BAC Information

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BAC

Clone NameB6Ng01-244L17
Chromosome8 (Build37)
Map Location 83,249,997 - 83,406,816
singlet/doubletdoublet
Overlap geneSmarca5, Gab1, LOC666237, LOC100039496
Upstream geneAnapc10, LOC100039439, Hhip, LOC546075, Gypa, Frem3
Downstream geneLOC234501, LOC100039518, Usp38, EG70793, LOC236010, LOC384852, Inpp4b
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244L17.bB6Ng01-244L17.g
ACCGA053794GA053795
length1,0221,133
definitionB6Ng01-244L17.b B6Ng01-244L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,405,799 - 83,406,816)(83,249,997 - 83,251,140)
sequence
gaattctccaacatatgcctaaatatttatatatttttcttccataaaat
gtatcaactaaattatagacatttggaggttaattacctgtaatattttt
ttctttccaagatagaggaggagagaacgtgtctacccttcctcactatg
gtattccagtatcagacattctgtaaacatttgctgtggaataaaactca
gcccatttatatataatagcatttcccagaatgccaattatttacttatt
tattcatttattttttttggagaggttctcacactgcctcagccatctac
atgctaacatcagaagcatgcgccatcacactgcaaatcttataatgcac
atacataaatatgattcaatacatgatgtgaaagtggtataatttaaata
taatatataattttttatataataatgtgtggtggtttgaatatgtatag
tccccatagactcatgtgtttgaatgcttagtccataaggagtggcacta
ttaggaggcgtggccttgttggaggaagtatgtgcgtgtttggagcggga
gggctttgaaatttcctatgttcaagctatgcctggtgtgtcactcagtc
tccttttgctgcttgtgcaatatgtggaggcatatctcatgggctcaagc
ataaatcttaggcaatacttttaaaaattattcattttatgtgtatgtgt
gtatgtgtgttttgcttacatgtatgcctgtgatccatgtgcatgcctga
tacctatggagactggaaaaggatagctgaccttctgggaccatagaggt
tttaagagtaaaatccagattctctgcaagagcaagtcaggtgttcttca
tccatagccattttgccagggtcttaatgcaacactttaaattcattctt
ctttttttggagattggttcttatactctatcaagcttaggcttgaccta
aaactcacataatccctctgccttagttcccagtgctggggttgcaggtg
taagtttctactgcagtgtagc

gaattctctcactatttctgacaactgaaagaaccaaagcccagtattag
aacattctgaataaatatcaaactctcagacacaaaaaatgttcatatta
agtatcaaattaccttagatttttcattttttatcctgtgagcttcatct
ataactaagtatctccagttgaattttttgaacacagacttctctttaat
aagcatttcataagatgtgacacacacatcccactctcctggtaataaaa
catccctgacaaatgcagcctgtaaaacaaaaaaaattacacaactcaac
tcaattacacattaaattcacttaacaagtaatcaaaaacaagaaaaaat
tagagtattaaacagagctaataaataagcatttaaagctaccatcctat
cactgaaattacttcattatcactttaatgtcagttttaacttagtttca
aaaagttgaagtgagtcacaaaattccatagcttaactttaaaatgtctt
tccaaagttccacagatcttgccgttcttaggaagcagggttaagaaaga
cctgacagttggtagtagatggtctcattcctctgatttgtagatgtatt
ggcacattactgttattattcttattttatagataaggatatgaagtaaa
aaagcagaattaattgacttccccaaaaagcaacttggtaacttaaaata
acccacataatttacctactgaggagcaaagaaatctagactgctgctga
aaagatggctcagtgtttaagaacacttgttcttataaagactaagattc
agtcccagcacccacacagtggctcccaaccatccgtaactctagttcca
gggatttgactcccttttctagcctcagtggaaaccacggatgcaggcaa
agtacccataaatataaaacattattttaaaaaactaacctaattaagta
taaaatcattaattcatcatttaatcaatgaaggcaattgattatcccca
actccaattctaagttctttattcttatagtgtcatgatttccatgactt
tgttccaaaagaatgtgcctaggagtcatagttactccacattgtattca
taacagctcatctattactaatgactccactca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_83405799_83406816
seq2: B6Ng01-244L17.b_49_1069 (reverse)

seq1  CTACACCTGCAGTTAGAAACTTACACCTGCAACCCCAGCACTTGGGAAAC  50
      ||||| |||||| |||||||||||||||||||||||||||||  || |||
seq2  CTACA-CTGCAG-TAGAAACTTACACCTGCAACCCCAGCACT--GGGAAC  46

seq1  TGAGGCAGGAGGATTATTGTGAGTTCTAGGTC-AGCCTAAGCTTGATAGA  99
      | ||||||  |||||| |||||||| |||||| |||||||||||||||||
seq2  TAAGGCAGAGGGATTA-TGTGAGTTTTAGGTCAAGCCTAAGCTTGATAGA  95

seq1  GTATAAGAACCAATCTCC-AAAAAAGAAG-ATGAATTTAAAGTGTTGCAT  147
      |||||||||||||||||| |||||||||| ||||||||||||||||||||
seq2  GTATAAGAACCAATCTCCAAAAAAAGAAGAATGAATTTAAAGTGTTGCAT  145

seq1  TAAGA-CCTGGC-AAATGGCTCTGGGTGAAGAACA-CTGGC-TGCTCTTG  193
      ||||| |||||| |||||||| ||| ||||||||| ||| | ||||||||
seq2  TAAGACCCTGGCAAAATGGCTATGGATGAAGAACACCTGACTTGCTCTTG  195

seq1  CAGAGAATCTGGATTTTACTCTT-AAACCTCTATGGTCCCAGAAGGTCAG  242
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAGAGAATCTGGATTTTACTCTTAAAACCTCTATGGTCCCAGAAGGTCAG  245

seq1  CTATCCTTTTCCAGTCTCCATAGGTATCAGGCATGCACATGGATCACAGG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTTTTCCAGTCTCCATAGGTATCAGGCATGCACATGGATCACAGG  295

seq1  CATACATGTAAGCAAAACACACATACACACATACACATAAAATGAATAAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATGTAAGCAAAACACACATACACACATACACATAAAATGAATAAT  345

seq1  TTTTAAAAGTATTGCCTAAGATTTATGCTTGAGCCCATGAGATATGCCTC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGTATTGCCTAAGATTTATGCTTGAGCCCATGAGATATGCCTC  395

seq1  CACATATTGCACAAGCAGCAAAAGGAGACTGAGTGACACACCAGGCATAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATTGCACAAGCAGCAAAAGGAGACTGAGTGACACACCAGGCATAG  445

seq1  CTTGAACATAGGAAATTTCAAAGCCCTCCCGCTCCAAACACGCACATACT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACATAGGAAATTTCAAAGCCCTCCCGCTCCAAACACGCACATACT  495

seq1  TCCTCCAACAAGGCCACGCCTCCTAATAGTGCCACTCCTTATGGACTAAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAACAAGGCCACGCCTCCTAATAGTGCCACTCCTTATGGACTAAG  545

seq1  CATTCAAACACATGAGTCTATGGGGACTATACATATTCAAACCACCACAC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAACACATGAGTCTATGGGGACTATACATATTCAAACCACCACAC  595

seq1  ATTATTATATAAAAAATTATATATTATATTTAAATTATACCACTTTCACA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATATAAAAAATTATATATTATATTTAAATTATACCACTTTCACA  645

seq1  TCATGTATTGAATCATATTTATGTATGTGCATTATAAGATTTGCAGTGTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTATTGAATCATATTTATGTATGTGCATTATAAGATTTGCAGTGTG  695

seq1  ATGGCGCATGCTTCTGATGTTAGCATGTAGATGGCTGAGGCAGTGTGAGA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCGCATGCTTCTGATGTTAGCATGTAGATGGCTGAGGCAGTGTGAGA  745

seq1  ACCTCTCCAAAAAAAATAAATGAATAAATAAGTAAATAATTGGCATTCTG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCCAAAAAAAATAAATGAATAAATAAGTAAATAATTGGCATTCTG  795

seq1  GGAAATGCTATTATATATAAATGGGCTGAGTTTTATTCCACAGCAAATGT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGCTATTATATATAAATGGGCTGAGTTTTATTCCACAGCAAATGT  845

seq1  TTACAGAATGTCTGATACTGGAATACCATAGTGAGGAAGGGTAGACACGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAATGTCTGATACTGGAATACCATAGTGAGGAAGGGTAGACACGT  895

seq1  TCTCTCCTCCTCTATCTTGGAAAGAAAAAAATATTACAGGTAATTAACCT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCTCCTCTATCTTGGAAAGAAAAAAATATTACAGGTAATTAACCT  945

seq1  CCAAATGTCTATAATTTAGTTGATACATTTTATGGAAGAAAAATATATAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGTCTATAATTTAGTTGATACATTTTATGGAAGAAAAATATATAA  995

seq1  ATATTTAGGCATATGTTGGAGAATTC  1018
      ||||||||||||||||||||||||||
seq2  ATATTTAGGCATATGTTGGAGAATTC  1021


seq1: chr8_83249997_83251140
seq2: B6Ng01-244L17.g_70_1202

seq1  GAATTCTCTCACTATTTCTGACAACTGAAAGAACCAAAGCCCAGTATTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCACTATTTCTGACAACTGAAAGAACCAAAGCCCAGTATTAG  50

seq1  AACATTCTGAATAAATATCAAACTCTCAGACACAAAAAATGTTCATATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCTGAATAAATATCAAACTCTCAGACACAAAAAATGTTCATATTA  100

seq1  AGTATCAAATTACCTTAGATTTTTCATTTTTTATCCTGTGAGCTTCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCAAATTACCTTAGATTTTTCATTTTTTATCCTGTGAGCTTCATCT  150

seq1  ATAACTAAGTATCTCCAGTTGAATTTTTTGAACACAGACTTCTCTTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTAAGTATCTCCAGTTGAATTTTTTGAACACAGACTTCTCTTTAAT  200

seq1  AAGCATTTCATAAGATGTGACACACACATCCCACTCTCCTGGTAATAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTCATAAGATGTGACACACACATCCCACTCTCCTGGTAATAAAA  250

seq1  CATCCCTGACAAATGCAGCCTGTAAAACAAAAAAAATTACACAACTCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTGACAAATGCAGCCTGTAAAACAAAAAAAATTACACAACTCAAC  300

seq1  TCAATTACACATTAAATTCACTTAACAAGTAATCAAAAACAAGAAAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTACACATTAAATTCACTTAACAAGTAATCAAAAACAAGAAAAAAT  350

seq1  TAGAGTATTAAACAGAGCTAATAAATAAGCATTTAAAGCTACCATCCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTATTAAACAGAGCTAATAAATAAGCATTTAAAGCTACCATCCTAT  400

seq1  CACTGAAATTACTTCATTATCACTTTAATGTCAGTTTTAACTTAGTTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAATTACTTCATTATCACTTTAATGTCAGTTTTAACTTAGTTTCA  450

seq1  AAAAGTTGAAGTGAGTCACAAAATTCCATAGCTTAACTTTAAAATGTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTGAAGTGAGTCACAAAATTCCATAGCTTAACTTTAAAATGTCTT  500

seq1  TCCAAAGTTCCACAGATCTTGCCGTTCTTAGGAAGCAGGGTTAAGAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGTTCCACAGATCTTGCCGTTCTTAGGAAGCAGGGTTAAGAAAGA  550

seq1  CCTGACAGTTGGTAGTAGATGGTCTCATTCCTCTGATTTGTAGATGTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACAGTTGGTAGTAGATGGTCTCATTCCTCTGATTTGTAGATGTATT  600

seq1  GGCACATTACTGTTATTATTCTTATTTTATAGATAAGGATATGAAGTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATTACTGTTATTATTCTTATTTTATAGATAAGGATATGAAGTAAA  650

seq1  AAAGCAGAATTAATTGACTTCCCCAAAAAGCAACTTGGTAACTTAAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGAATTAATTGACTTCCCCAAAAAGCAACTTGGTAACTTAAAATA  700

seq1  ACCCACATAATTTACCTACTGAGGAGCAAAGAAATCTAGACTGCTGCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACATAATTTACCTACTGAGGAGCAAAGAAATCTAGACTGCTGCTGA  750

seq1  AAAGATGGCTCAGTGTTTAAGAACACTTGTTCTTATAAAGACTAAGATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGGCTCAGTGTTTAAGAACACTTGTTCTTATAAAGACTAAGATTC  800

seq1  AGGTCCCAGCACCCACACAGTGGCTCCCAACCATCCGTAACTCTAGTTCC  850
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GTCCCAGCACCCACACAGTGGCTCCCAACCATCCGTAACTCTAGTTCC  849

seq1  AGGGATTTGACTCCCTTTTCTAGCCTCAGTGGAAACCACGGATGCAGGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTTGACTCCCTTTTCTAGCCTCAGTGGAAACCACGGATGCAGGCA  899

seq1  AAGTACCCATAAATATAAAACAATATTTTAAAAAACTAACCTAATTAAGT  950
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAGTACCCATAAATATAAAACATTATTTTAAAAAACTAACCTAATTAAGT  949

seq1  ATAAAATCATTTAATTCAATCATTTAATCAATGAAGGCAATTGATTATCC  1000
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  ATAAAATCA-TTAATTC-ATCATTTAATCAATGAAGGCAATTGATTATCC  997

seq1  CCAACTTCCAAATCTAAGTTCTTTATTCTTAATAGTGTCATGATTTCCAT  1050
      ||||| ||||| |||||||||||||||||| |||||||||||||||||||
seq2  CCAAC-TCCAATTCTAAGTTCTTTATTCTT-ATAGTGTCATGATTTCCAT  1045

seq1  GACTTTGTCCCAAAAAGATGTGGCTAAGAAGTCAATAATTTAACT-CACA  1099
      |||||||| ||||||  ||||| || || |||| ||| ||  ||| ||||
seq2  GACTTTGTTCCAAAAGAATGTGCCT-AGGAGTC-ATAGTT--ACTCCACA  1091

seq1  TTTGTA-TCATAACAGCTCATCAAATTACTAAATTGACTCAACTCA  1144
       ||||| |||||||||||||||  ||||||||  |||||| |||||
seq2  -TTGTATTCATAACAGCTCATC-TATTACTAA--TGACTCCACTCA  1133


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