BAC Information

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BAC

Clone NameB6Ng01-244P17
Chromosome8 (Build37)
Map Location 111,062,355 - 111,192,950
singlet/doubletdoublet
Overlap genenone
Upstream geneWwp2, Psmd7, LOC100041744, LOC668038
Downstream geneAtbf1, 4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244P17.bB6Ng01-244P17.g
ACCGA053985GA053986
length1,0681,064
definitionB6Ng01-244P17.b B6Ng01-244P17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,191,871 - 111,192,950)(111,062,355 - 111,063,389)
sequence
gaattcttcctgactgcaggcctcccttagtagagttcccttccttgggg
atgctatcttaaggatctcagatacattatacggctaccacctcaccata
ccgatcagccccattacacagcaggatgggctgaggagccctccctcatt
tctgagaactgggttcctggaaagggaatggacagatgaaacagagacag
ggggacagtagattgatgacctcaacatactactcacatcctagaacaat
ctataacccaccggtagctactaaaatatacttcagataaatgaatcagt
atcaaaattgacataaactgaccgatgggtgtgatctccccctcccgccc
tcacactttagcctagattaactgtgcaagaaactggcagaatttgactc
aaagaagtattaggaaatgggagagtgcaaaacaatcctcccatccccac
tgattaagaacacccctcagtttccccaattacagattgggactgatgcc
tagaatcctctaaaacaaggactctggaggtaaaacagctggaaacggct
ggcgcttggcacctgcccattgctctgtatcacgtccccctttggctctt
gtgacctttctcattcccatgtacattccctgcccaccacaacccatctc
tcctggaatcctttccgcttcaagccctgcttgccttcttctccctggcc
aatgagacatgcttctgtgataccgattctctccttccatccgagtgcat
agctggagaaagtcttttaatgtgctcccccttatcagacgtcctcatgg
gattaaccaaatatagcaatgaatggggtcattaaaaaaaaaaatctaag
ccgggtggtggtggcgcacgcctttaatcttagcacttgggaggcagagg
caggcagatttccgagttcgaggccagcctgtctacaagtgagttcagga
cagccagggctataacagaaaacccttgtctcgaaaacaaaagaaaaaca
aaatctacagtgaacttctcaggggctttgaatcagcccttcctgaaagc
tgagaacattgcttctat

gaattccttctcagcgctgatggctttcacccacccacccaccccacccc
acccacccacaaagtgagaggctttctgcctggtctgtttccttacctcc
tttgcagacccagccctgctactctccaaactgcatctgtccagttaaat
gggtgtcctcacttcatgctctcattatcagtacatttggtgcaggaagg
agcatggtggctaaatgacaagtgagggagagctgtgtcctgcatgtgcc
tcttggccatggcaacatgggctcacactcccaaatcacaccccaaaatg
gtgtttggccactcccaggctcctggaagtagaacttcgatctagagaag
ccatctgtctcagcaactagctggtggacacctcctcacaacggtctctg
ctccttccatctctcctctccactacgaatttgcagtttgataatcataa
ttttacaagagaaaggaaggaaggaaggaaggaaggaaggaaggaaggaa
ggaaagaaggaacgaagctatctctctgagctcagtctgctcttcctcct
gtggccctatctcttcccgggctggtgacaaaggggatgtgtcacttgag
atagcctagctgtcaggagtaagacctgtacatgaggattcaatttccag
cagcacttgtcctgagaggagctgtccagtttatcagccgccggcagcac
ctcggcagcagcagcagcaaacatggctttttttttttttttttttaatt
ccctttctggcttctgattagctctggcaatccaattagcagaggcattt
atatcacacaggcttgaggttcccctatacatccttggcagctcaaacca
ctcataaatccccaccgatactaacattcttccctgttgacatggattaa
tttaacaacaccaggccccttccttaaagtaggttctaccagtgcaaagt
taccataagaaatatttagaattcaaagacaggggccaagaaagaatgtc
ctttttgtcctgttatcaagattgccacagccggccttggaagcccatcg
ccatttctctccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_111191871_111192950
seq2: B6Ng01-244P17.b_52_1119 (reverse)

seq1  ATAGGAGCAATGTTCTCAGCTTTCAGGAGGGGCTGATTCAAAGCCCCCTG  50
      |||| ||||||||||||||||||||||| |||||||||||||| ||||||
seq2  ATAGAAGCAATGTTCTCAGCTTTCAGGAAGGGCTGATTCAAAG-CCCCTG  49

seq1  AGAAGTTCCAACCTTGTAGATTTTTGTTTTTCTTTTTGGTTTTTCGAGAC  100
      ||||||||  ||  |||||| |||||||||||||||    ||||||||||
seq2  AGAAGTTC--AC--TGTAGA-TTTTGTTTTTCTTTT---GTTTTCGAGAC  91

seq1  AGGGTTTTTCTGTTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACC  150
      | || |||||||||||||||||||||||||| |||||||| ||||||| |
seq2  AAGGGTTTTCTGTTATAGCCCTGGCTGTCCT-GAACTCAC-TTGTAGA-C  138

seq1  AGGCTGGCCTCGAACTCGGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCCTCGAACTCGGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTA  188

seq1  AGATTAAAGGCGTGCGCCACCACCACCCGGCTTAGATTTTTTTTTTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAAGGCGTGCGCCACCACCACCCGGCTTAGATTTTTTTTTTTAAT  238

seq1  GACCCCATTCATTGCTATATTTGGTTAATCCCATGAGGACGTCTGATAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCATTCATTGCTATATTTGGTTAATCCCATGAGGACGTCTGATAAG  288

seq1  GGGGAGCACATTAAAAGACTTTCTCCAGCTATGCACTCGGATGGAAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGCACATTAAAAGACTTTCTCCAGCTATGCACTCGGATGGAAGGAG  338

seq1  AGAATCGGTATCACAGAAGCATGTCTCATTGGCCAGGGAGAAGAAGGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCGGTATCACAGAAGCATGTCTCATTGGCCAGGGAGAAGAAGGCAA  388

seq1  GCAGGGCTTGAAGCGGAAAGGATTCCAGGAGAGATGGGTTGTGGTGGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCTTGAAGCGGAAAGGATTCCAGGAGAGATGGGTTGTGGTGGGCA  438

seq1  GGGAATGTACATGGGAATGAGAAAGGTCACAAGAGCCAAAGGGGGACGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGTACATGGGAATGAGAAAGGTCACAAGAGCCAAAGGGGGACGTG  488

seq1  ATACAGAGCAATGGGCAGGTGCCAAGCGCCAGCCGTTTCCAGCTGTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGCAATGGGCAGGTGCCAAGCGCCAGCCGTTTCCAGCTGTTTTA  538

seq1  CCTCCAGAGTCCTTGTTTTAGAGGATTCTAGGCATCAGTCCCAATCTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGAGTCCTTGTTTTAGAGGATTCTAGGCATCAGTCCCAATCTGTA  588

seq1  ATTGGGGAAACTGAGGGGTGTTCTTAATCAGTGGGGATGGGAGGATTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGAAACTGAGGGGTGTTCTTAATCAGTGGGGATGGGAGGATTGTT  638

seq1  TTGCACTCTCCCATTTCCTAATACTTCTTTGAGTCAAATTCTGCCAGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTCTCCCATTTCCTAATACTTCTTTGAGTCAAATTCTGCCAGTTT  688

seq1  CTTGCACAGTTAATCTAGGCTAAAGTGTGAGGGCGGGAGGGGGAGATCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCACAGTTAATCTAGGCTAAAGTGTGAGGGCGGGAGGGGGAGATCAC  738

seq1  ACCCATCGGTCAGTTTATGTCAATTTTGATACTGATTCATTTATCTGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATCGGTCAGTTTATGTCAATTTTGATACTGATTCATTTATCTGAAG  788

seq1  TATATTTTAGTAGCTACCGGTGGGTTATAGATTGTTCTAGGATGTGAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTAGTAGCTACCGGTGGGTTATAGATTGTTCTAGGATGTGAGTA  838

seq1  GTATGTTGAGGTCATCAATCTACTGTCCCCCTGTCTCTGTTTCATCTGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTGAGGTCATCAATCTACTGTCCCCCTGTCTCTGTTTCATCTGTC  888

seq1  CATTCCCTTTCCAGGAACCCAGTTCTCAGAAATGAGGGAGGGCTCCTCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCTTTCCAGGAACCCAGTTCTCAGAAATGAGGGAGGGCTCCTCAG  938

seq1  CCCATCCTGCTGTGTAATGGGGCTGATCGGTATGGTGAGGTGGTAGCCGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCTGCTGTGTAATGGGGCTGATCGGTATGGTGAGGTGGTAGCCGT  988

seq1  ATAATGTATCTGAGATCCTTAAGATAGCATCCCCAAGGAAGGGAACTCTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTATCTGAGATCCTTAAGATAGCATCCCCAAGGAAGGGAACTCTA  1038

seq1  CTAAGGGAGGCCTGCAGTCAGGAAGAATTC  1080
      ||||||||||||||||||||||||||||||
seq2  CTAAGGGAGGCCTGCAGTCAGGAAGAATTC  1068


seq1: chr8_111062355_111063389
seq2: B6Ng01-244P17.g_64_1127

seq1  GAATTCCTTCTCAGCGCTGATGGCTTTCACCCACCCACCCACCCCACCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTCAGCGCTGATGGCTTTCACCCACCCACCCACCCCACCCC  50

seq1  ACCCACCCACAAAGTGAGAGGCTTTCTGCCTGGTCTGTTTCCTTACCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCCACAAAGTGAGAGGCTTTCTGCCTGGTCTGTTTCCTTACCTCC  100

seq1  TTTGCAGACCCAGCCCTGCTACTCTCCAAACTGCATCTGTCCAGTTAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGACCCAGCCCTGCTACTCTCCAAACTGCATCTGTCCAGTTAAAT  150

seq1  GGGTGTCCTCACTTCATGCTCTCATTATCAGTACATTTGGTGCAGGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTCCTCACTTCATGCTCTCATTATCAGTACATTTGGTGCAGGAAGG  200

seq1  AGCATGGTGGCTAAATGACAAGTGAGGGAGAGCTGTGTCCTGCATGTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGTGGCTAAATGACAAGTGAGGGAGAGCTGTGTCCTGCATGTGCC  250

seq1  TCTTGGCCATGGCAACATGGGCTCACACTCCCAAATCACACCCCAAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCCATGGCAACATGGGCTCACACTCCCAAATCACACCCCAAAATG  300

seq1  GTGTTTGGCCACTCCCAGGCTCCTGGAAGTAGAACTTCGATCTAGAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGGCCACTCCCAGGCTCCTGGAAGTAGAACTTCGATCTAGAGAAG  350

seq1  CCATCTGTCTCAGCAACTAGCTGGTGGACACCTCCTCACAACGGTCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGTCTCAGCAACTAGCTGGTGGACACCTCCTCACAACGGTCTCTG  400

seq1  CTCCTTCCATCTCTCCTCTCCACTACGAATTTGCAGTTTGATAATCATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCCATCTCTCCTCTCCACTACGAATTTGCAGTTTGATAATCATAA  450

seq1  TTTTACAAGAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAAGAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA  500

seq1  GGAAAGAAGGAACGAAGCTATCTCTCTGAGCTCAGTCTGCTCTTCCTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAAGGAACGAAGCTATCTCTCTGAGCTCAGTCTGCTCTTCCTCCT  550

seq1  GTGGCCCTATCTCTTCCCGGGCTGGTGACAAAGGGGATGTGTCACTTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCCTATCTCTTCCCGGGCTGGTGACAAAGGGGATGTGTCACTTGAG  600

seq1  ATAGCCTAGCTGTCAGGAGTAAGACCTGTACATGAGGATTCAA-TTCCAG  649
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATAGCCTAGCTGTCAGGAGTAAGACCTGTACATGAGGATTCAATTTCCAG  650

seq1  CAGCACTTGTCCTGAGAGGAGCTGTCCAGTTTATCAGCCGCCGGCAGCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTTGTCCTGAGAGGAGCTGTCCAGTTTATCAGCCGCCGGCAGCAC  700

seq1  CTCGGCAGCAGCAGCAGCAAACATGGC-TTTTTTTTTTTTTTTTTTAATT  748
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTCGGCAGCAGCAGCAGCAAACATGGCTTTTTTTTTTTTTTTTTTTAATT  750

seq1  CCCTTTCTGGCTTCTGATTAGCTCTGGCAATCCAATTAGCAGAGGCATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCTGGCTTCTGATTAGCTCTGGCAATCCAATTAGCAGAGGCATTT  800

seq1  ATATCACACAGGC-TGAGGTT-CCCTACACATCC-TGGCAGCTCAAACCA  845
      ||||||||||||| ||||||| ||||| |||||| |||||||||||||||
seq2  ATATCACACAGGCTTGAGGTTCCCCTATACATCCTTGGCAGCTCAAACCA  850

seq1  CTCATAAAT-CCCACCGATACT-ACA-TCTT-CCTG-TGACATGGATTAA  890
      ||||||||| |||||||||||| ||| |||| |||| |||||||||||||
seq2  CTCATAAATCCCCACCGATACTAACATTCTTCCCTGTTGACATGGATTAA  900

seq1  TT--ACAACACCAGGCCC--TCCT--AAGTAGG-TCTACCAGTGC-AAGT  932
      ||  ||||||||||||||  ||||  ||||||| ||||||||||| ||||
seq2  TTTAACAACACCAGGCCCCTTCCTTAAAGTAGGTTCTACCAGTGCAAAGT  950

seq1  --ACATAAG-AATA-TTAGAA-TCAAAGACAGGGGGCCAGAAGAAATGTC  977
         |||||| |||| |||||| ||||||||||||| | ||||  ||||||
seq2  TACCATAAGAAATATTTAGAATTCAAAGACAGGGGCCAAGAAAGAATGTC  1000

seq1  --TTTTGT-CTGTTATCAAGAATGCACCAAGGCTGCCTGGGAAG-CCATC  1023
        |||||| |||||||||||| ||| |  || | |||| ||||| |||||
seq2  CTTTTTGTCCTGTTATCAAGATTGC-CACAGCCGGCCTTGGAAGCCCATC  1049

seq1  GCCAT---TCTCCAT  1035
      |||||   |||||||
seq2  GCCATTTCTCTCCAT  1064


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