BAC Information

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BAC

Clone NameB6Ng01-245M01
ChromosomeX (Build37)8 (Build37)
Map Location 79,244,131 - 79,245,280110,094,317 - 110,094,391
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTmem47, LOC100041462, LOC100041474, 4930595M18Rik, EG667799
Downstream geneEG629310, Dmd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245M01.bB6Ng01-245M01.g
ACCGA054556GA054557
length1,152693
definitionB6Ng01-245M01.b B6Ng01-245M01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,244,131 - 79,245,280)(110,094,317 - 110,094,391)
sequence
gaattctcaacaggatcaaatgcctcccttcccactgatgccagatgagg
cagtcctctgctacatatgtagcaggagccacgaactggcccatgtatac
tctttggttggcatttttgtctctcagagctctgaggtgtctggagctga
tactggaccaggaaaggggataacatttgaaatgtaaacaaacaaaataa
ttaataaataaaaataatgaaaaaagattgtgaattctgaaagcaccttg
aaacagtaagttaatcagtggcaaacatttttgtaacttatttagaagag
aattgtacttaaactgtatttttctatatgaaataaaaaaatcatatagt
tcaatgtataaaaatactcaagatatattaagcaatagatagttcacaaa
ctagcatcattcaactgacctataagcatcaaaagaggtcaaatgccttt
agtcattggggaaataaatatttaaaacatttctcctgtgtttaaatttt
ttcaaggttttttttttattttttattttttttagtttaagtgtcctgat
agctgttagacagtttgcatgctgcccagtaaaattgccatccaattatg
actgtaagccaaagtctaaaattttactaaaatttcatcaagtgcaagtc
ccacaactcataatgtaattctgataagccaggtatggttgaatcaaaca
ctgtattacacttattgtagatatgcatatttctctatctctaatctcat
aaaactgaagaatcaaattatgttaacccacaatctgagatggagagtaa
ttgtgtgagcaatgtagattatatgagttatctttgatcataaaaataga
ctttgaaaaaaatcagttacaaaacctcattgactagttttagcagatac
ttcagcatctaaagttagtctatatttttagagacaattgttatacaaca
aagacataaaagtgtaaaagtataaattttattagtaataaattaacaat
ctgaatgaatttttcagaaatgttatgaaaatatagatgagagtatctat
gtttttactaatgggttaataggtatattcacttaacctaacagctgctc
cttggcttatcttcctttaggaatatttactaggaagctaagttcagtat
gt

gaattctttgtttagctctgtaccacacaatctgttggttgctgttttaa
actattggcagtgtcctttgagttacagaaagattgaaattttatgaggt
cccttttgttgattcttgatcttagagcataagtcattggtattctgttc
ataaaaattcccctgtgcccaggtgttctgggattttctctactttctcc
tctattagttttagggaatctggttttatgaggagtttcttggtccactt
gggcttgagctttgtacaggagataagaatggatcaatttgcattcttct
acattcttacctacaattgaaccagcaccatttgttgaaaatgctgtctt
ttttccactggatggttttagctcctttgtcaaagatcaagtgaccatag
gtatgtgggtccatttccgagtcgtcaattctattccattgatctttcca
actgtctctgtaccaataacacagttttatcactattcctctgtagtaga
gctaaaggtcagggatggcgattcccccagaagtttttttgttgttgttg
ttgtttttattattattattatttttgttttttaaattgagaatagtttt
tcactgtcctgcgttttttgttattaaaatgaatttgcaaataattcttt
ctaactctgtgaagatttgagttggaatttttgatggggattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_79244131_79245280
seq2: B6Ng01-245M01.b_48_1199 (reverse)

seq1  ACATACTGAATTTACTCTCCTAAATAAATATT-CTAAA-GAAGATAA-CC  47
      |||||||||| |||   |||| | |||||||| ||||| |||||||| ||
seq2  ACATACTGAACTTAGCTTCCT-AGTAAATATTCCTAAAGGAAGATAAGCC  49

seq1  AA-GAGCAGCTGGTTAGGGTAAAGTG-ATATACTTATTAAACCATTTAGT  95
      || |||||||| |||| ||| ||||| |||||| |||||| ||| |||||
seq2  AAGGAGCAGCT-GTTA-GGTTAAGTGAATATACCTATTAACCCA-TTAGT  96

seq1  -AAAACATAGATACTTCTCATCTATATTTTCATAACATTTCTTGAAATAT  144
       ||||||||||||| |||||||||||||||||||||||||| ||||| ||
seq2  AAAAACATAGATAC-TCTCATCTATATTTTCATAACATTTC-TGAAAAAT  144

seq1  TCATTCAGATTG-TAATTTATTACTAATAAATTTAATACTTTTACACTTT  193
      |||||||||||| |||||||||||||||||| || |||||||||||||||
seq2  TCATTCAGATTGTTAATTTATTACTAATAAAATTTATACTTTTACACTTT  194

seq1  TATGTCTTTGTTGTATAAC-ATTGTCTCTAAAAATATAGACTAACTTTAG  242
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TATGTCTTTGTTGTATAACAATTGTCTCTAAAAATATAGACTAACTTTAG  244

seq1  ATGCTGAAGTATCTGCTAAAACTAGTCAATGAGGTTTTGTAACTGATTTT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAAGTATCTGCTAAAACTAGTCAATGAGGTTTTGTAACTGATTTT  294

seq1  TTTCAAAGTCTATTTTTATGATCAAAGATAACTCATATAATCTACATTGC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGTCTATTTTTATGATCAAAGATAACTCATATAATCTACATTGC  344

seq1  TCACACAATTACTCTCCATCTCAGATTGTGGGTTAACATAATTTGATTCT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAATTACTCTCCATCTCAGATTGTGGGTTAACATAATTTGATTCT  394

seq1  TCAGTTTTATGAGATTAGAGATAGAGAAATATGCATATCTACAATAAGTG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTTATGAGATTAGAGATAGAGAAATATGCATATCTACAATAAGTG  444

seq1  TAATACAGTGTTTGATTCAACCATACCTGGCTTATCAGAATTACATTATG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACAGTGTTTGATTCAACCATACCTGGCTTATCAGAATTACATTATG  494

seq1  AGTTGTGGGACTTGCACTTGATGAAATTTTAGTAAAATTTTAGACTTTGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGGGACTTGCACTTGATGAAATTTTAGTAAAATTTTAGACTTTGG  544

seq1  CTTACAGTCATAATTGGATGGCAATTTTACTGGGCAGCATGCAAACTGTC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGTCATAATTGGATGGCAATTTTACTGGGCAGCATGCAAACTGTC  594

seq1  TAACAGCTATCAGGACACTTAAACTAAAAAAAATAAAAAATAAAAAAAAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCTATCAGGACACTTAAACTAAAAAAAATAAAAAATAAAAAAAAA  644

seq1  ACCTTGAAAAAATTTAAACACAGGAGAAATGTTTTAAATATTTATTTCCC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGAAAAAATTTAAACACAGGAGAAATGTTTTAAATATTTATTTCCC  694

seq1  CAATGACTAAAGGCATTTGACCTCTTTTGATGCTTATAGGTCAGTTGAAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACTAAAGGCATTTGACCTCTTTTGATGCTTATAGGTCAGTTGAAT  744

seq1  GATGCTAGTTTGTGAACTATCTATTGCTTAATATATCTTGAGTATTTTTA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTAGTTTGTGAACTATCTATTGCTTAATATATCTTGAGTATTTTTA  794

seq1  TACATTGAACTATATGATTTTTTTATTTCATATAGAAAAATACAGTTTAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGAACTATATGATTTTTTTATTTCATATAGAAAAATACAGTTTAA  844

seq1  GTACAATTCTCTTCTAAATAAGTTACAAAAATGTTTGCCACTGATTAACT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAATTCTCTTCTAAATAAGTTACAAAAATGTTTGCCACTGATTAACT  894

seq1  TACTGTTTCAAGGTGCTTTCAGAATTCACAATCTTTTTTCATTATTTTTA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTTCAAGGTGCTTTCAGAATTCACAATCTTTTTTCATTATTTTTA  944

seq1  TTTATTAATTATTTTGTTTGTTTACATTTCAAATGTTATCCCCTTTCCTG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAATTATTTTGTTTGTTTACATTTCAAATGTTATCCCCTTTCCTG  994

seq1  GTCCAGTATCAGCTCCAGACACCTCAGAGCTCTGAGAGACAAAAATGCCA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTATCAGCTCCAGACACCTCAGAGCTCTGAGAGACAAAAATGCCA  1044

seq1  ACCAAAGAGTATACATGGGCCAGTTCGTGGCTCCTGCTACATATGTAGCA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGAGTATACATGGGCCAGTTCGTGGCTCCTGCTACATATGTAGCA  1094

seq1  GAGGACTGCCTCATCTGGCATCAGTGGGAAGGGAGGCATTTGATCCTGTT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTGCCTCATCTGGCATCAGTGGGAAGGGAGGCATTTGATCCTGTT  1144

seq1  GAGAATTC  1150
      ||||||||
seq2  GAGAATTC  1152


seq1: chr8_110094317_110094391
seq2: B6Ng01-245M01.g_712_758 (reverse)

seq1  CAATCCCCATCAAAATTCCAACTTGGGGTGGGGGGGGGGGAAGATTCCAA  50
      |||||||||||||||                            |||||||
seq2  CAATCCCCATCAAAA----------------------------ATTCCAA  22

seq1  CTCAACTCTTCATAGAGTTAGAAAG  75
      ||||| |||||| ||||||||||||
seq2  CTCAAATCTTCACAGAGTTAGAAAG  47


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