAAGCCCCAAAGACTTAGGGAGTCACAGAAAGCTGGGATGAGGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGCCCCAAAGACTTAGGGAGTCACAGAAAGCTGGGATGAGGTCT  400

seq1  TGCTGGGGAGTTTAAGGTACCCGAGGTGTTCTGAAAGGCCTGGGTATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGGAGTTTAAGGTACCCGAGGTGTTCTGAAAGGCCTGGGTATGGA  450

seq1  TGTGTGAGGCATCACTGGAGAATGCTGGCTGGGTGAGAGTATCTGAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGGCATCACTGGAGAATGCTGGCTGGGTGAGAGTATCTGAGCTT  500

seq1  AAAGTAGTGACTCAATGTGGAAATGCAGTGATGAAGGTGGACTTTTTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGTGACTCAATGTGGAAATGCAGTGATGAAGGTGGACTTTTTACC  550

seq1  TTGGAAGCAGGAAGGTCATTCTTGGCTACACAGCAAATTTGGAGCTAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGCAGGAAGGTCATTCTTGGCTACACAGCAAATTTGGAGCTAACC  600

seq1  TGGTTTACATTGTCTTGGGAAAGTGAGGGGTGGGGGGACTCAGAGTTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTACATTGTCTTGGGAAAGTGAGGGGTGGGGGGACTCAGAGTTTGG  650

seq1  GAGATAGTCTAGTAGGTAGAGCTCTTGCTGCATATCTGTGAAAACCTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAGTCTAGTAGGTAGAGCTCTTGCTGCATATCTGTGAAAACCTAAG  700

seq1  TTCGAATCTCTAGAACCGAAATGAAGCTGAACGAAACTAACCTTGCTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAATCTCTAGAACCGAAATGAAGCTGAACGAAACTAACCTTGCTCCC  750

seq1  ACAGCAAGATGAGAGTAGAAACAAGAACCCTGGAAGTTCCTGGGCCAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAGATGAGAGTAGAAACAAGAACCCTGGAAGTTCCTGGGCCAGCT  800

seq1  AGCCTGGGGTATGCAGCAACCAAGGAACCTGTCCCAAAACACAGTGGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGGGTATGCAGCAACCAAGGAACCTGTCCCAAAACACAGTGGGAA  850

seq1  GAGGGACTGACTCTGATTAGTCTCTACCAC-TGTATGTGTGCTATGGCTT  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAGGGACTGACTCTGATTAGTCTCTACCACTTGTATGTGTGCTATGGCTT  900

seq1  CTGTGTACCTACACACACACACACACACACACACACACACACACACAAGT  949
      |||||||| |||||||||||||||||||||||||||||||||||||| ||
seq2  CTGTGTACTTACACACACACACACACACACACACACACACACACACAGGT  950

seq1  GGCAAAAGGTTTGAGGCTTCAGTGCCAGCCAGGCCTATGTAGTGGTCTAG  999
      ||||||    |||| ||||||||| |||||||  |||||||   ||||||
seq2  GGCAAA---GTTGA-GCTTCAGTGGCAGCCAG--CTATGTA--TGTCTAG  992

seq1  GCCAAAGACATTTGCTTCAAAATAATGTTTTTTTTAAGAGAAATACTCCC  1049
      ||  |||||   |||||||||   ||||||||||  |||| |||||| ||
seq2  GC--AAGAC---TGCTTCAAA--TATGTTTTTTT--AGAG-AATACT-CC  1031

seq1  AAGAAATACTTTTATTATCTTCCCTGTGGGTTTAAATATT  1089
      |||||| |||    ||||  | |||||||| ||||||| |
seq2  AAGAAAAACT----TTATACTTCCTGTGGG-TTAAATACT  1066