BAC Information

Click to search

BAC

Clone NameB6Ng01-245A20
Chromosome8 (Build37)
Map Location 74,222,949 - 74,369,136
singlet/doubletdoublet
Overlap geneB3gnt3, Fcho1, EG665991, LOC665996, LOC385024
Upstream geneJund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, LOC100042289
Downstream geneLOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3, Large
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245A20.bB6Ng01-245A20.g
ACCGA054037GA054038
length1,1501,188
definitionB6Ng01-245A20.b B6Ng01-245A20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,367,971 - 74,369,136)(74,222,949 - 74,224,117)
sequence
gaattcaatttgtgaactaagacccacactagtagctatcatttcagaca
tttctcttgtctgagagtttacataattctggatgcttctcagttgtcag
tcatcactacaggatgccaacaaatttctttccacttctgacagaacttt
acatgcaaaggacttttttgtcaggggtagcatctttcatagctgttgga
agacacccatgttttccagaatgctccatccatcaatgatctgttcacgt
gatctgttttccacagtaatgaatcctttaactctcagtacattatctga
atgacagtgtatctaatagttatctttctacaaagggggcttttgtctta
cacatcagttggacatgaccatagaggtgaaggcccatccactcctgtcc
aggatgctaggttagacacagcttgatagaaaactaaaagttgtatttcg
agctaattctgtgcacattaggattcattacttccacaagagaggacaac
tacattgtcctctttatttgtgctatgtatcaacaaaacattttctaaac
attattaaatagcttactgaatccaaaggtaatgtggaaagtgaagattc
aaaaaatttcaggacttaaagctcttcagagactccttgaaaaatgcata
tgttgacttctttttaattctaaacagttccacagtaaaactgaaagtgt
caactaaattttattgttctttgctcttgttactctcttattattttcct
agaaatgcttgtttggcatagaaacaagcagactgtgatatcaggattca
gtcatgcatgagataagaaggggcagcttgaacattatgaaagctctggt
gggttggttagagttcctgaaatctatttgatggtccacaaacatccact
tgtgtggtaacatcatagtcaatgaaatgtgcacaaagtatcatgagaga
gtactttgctgttccaggggcaaggactgacattgagtcaaatcattaaa
aaaaaaatctgtctgtatcataacaaagtcagaggaggtatcgtgagtgt
gcgtgtgtgcatgcatgctggtctgttatcggtgtgtagtttgttggcta
taattttgtgggcttaatcttcctttccttccacatgaagggaaagtgtt

gaattccaggacagccagggctacacaaagaaaccctgttcccaaaaaaa
acaaagacaaacaaaaaccaaaactcaaaaagcataaaaagccatgggtg
tgtgcccagagacccaatgactaattcctgaatatttgaatagttcctaa
gcccccaagactcacagctgctgtgctatcttgtccaagaagcaaaaaat
aaacagtttgagaactgctcacaaaaccttcttcctgggtgctaggctgg
aaaagggccatgacccatgtcatagacaatattgccctgaaaaacacagt
tcccagacactggctacacaattaattattgaccagttaatattgctgaa
ttcggtcattaattacaacaaactaaccaaatgttaatgagccacagaac
ataagaaaatgttgcttcttctgccgggagtggtggcgcatgcctttaat
cccagcacttgggaggcagaggcaggcggatttctgagtttgagaccagc
ctggtctacagagatagttccaggacagccaaggctacacagagaaactc
tgtctcgaaaaaaaccacacacacacacacacacacacacacacacaaaa
ccacaaaaaaaagaaagaaaagaaaagaaaatgttgcttcttaatgagac
gttgcgtattaattattcactgcatattgatgagccattgcataggaagg
acacattggatactgaagaggcactggctaatcaatgtgtcaaagttgaa
ctggatgcctcatcagtcgacatgcacgcacaggtcgatggccaatgacc
tgactttttggctcacagaccgaggttcatagcgctgctgctgtgactat
taatgaacttcatcggaatattaatgactttagctaaatattaatgagat
tcatcttgatattaatgacccatagaatgctcattacttatgtgtggttc
aaaccactgagtcttaaatgatggggcttggttatttctttatgaattat
ttcatgagtccctggctccctccttgcccttgggtggaaacggttcttgt
gccctttgctcctgacttgggcaagcggcccttcagaagcctactgagta
agagaatgacacctgctccaagagcaatcaaggttgaatcctgacagctc
agacgttcttggattcattcctccagagtgtgagggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_74367971_74369136
seq2: B6Ng01-245A20.b_45_1194 (reverse)

seq1  AACACTTTCCTTACAACTTCTTTTCATGTGGAAGAAAGGGAAGAATTTAG  50
      ||||||||||            |||||||||||| || ||||| ||| ||
seq2  AACACTTTCC-----------CTTCATGTGGAAGGAAAGGAAG-ATTAAG  38

seq1  CCCACAAAA-TATAGCTCAACAAAACTACACACAGAT-ACAGACAAGCAT  98
      ||||||||| |||||| |||| ||||||||||| ||| |||||| |||||
seq2  CCCACAAAATTATAGC-CAAC-AAACTACACACCGATAACAGACCAGCAT  86

seq1  GCATGCACACACGCACACTCACCGATACCTCGTCTGACTTTGTTATGATA  148
      ||||||||||||||||||||| ||||||||| ||||||||||||||||||
seq2  GCATGCACACACGCACACTCA-CGATACCTCCTCTGACTTTGTTATGATA  135

seq1  CAGACAGATTTTTTTTTTTAATGATTTGACTCAATGTCAGTCCTTGCCCC  198
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGA-TTTTTTTTTTAATGATTTGACTCAATGTCAGTCCTTGCCCC  184

seq1  TGGAACAGCAAAGTACTTCTCTCATGATACTTTGTGCACATTTCATTGAC  248
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGGAACAGCAAAGTAC-TCTCTCATGATACTTTGTGCACATTTCATTGAC  233

seq1  TATGATGTTACCACACAAGTGGATGTTTTGTGGACCATCAAATAGATTTC  298
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TATGATGTTACCACACAAGTGGATG-TTTGTGGACCATCAAATAGATTTC  282

seq1  AGGAACTCTAACCAACCCACCAGAGCTTTCATAATGTTCAAGCTGCCCCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTCTAACCAACCCACCAGAGCTTTCATAATGTTCAAGCTGCCCCT  332

seq1  TCTTATCTCATGCATGACTGAATCCTGATATCACAGTCTGCTTGTTTCTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCTCATGCATGACTGAATCCTGATATCACAGTCTGCTTGTTTCTA  382

seq1  TGCCAAACAAGCATTTCTAGGAAAATAATAAGAGAGTAACAAGAGCAAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAACAAGCATTTCTAGGAAAATAATAAGAGAGTAACAAGAGCAAAG  432

seq1  AACAATAAAATTTAGTTGACACTTTCAGTTTTACTGTGGAACTGTTTAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAAAATTTAGTTGACACTTTCAGTTTTACTGTGGAACTGTTTAGA  482

seq1  ATTAAAAAGAAGTCAACATATGCATTTTTCAAGGAGTCTCTGAAGAGCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAGAAGTCAACATATGCATTTTTCAAGGAGTCTCTGAAGAGCTT  532

seq1  TAAGTCCTGAAATTTTTTGAATCTTCACTTTCCACATTACCTTTGGATTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCCTGAAATTTTTTGAATCTTCACTTTCCACATTACCTTTGGATTC  582

seq1  AGTAAGCTATTTAATAATGTTTAGAAAATGTTTTGTTGATACATAGCACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGCTATTTAATAATGTTTAGAAAATGTTTTGTTGATACATAGCACA  632

seq1  AATAAAGAGGACAATGTAGTTGTCCTCTCTTGTGGAAGTAATGAATCCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGAGGACAATGTAGTTGTCCTCTCTTGTGGAAGTAATGAATCCTA  682

seq1  ATGTGCACAGAATTAGCTCGAAATACAACTTTTAGTTTTCTATCAAGCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCACAGAATTAGCTCGAAATACAACTTTTAGTTTTCTATCAAGCTG  732

seq1  TGTCTAACCTAGCATCCTGGACAGGAGTGGATGGGCCTTCACCTCTATGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAACCTAGCATCCTGGACAGGAGTGGATGGGCCTTCACCTCTATGG  782

seq1  TCATGTCCAACTGATGTGTAAGACAAAAGCCCCCTTTGTAGAAAGATAAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCCAACTGATGTGTAAGACAAAAGCCCCCTTTGTAGAAAGATAAC  832

seq1  TATTAGATACACTGTCATTCAGATAATGTACTGAGAGTTAAAGGATTCAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGATACACTGTCATTCAGATAATGTACTGAGAGTTAAAGGATTCAT  882

seq1  TACTGTGGAAAACAGATCACGTGAACAGATCATTGATGGATGGAGCATTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGGAAAACAGATCACGTGAACAGATCATTGATGGATGGAGCATTC  932

seq1  TGGAAAACATGGGTGTCTTCCAACAGCTATGAAAGATGCTACCCCTGACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAACATGGGTGTCTTCCAACAGCTATGAAAGATGCTACCCCTGACA  982

seq1  AAAAAGTCCTTTGCATGTAAAGTTCTGTCAGAAGTGGAAAGAAATTTGTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTCCTTTGCATGTAAAGTTCTGTCAGAAGTGGAAAGAAATTTGTT  1032

seq1  GGCATCCTGTAGTGATGACTGACAACTGAGAAGCATCCAGAATTATGTAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCCTGTAGTGATGACTGACAACTGAGAAGCATCCAGAATTATGTAA  1082

seq1  ACTCTCAGACAAGAGAAATGTCTGAAATGATAGCTACTAGTGTGGGTCTT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAGACAAGAGAAATGTCTGAAATGATAGCTACTAGTGTGGGTCTT  1132

seq1  AGTTCACAAATTGAATTC  1166
      ||||||||||||||||||
seq2  AGTTCACAAATTGAATTC  1150

seq1: chr8_74222949_74224117
seq2: B6Ng01-245A20.g_69_1256

seq1  GAATTCCAGGACAGCCAGGGCTACACAAAGAAACCCTGTTCCCAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTACACAAAGAAACCCTGTTCCCAAAAAAA  50

seq1  ACAAAGACAAACAAAAACCAAAACTCAAAAAGCATAAAAAGCCATGGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGACAAACAAAAACCAAAACTCAAAAAGCATAAAAAGCCATGGGTG  100

seq1  TGTGCCCAGAGACCCAATGACTAATTCCTGAATATTTGAATAGTTCCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCAGAGACCCAATGACTAATTCCTGAATATTTGAATAGTTCCTAA  150

seq1  GCCCCCAAGACTCACAGCTGCTGTGCTATCTTGTCCAAGAAGCAAAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCAAGACTCACAGCTGCTGTGCTATCTTGTCCAAGAAGCAAAAAAT  200

seq1  AAACAGTTTGAGAACTGCTCACAAAACCTTCTTCCTGGGTGCTAGGCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTTTGAGAACTGCTCACAAAACCTTCTTCCTGGGTGCTAGGCTGG  250

seq1  AAAAGGGCCATGACCCATGTCATAGACAATATTGCCCTGAAAAACACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGCCATGACCCATGTCATAGACAATATTGCCCTGAAAAACACAGT  300

seq1  TCCCAGACACTGGCTACACAATTAATTATTGACCAGTTAATATTGCTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGACACTGGCTACACAATTAATTATTGACCAGTTAATATTGCTGAA  350

seq1  TTCGGTCATTAATTACAACAAACTAACCAAATGTTAATGAGCCACAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGTCATTAATTACAACAAACTAACCAAATGTTAATGAGCCACAGAAC  400

seq1  ATAAGAAAATGTTGCTTCTTCTGCCGGGAGTGGTGGCGCATGCCTTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAAATGTTGCTTCTTCTGCCGGGAGTGGTGGCGCATGCCTTTAAT  450

seq1  CCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGACCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGACCAGC  500

seq1  CTGGTCTACAGAGATAGTTCCAGGACAGCCAAGGCTACACAGAGAAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTACAGAGATAGTTCCAGGACAGCCAAGGCTACACAGAGAAACTC  550

seq1  TGTCTCGAAAAAAACCACACACACACACACACACACACACACACACAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCGAAAAAAACCACACACACACACACACACACACACACACACAAAA  600

seq1  CCACAAAAAAAAGAAAGAAAAGAAAAGAAAATGTTGCTTCTTAATGAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAAAAAAGAAAGAAAAGAAAAGAAAATGTTGCTTCTTAATGAGAC  650

seq1  GTTGCGTATTAATTATTCACTGCATATTGATGAGCCATTGCATAGGAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCGTATTAATTATTCACTGCATATTGATGAGCCATTGCATAGGAAGG  700

seq1  ACACATTGGATACTGAAGAGGCACTGGCTAATCAATGTGTCAAAGTTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTGGATACTGAAGAGGCACTGGCTAATCAATGTGTCAAAGTTGAA  750

seq1  CTGGATGCCTCATCAGTCGACATGCACGCACAGGTCGATGGCCAATGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGCCTCATCAGTCGACATGCACGCACAGGTCGATGGCCAATGACC  800

seq1  TGAC-TTTTGGCTCACAGACCGAGGTTCATAGCGCTGCTGCTGTGACTAT  849
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTTTGGCTCACAGACCGAGGTTCATAGCGCTGCTGCTGTGACTAT  850

seq1  TAATGAACTTCATCGGAATATTAATGACTTTAGCTAAATATTAATGAGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAACTTCATCGGAATATTAATGACTTTAGCTAAATATTAATGAGAT  900

seq1  TCATCTTGATATTAATGACCCATAGAATGCTCATTAC-TATGTGTGGTTC  948
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCATCTTGATATTAATGACCCATAGAATGCTCATTACTTATGTGTGGTTC  950

seq1  AAA-CACTGAGTCTT-AATGAT-GGGCTTGGTTATTTCTTTATGAAT--A  993
      ||| ||||||||||| |||||| ||||||||||||||||||||||||   
seq2  AAACCACTGAGTCTTAAATGATGGGGCTTGGTTATTTCTTTATGAATTAT  1000

seq1  TTCATGAG-CCCTGGCTCC--CCCTGCCC-TGGGTGGAAACGG-TCTTGT  1038
      |||||||| ||||||||||  || ||||| ||||||||||||| ||||||
seq2  TTCATGAGTCCCTGGCTCCCTCCTTGCCCTTGGGTGGAAACGGTTCTTGT  1050

seq1  GCCCTTGGC-CCTGACTTGG--CAGCGG-CCTTCAGAAGGCTACTGAGGT  1084
      |||||| || ||||||||||   ||||| |||||||||| ||||||||  
seq2  GCCCTTTGCTCCTGACTTGGGCAAGCGGCCCTTCAGAAGCCTACTGAGTA  1100

seq1  AGAGGAATGACACGTGCTCAAAGAGGCATC-AGGGTGGATACTGACACGC  1133
      ||| ||||||||| ||||| |||||  ||| ||| || || |||||| ||
seq2  AGA-GAATGACACCTGCTCCAAGAGCAATCAAGGTTGAATCCTGACA-GC  1148

seq1  TCAGACGTTC-TGGA-TCATTCTCCCAGA--GTGAGGGAT  1169
      |||||||||| |||| ||||||  |||||  |||||||||
seq2  TCAGACGTTCTTGGATTCATTCCTCCAGAGTGTGAGGGAT  1188