BAC Information

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BAC

Clone NameB6Ng01-246G19
Chromosome8 (Build37)
Map Location 60,346,039 - 60,489,839
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC654355, LOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
Downstream gene4930431L04Rik, BC030500
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246G19.bB6Ng01-246G19.g
ACCGA055042GA055043
length1,0541,097
definitionB6Ng01-246G19.b B6Ng01-246G19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,346,039 - 60,347,078)(60,488,749 - 60,489,839)
sequence
gaattcattgttagggaagcagtggaatcttgaggtttatttttctgtat
tattatcaccatgattctttaaaaccatcacatgctatggtggtttgaat
aggcatggctctcatagactcatgtgcccatggagagtgtcattattagg
agacgtggccttgctggaggaagtgtgtcactgtgaaggtgggctttgag
gtctcatacataggctcaagccatgcccagtgttaagacgatgtcctctg
ctggcattggataaagacgtatgactcttagcttctggtccagcaccatg
tctgcttgcatgctgccatgttcctcaccatgatgacaatggactaagcc
tctgacactgtaagccagcacatattaaatgttttcctttagcagaattg
ctgtggtcaacatttctcgtcacagcaataaaaccctaacgaacacagat
gccttctttataaccttccaatgtgtttcaattgcttctagaataacaac
acaactttttgtttatttgtctctaatgacaatgtccttctccctggcca
ggatcattttttaactcatcagagatttgctgcccaatgagaattctgct
ctctttctctgttgtttgcttttcacattgtttgcctggttatttatttt
ccaggcttagcttacatgtcataactaagcccctgtatttgcttaagact
cctattttatattctcaatttgtcacatattccctcttctctttaatctg
ttgcaatatttgtccttttgaccaaggtttttttattttctaccatcaac
aacagtctaaaaatatctaactatccagtagagatacagatatatagcta
tagatagacgataaaacattcacacctcttacactataaagattaataaa
taagattacactgcagtagttattattgtttgcaattctcttactatgtc
taaaatttataaactaaatcttatcagaataacattcttcatgaagagaa
aaacaaaagttatgcaaggaatctgtgttttctgtgttttcaaggcatct
gctg

gaattcctcacatctctctggagttcccaatattcagtagagtcaaagaa
gcctgtgaaaatgaggagacaaagtaacccaaatcattcccccatatata
gtagccaacataaacaatcagtaaactaaagtggtggaaagaataagaaa
agaagattcaatagagatacagaccaaaaataaataggagaagggacctg
tgcctaggcttcatgttgattgtgaccaggagtggccaagttagagcaaa
tgtaagcctgttggaaaaatgagttggttataggtagaaaagttagagta
agcaccattatagaatgatcttgtcacttttgtctgtcttcataaacatg
tgccttttagaaaggaagaactaaacagcacaggttagctggactgtcca
tatacctcttgttaattttgatcaattactctacaaagctctctcccaaa
ttaaagaaagctttgtgataaggactgataagtactgtgctatattttaa
tttcactccagcaagaggacatttactataaaataccattaagaaccaag
ctataattaaatatgattgttgttctatgcaacctccaagacaagaatcc
aaaatattatagagcatgcattatttataagataataaagaaaatattct
ttctattaaagaattatttgatatctatatgtttttccaaatttcctttt
tctctgaaatcactttgggatcttctacatggtttaggtaccctacataa
aatacaatgaaatggcttaagtgcatgtgtgtggttcccagagactgcaa
gatatagaaagataaatattcactgctttttctctatttttctgatttta
aatctcttctgttgtaacttatgtattttaaaacctattcaccataatga
agaataagaagaaaatttccctcattttggaaatcttctttttaatagcc
tagaaaagctttacgtgtgccctacatattagcaatgcttcagcagctgc
agagatttcacagaaaattcaaggaactgaacagaattcaaatattccag
tctttggaggctttagctaagcaacataaatgttcttccactaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_60346039_60347078
seq2: B6Ng01-246G19.b_45_1098

seq1  GAATTCATTGTTAGGGAAGCAGTGGAATCTTGAGGTTTATTTTTCTGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTTAGGGAAGCAGTGGAATCTTGAGGTTTATTTTTCTGTAT  50

seq1  TATTATCACCATGATTCTTTAAAACCATCACATGCTATGGTGGTTTGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCACCATGATTCTTTAAAACCATCACATGCTATGGTGGTTTGAAT  100

seq1  AGGCATGGCTCTCATAGACTCATGTGCCCATGGAGAGTGTCATTATTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGGCTCTCATAGACTCATGTGCCCATGGAGAGTGTCATTATTAGG  150

seq1  AGACGTGGCCTTGCTGGAGGAAGTGTGTCACTGTGAAGGTGGGCTTTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGTGGCCTTGCTGGAGGAAGTGTGTCACTGTGAAGGTGGGCTTTGAG  200

seq1  GTCTCATACATAGGCTCAAGCCATGCCCAGTGTTAAGACGATGTCCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATACATAGGCTCAAGCCATGCCCAGTGTTAAGACGATGTCCTCTG  250

seq1  CTGGCATTGGATAAAGACGTATGACTCTTAGCTTCTGGTCCAGCACCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATTGGATAAAGACGTATGACTCTTAGCTTCTGGTCCAGCACCATG  300

seq1  TCTGCTTGCATGCTGCCATGTTCCTCACCATGATGACAATGGACTAAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTGCATGCTGCCATGTTCCTCACCATGATGACAATGGACTAAGCC  350

seq1  TCTGACACTGTAAGCCAGCACATATTAAATGTTTTCCTTTAGCAGAATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACACTGTAAGCCAGCACATATTAAATGTTTTCCTTTAGCAGAATTG  400

seq1  CTGTGGTCAACATTTCTCGTCACAGCAATAAAACCCTAACGAACACAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTCAACATTTCTCGTCACAGCAATAAAACCCTAACGAACACAGAT  450

seq1  GCCTTCTTTATAACCTTCCAATGTGTTTCAATTGCTTCTAGAATAACAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTTTATAACCTTCCAATGTGTTTCAATTGCTTCTAGAATAACAAC  500

seq1  ACAACTTTTTGTTTATTTGTCTCTAATGACAATGTCCTTCTCCCTGGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTTTTGTTTATTTGTCTCTAATGACAATGTCCTTCTCCCTGGCCA  550

seq1  GGATCATTTTTTAACTCATCAGAGATTTGCTGCCCAATGAGAATTCTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATTTTTTAACTCATCAGAGATTTGCTGCCCAATGAGAATTCTGCT  600

seq1  CTCTTTCTCTGTTGTTTGCTTTTCACATTGTTTGCCTGGTTATTTATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTCTGTTGTTTGCTTTTCACATTGTTTGCCTGGTTATTTATTTT  650

seq1  CCAGGCTTAGCTTACATGTCATAACTAAGCCCCTGTATTTGCTTAAGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTTAGCTTACATGTCATAACTAAGCCCCTGTATTTGCTTAAGACT  700

seq1  CCTATTTTATATTCTCAATTTGTCACATATTCCCTCTTCTCTTTAATCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTTATATTCTCAATTTGTCACATATTCCCTCTTCTCTTTAATCTG  750

seq1  TTGCAATATTTGTCC-TTTGACCAAGG-TTTTTTATTTTCTACCATCAAC  798
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  TTGCAATATTTGTCCTTTTGACCAAGGTTTTTTTATTTTCTACCATCAAC  800

seq1  AACAGTCTAAAAATATCTAACTATCCAGTAGAGATACAGATATATAGCTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCTAAAAATATCTAACTATCCAGTAGAGATACAGATATATAGCTA  850

seq1  TAGATAGACGATAAAACATTCACACCTCTTACACTAT-AAGATT-ATAAA  896
      ||||||||||||||||||||||||||||||||||||| |||||| |||||
seq2  TAGATAGACGATAAAACATTCACACCTCTTACACTATAAAGATTAATAAA  900

seq1  TAAGATTACACTGCAGTAGTTATTATTG-TTGCAATTCTCTTACTATGTC  945
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAAGATTACACTGCAGTAGTTATTATTGTTTGCAATTCTCTTACTATGTC  950

seq1  T-AAATTTATAAACTAAATCTTATCAGA--TACA-TCTTCATG-AGAGAA  990
      | ||||||||||||||||||||||||||   ||| |||||||| ||||||
seq2  TAAAATTTATAAACTAAATCTTATCAGAATAACATTCTTCATGAAGAGAA  1000

seq1  AA--CATAGTTATGC-AGGGATCTGTGTTTTCTGTGTTTTC-AGGCATCT  1036
      ||   | |||||||| ||| ||||||||||||||||||||| ||||||||
seq2  AAACAAAAGTTATGCAAGGAATCTGTGTTTTCTGTGTTTTCAAGGCATCT  1050

seq1  GCTG  1040
      ||||
seq2  GCTG  1054


seq1: chr8_60488749_60489839
seq2: B6Ng01-246G19.g_68_1164 (reverse)

seq1  CCATTAGTGGAAGAACATTTATGTTGCTTAGCTAAAGCCCTTCAAAGACT  50
      ||||||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  CCATTAGTGGAAGAACATTTATGTTGCTTAGCTAAAG-CCTCCAAAGACT  49

seq1  GG-ATATTTGAA-TCTG-TCAGTTTCCTGAATTTTCCTGTGAAATCTCTG  97
      || ||||||||| |||| |||||| | |||||||| ||||||||||||||
seq2  GGAATATTTGAATTCTGTTCAGTTCCTTGAATTTT-CTGTGAAATCTCTG  98

seq1  CAGCTGCTG-AGCATTGCTAATATGTA-GGCACACGT-AAGCTTTTCTAG  144
      ||||||||| ||||||||||||||||| ||||||||| ||||||||||||
seq2  CAGCTGCTGAAGCATTGCTAATATGTAGGGCACACGTAAAGCTTTTCTAG  148

seq1  GCTATTAAAAAG-AGATTTCCAAAATGA-GGATATTTTCTTCTTATTCTT  192
      |||||||||||| ||||||||||||||| ||| |||||||||||||||||
seq2  GCTATTAAAAAGAAGATTTCCAAAATGAGGGAAATTTTCTTCTTATTCTT  198

seq1  CATTATGGTGAATAGGTTTTAAAATACATAAGTTACAACAGAAGAGATTT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATGGTGAATAGGTTTTAAAATACATAAGTTACAACAGAAGAGATTT  248

seq1  AAAATCAGAAAAATAGAGAAAAAGCAGTGAATATTTATCTTTCTATATCT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAGAAAAATAGAGAAAAAGCAGTGAATATTTATCTTTCTATATCT  298

seq1  TGCAGTCTCTGGGAACCACACACATGCACTTAAGCCATTTCATTGTATTT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCTCTGGGAACCACACACATGCACTTAAGCCATTTCATTGTATTT  348

seq1  TATGTAGGGTACCTAAACCATGTAGAAGATCCCAAAGTGATTTCAGAGAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGGGTACCTAAACCATGTAGAAGATCCCAAAGTGATTTCAGAGAA  398

seq1  AAAGGAAATTTGGAAAAACATATAGATATCAAATAATTCTTTAATAGAAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAATTTGGAAAAACATATAGATATCAAATAATTCTTTAATAGAAA  448

seq1  GAATATTTTCTTTATTATCTTATAAATAATGCATGCTCTATAATATTTTG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTTTCTTTATTATCTTATAAATAATGCATGCTCTATAATATTTTG  498

seq1  GATTCTTGTCTTGGAGGTTGCATAGAACAACAATCATATTTAATTATAGC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTGTCTTGGAGGTTGCATAGAACAACAATCATATTTAATTATAGC  548

seq1  TTGGTTCTTAATGGTATTTTATAGTAAATGTCCTCTTGCTGGAGTGAAAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCTTAATGGTATTTTATAGTAAATGTCCTCTTGCTGGAGTGAAAT  598

seq1  TAAAATATAGCACAGTACTTATCAGTCCTTATCACAAAGCTTTCTTTAAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATAGCACAGTACTTATCAGTCCTTATCACAAAGCTTTCTTTAAT  648

seq1  TTGGGAGAGAGCTTTGTAGAGTAATTGATCAAAATTAACAAGAGGTATAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGAGAGCTTTGTAGAGTAATTGATCAAAATTAACAAGAGGTATAT  698

seq1  GGACAGTCCAGCTAACCTGTGCTGTTTAGTTCTTCCTTTCTAAAAGGCAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTCCAGCTAACCTGTGCTGTTTAGTTCTTCCTTTCTAAAAGGCAC  748

seq1  ATGTTTATGAAGACAGACAAAAGTGACAAGATCATTCTATAATGGTGCTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATGAAGACAGACAAAAGTGACAAGATCATTCTATAATGGTGCTT  798

seq1  ACTCTAACTTTTCTACCTATAACCAACTCATTTTTCCAACAGGCTTACAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAACTTTTCTACCTATAACCAACTCATTTTTCCAACAGGCTTACAT  848

seq1  TTGCTCTAACTTGGCCACTCCTGGTCACAATCAACATGAAGCCTAGGCAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTAACTTGGCCACTCCTGGTCACAATCAACATGAAGCCTAGGCAC  898

seq1  AGGTCCCTTCTCCTATTTATTTTTGGTCTGTATCTCTATTGAATCTTCTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCCTTCTCCTATTTATTTTTGGTCTGTATCTCTATTGAATCTTCTT  948

seq1  TTCTTATTCTTTCCACCACTTTAGTTTACTGATTGTTTATGTTGGCTACT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTCTTTCCACCACTTTAGTTTACTGATTGTTTATGTTGGCTACT  998

seq1  ATATATGGGGGAATGATTTGGGTTACTTTGTCTCCTCATTTTCACAGGCT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGGGGGAATGATTTGGGTTACTTTGTCTCCTCATTTTCACAGGCT  1048

seq1  TCTTTGACTCTACTGAATATTGGGAACTCCAGAGAGATGTGAGGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGACTCTACTGAATATTGGGAACTCCAGAGAGATGTGAGGAATTC  1097


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