BAC Information

Click to search

BAC

Clone NameB6Ng01-246M18
Chromosome8 (Build37)
Map Location 113,833,952 - 113,998,037
singlet/doubletdoublet
Overlap geneLOC547023, Mlkl, Fa2h, Wdr59
Upstream geneHydin, LOC672398, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3
Downstream geneZnrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246M18.bB6Ng01-246M18.g
ACCGA055311GA055312
length1,1581,068
definitionB6Ng01-246M18.b B6Ng01-246M18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,996,888 - 113,998,037)(113,833,952 - 113,835,019)
sequence
gaattcacaggcacccaagtcaagaatggcatagaataattgtggaggta
aattgtgggcacttgcttatatttaaccactttcgatctaaaggtttcat
gtggttcaatgtatttacgatgtccaaaacagatgtcagttgttttgtgg
ttaatttgcaaccaccgcacctctccctgaggcttcctcatgcagtaatg
cagtagtctctttaagctgagcaggctgacggagtggagcagtgggagcc
ccatgctctcctgtgtgtggcctcgccctcgctgtggaggccgatgagtc
cgtcctgaggactgttttctcctcaggaggcctgcatccgtattaccgac
cacttttgctctggaagtatttccagctaactgaaattttctgtgtccac
atttttcttgtgtgcacttgacctctgcccctgagagtattcggagaggg
aggcagaaggaccgagatgggcctgcattaaggcctagcaaggagcaagt
gcactgggctccccaggtctcgtgcagcctcctgcagaccatggtttatt
tctcttgtgtttttaatctgcctgacttaggttgaatttgcattcaccca
gtgttctctagatgaaattatgtttgctactaagaacttaagtgtaagtg
acctaaagacctgtcaaatctcatatagatcagaaagcacagcacagatt
aggccaaagaaatattgtttattctggatcttctaataaatattgagcat
tgacctataggcattttccaaattttgcagcctctcatctctgcttcagt
ttccattactaaaatagctctgatgtaaataactgaagaggcctttaagt
taatggagtaggatctgatctccacaaacagtatggtatactgctttatc
tgatgctggagtactagggagtgccctctcagcttagctcctgggtcccc
tggccattgttcaggataggttttgcagtcctggtactaagacattcagt
tcaccgagctgctccccagccgcactgggacagagccctaggaggaacaa
gattgtgctctgcttgtgtttcttcaacctggtgaggcgacggtaacttc
tttgccttgtttctccacattgccagcaggaccttagtcttgcccagagt
tccctcat
gaattccttccttatcctggatcttggcctttacattttctatagtgtcc
gagggttcaacctcgagcgtgatggtccccccccccccccacaagggtct
tcacaaaaatctgcatcgtggcggcggctccacccacgatggcggatcgg
aaaggaagatccgagcgtggccgacggggtctcctggccgaaggacccgg
ccttcacttggaatctttctgcttctacctatttcccactaagtggattg
tcaagtatcaaacacagggctttgtacaagtactcttccaactatatcac
tggtctctggatcacagcagtttagagatttctgggacctgatgtacaag
tcagacatggccatgagcgtattaccagcaagttttgtacttagttccct
gggcaaagagaaggactacagtatttttactattacaactgttatttaac
tcagtggcttaaaacaggaatatatttactaagttcacgtttctgtgaat
tggcagtggagtcattttttttggtcttacgggggatcattcatgcacct
ggatcaattgtcagcctggctggtctagcgtgaactcagatgagaccgaa
cgcctctgctctgtgtagttcttcatcttcccgcacgcctacagaccttg
ctcatggatggatacttttttgagagacggagagaacattttaaagcctc
tggaaacctagacttggaagtagtccactgttatttctttcacactctct
tgacctaatcaagccattatgccagctttggatccaaatactggggcaaa
tagaggtgggggcacaaaaccattttgtcaacttttttcaaataatctgc
agctagtattaagaatatatttttttagaaatattggtagtttcttatgc
aaggcatggtggcacaggcctttaatcccagcactttgggagacagaggc
aggcagattctctatagttcagtcagcctggtctacaattgagttcagaa
cgcaagtactgttacgcagagaattccttctttgaatgctaccctcccct
aatttaattaattgaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_113996888_113998037
seq2: B6Ng01-246M18.b_47_1204 (reverse)

seq1  ATGAGGG-ACTCT-GGCAGGCCTAAGGTCCTGCT-GCAA-GTGGAGAAAC  46
      ||||||| ||||| |||| | ||||||||||||| |||| ||||||||||
seq2  ATGAGGGAACTCTGGGCAAGACTAAGGTCCTGCTGGCAATGTGGAGAAAC  50

seq1  AA-GCAAAGAGTTTCCCCGTCGCCTCA-CAGGTGTGAAG-AACAC-AGCA  92
      || |||||||  ||  ||||||||||| ||||| ||||| ||||| ||||
seq2  AAGGCAAAGAAGTT-ACCGTCGCCTCACCAGGT-TGAAGAAACACAAGCA  98

seq1  GAGCACACTCTTGTTCCTCCTA-GGCTCTGTTCCCAGTGCGGCTGGGGAG  141
      ||||||| |||||||||||||| ||||||| |||||||||||||||||||
seq2  GAGCACAATCTTGTTCCTCCTAGGGCTCTG-TCCCAGTGCGGCTGGGGAG  147

seq1  CAGCTTGGTG-ACTGAATGTCTTAGTACCAGGACTGCAAAACCTATTCCT  190
      ||||| |||| |||||||||||||||||||||||||||||||||| ||||
seq2  CAGCTCGGTGAACTGAATGTCTTAGTACCAGGACTGCAAAACCTA-TCCT  196

seq1  GAACAAT-GCCAGGGGACCCAGGAGCTAAGCTGAGAGGGCACTCCCTAGT  239
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATGGCCAGGGGACCCAGGAGCTAAGCTGAGAGGGCACTCCCTAGT  246

seq1  ACTCCAGCATCAGAT-AAGCAGTATACCATACTGTTTGTGGAGATCAGAT  288
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACTCCAGCATCAGATAAAGCAGTATACCATACTGTTTGTGGAGATCAGAT  296

seq1  CCTACTCCATTAACTTAAAGGCCTCTTCAGTTATTTACATCAGAGCTATT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTCCATTAACTTAAAGGCCTCTTCAGTTATTTACATCAGAGCTATT  346

seq1  TTAGTAATGGAAACTGAAGCAGAGATGAGAGGCTGCAAAATTTGGAAAAT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAATGGAAACTGAAGCAGAGATGAGAGGCTGCAAAATTTGGAAAAT  396

seq1  GCCTATAGGTCAATGCTCAATATTTATTAGAAGATCCAGAATAAACAATA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATAGGTCAATGCTCAATATTTATTAGAAGATCCAGAATAAACAATA  446

seq1  TTTCTTTGGCCTAATCTGTGCTGTGCTTTCTGATCTATATGAGATTTGAC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGGCCTAATCTGTGCTGTGCTTTCTGATCTATATGAGATTTGAC  496

seq1  AGGTCTTTAGGTCACTTACACTTAAGTTCTTAGTAGCAAACATAATTTCA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTTAGGTCACTTACACTTAAGTTCTTAGTAGCAAACATAATTTCA  546

seq1  TCTAGAGAACACTGGGTGAATGCAAATTCAACCTAAGTCAGGCAGATTAA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGAACACTGGGTGAATGCAAATTCAACCTAAGTCAGGCAGATTAA  596

seq1  AAACACAAGAGAAATAAACCATGGTCTGCAGGAGGCTGCACGAGACCTGG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAAGAGAAATAAACCATGGTCTGCAGGAGGCTGCACGAGACCTGG  646

seq1  GGAGCCCAGTGCACTTGCTCCTTGCTAGGCCTTAATGCAGGCCCATCTCG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCCAGTGCACTTGCTCCTTGCTAGGCCTTAATGCAGGCCCATCTCG  696

seq1  GTCCTTCTGCCTCCCTCTCCGAATACTCTCAGGGGCAGAGGTCAAGTGCA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCTGCCTCCCTCTCCGAATACTCTCAGGGGCAGAGGTCAAGTGCA  746

seq1  CACAAGAAAAATGTGGACACAGAAAATTTCAGTTAGCTGGAAATACTTCC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAAAAATGTGGACACAGAAAATTTCAGTTAGCTGGAAATACTTCC  796

seq1  AGAGCAAAAGTGGTCGGTAATACGGATGCAGGCCTCCTGAGGAGAAAACA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAAAGTGGTCGGTAATACGGATGCAGGCCTCCTGAGGAGAAAACA  846

seq1  GTCCTCAGGACGGACTCATCGGCCTCCACAGCGAGGGCGAGGCCACACAC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAGGACGGACTCATCGGCCTCCACAGCGAGGGCGAGGCCACACAC  896

seq1  AGGAGAGCATGGGGCTCCCACTGCTCCACTCCGTCAGCCTGCTCAGCTTA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGCATGGGGCTCCCACTGCTCCACTCCGTCAGCCTGCTCAGCTTA  946

seq1  AAGAGACTACTGCATTACTGCATGAGGAAGCCTCAGGGAGAGGTGCGGTG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACTACTGCATTACTGCATGAGGAAGCCTCAGGGAGAGGTGCGGTG  996

seq1  GTTGCAAATTAACCACAAAACAACTGACATCTGTTTTGGACATCGTAAAT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAAATTAACCACAAAACAACTGACATCTGTTTTGGACATCGTAAAT  1046

seq1  ACATTGAACCACATGAAACCTTTAGATCGAAAGTGGTTAAATATAAGCAA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGAACCACATGAAACCTTTAGATCGAAAGTGGTTAAATATAAGCAA  1096

seq1  GTGCCCACAATTTACCTCCACAATTATTCTATGCCATTCTTGACTTGGGT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCACAATTTACCTCCACAATTATTCTATGCCATTCTTGACTTGGGT  1146

seq1  GCCTGTGAATTC  1150
      ||||||||||||
seq2  GCCTGTGAATTC  1158

seq1: chr8_113833952_113835019
seq2: B6Ng01-246M18.g_71_1138

seq1  GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCC  50

seq1  GAGGGTTCAACCTCGAGCGTGATGGTCCCCCCCCCCCCCCACAAGGGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTCAACCTCGAGCGTGATGGTCCCCCCCCCCCCCCACAAGGGTCT  100

seq1  TCACAAAAATCTGCATCGTGGCGGCGGCTCCACCCACGATGGCGGATCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAAATCTGCATCGTGGCGGCGGCTCCACCCACGATGGCGGATCGG  150

seq1  AAAGGAAGATCCGAGCGTGGCCGACGGGGTCTCCTGGCCGAAGGACCCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGATCCGAGCGTGGCCGACGGGGTCTCCTGGCCGAAGGACCCGG  200

seq1  CCTTCACTTGGAATCTTTCTGCTTCTACCTATTTCCCACTAAGTGGATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACTTGGAATCTTTCTGCTTCTACCTATTTCCCACTAAGTGGATTG  250

seq1  TCAAGTATCAAACACAGGGCTTTGTACAAGTACTCTTCCAACTATATCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTATCAAACACAGGGCTTTGTACAAGTACTCTTCCAACTATATCAC  300

seq1  TGGTCTCTGGATCACAGCAGTTTAGAGATTTCTGGGACCTGATGTACAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCTGGATCACAGCAGTTTAGAGATTTCTGGGACCTGATGTACAAG  350

seq1  TCAGACATGGCCATGAGCGTATTACCAGCAAGTTTTGTACTTAGTTCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACATGGCCATGAGCGTATTACCAGCAAGTTTTGTACTTAGTTCCCT  400

seq1  GGGCAAAGAGAAGGACTACAGTATTTTTACTATTACAACTGTTATTTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAAGAGAAGGACTACAGTATTTTTACTATTACAACTGTTATTTAAC  450

seq1  TCAGTGGCTTAAAACAGGAATATATTTACTAAGTTCACGTTTCTGTGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGCTTAAAACAGGAATATATTTACTAAGTTCACGTTTCTGTGAAT  500

seq1  TGGCAGTGGAGTCATTTTTTTTGGTCTTACGGGGGATCATTCATGCACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTGGAGTCATTTTTTTTGGTCTTACGGGGGATCATTCATGCACCT  550

seq1  GGATCAATTGTCAGCCTGGCTGGTCTAGCGTGAACTCAGATGAGACCGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAATTGTCAGCCTGGCTGGTCTAGCGTGAACTCAGATGAGACCGAA  600

seq1  CGCCTCTGCTCTGTGTAGTTCTTCATCTTCCCGCACGCCTACAGACCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTCTGCTCTGTGTAGTTCTTCATCTTCCCGCACGCCTACAGACCTTG  650

seq1  CTCATGGATGGATACTTTTTTGAGAGACGGAGAGAACATTTTAAAGCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGATGGATACTTTTTTGAGAGACGGAGAGAACATTTTAAAGCCTC  700

seq1  TGGAAACCTAGACTTGGAAGTAGTCCACTGTTATTTCTTTCACACTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACCTAGACTTGGAAGTAGTCCACTGTTATTTCTTTCACACTCTCT  750

seq1  TGACCTAATCAAGCCATTATGCCAGC-TTGGATCCAAATACTGGGGCAAA  799
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGACCTAATCAAGCCATTATGCCAGCTTTGGATCCAAATACTGGGGCAAA  800

seq1  TAGAGGTGGGGGCACAAAACCA-TTTGTCAAC-TTTTTCAAATAATCTGC  847
      |||||||||||||||||||||| ||||||||| |||||||||||||||||
seq2  TAGAGGTGGGGGCACAAAACCATTTTGTCAACTTTTTTCAAATAATCTGC  850

seq1  AGCTAGTATTAGAAATATA-TTTTTTAGAAATATTGGTAG-TTCTTATGC  895
      |||||||||||  |||||| |||||||||||||||||||| |||||||||
seq2  AGCTAGTATTAAGAATATATTTTTTTAGAAATATTGGTAGTTTCTTATGC  900

seq1  CAGGCATGGTGGCACAGGCCTTTAATCCCAGCAC-TTGGGAGACAGAGGC  944
       ||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAGGCATGGTGGCACAGGCCTTTAATCCCAGCACTTTGGGAGACAGAGGC  950

seq1  AGGCAGA-TCTCTATAAGTTCAAGGCCAGCCTGGTCTACAAATTGAGTTT  993
      ||||||| ||||||| ||||||  | ||||||||||||| ||||||| ||
seq2  AGGCAGATTCTCTAT-AGTTCA--GTCAGCCTGGTCTAC-AATTGAG-TT  995

seq1  CAGGACAGCCAGTACTGTTACGCAGAGAAACCCTGTCTTGAATGCCTACC  1043
      ||| || || |||||||||||||||||||  |||   ||||||| |||||
seq2  CAGAAC-GCAAGTACTGTTACGCAGAGAATTCCTTCTTTGAATG-CTACC  1043

seq1  CCCCCCCAAATTAATTAATTAAAAA  1068
      | |||| || |||||||||| ||||
seq2  CTCCCCTAATTTAATTAATTGAAAA  1068