BAC Information

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BAC

Clone NameB6Ng01-246P12
Chromosome8 (Build37)
Map Location 109,250,436 - 109,377,017
singlet/doubletdoublet
Overlap geneTmco7
Upstream geneGfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1
Downstream geneHas3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246P12.bB6Ng01-246P12.g
ACCGA055434GA055435
length1,074746
definitionB6Ng01-246P12.b B6Ng01-246P12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,250,436 - 109,251,163)(109,376,278 - 109,377,017)
sequence
gaattcaaatttgaaaagcaagtcttacccttgtatggttgtgcacactt
tttgtcccagcactcaggagacagaggcaggaggatctctaaggtcaaga
tcagcctgatctacagagcaagtcctaggatagccagagctacacagaga
aactctggaaaaaccaagcagccaagcaagcagccagccaaacaaacaag
caaacaagaaactgtgaagtgggaacttctggtttctttgggaagtcagt
tatgtcaaatgatgttttggtgggcacacatgtgaaaggatgttttgctg
aagcagacacaggaaaggacacgtgatgtttagaaagaatataaatatga
ccccacagacagtgggagctcaagcattggtttgtcttacttcagcttgc
tagtctttgctgacaacacggatgtattggtttgccctacgttgcattgt
tgagcttcacgtgtggtgacttcatagagggaaactcaccaaagagcttc
tcctgaggctcctgtggctttttgccacttcagtggcctgggccgattgg
caagcctcagggtttcttctggattgaactgccttccctgattcatgtgc
tgtgtctgccaagtggactggactgcagctgctggtttgtgtgtggtgtt
tgctagtggaccggactgaaaacaaggaacgttgggatcacctcaaagaa
tatttctaaacaggtccacttcccccgtatcctgataatctatcttttcc
actgcctctgttgggtggtgggctaaaggggatgttgaactcttattaaa
gtaggctataaaaaaatatgcctacaaaactgtgttataagaccacttta
aatttcatgcatcctctatttacagctcatctccatagcaacctgtgcag
tttttagatattctaaaaacaatactttctcagtagagttgccttagtgg
gtcagttcctgcattgcaatgactgaaaaggtatctttttacttcacttg
ttgaacagcagaatagaatagtcgaaaactacattagccatgcagggacc
atacttttactaccttaactagga
gaattccatactgtgatccaagctgtcttagaactcactatacagcccat
atttgactttgaactcactaaaaccctcctgtctcagccctgtgagcgcc
atggtcataagtgttaactaccatgcctgacttagaagagttatctgaca
gtttttaataatttggtcatgcttacaagggtgtcactaaatcatcttcc
ctttgaatttgataatgaagtccggaagaaaaaaattactctctcaaatt
gagaacaccaaaaattaataaaatcaaatactctagtcctttgatagcag
ttcaaactaagagtccacttatacagagagataaagagactaaggctggg
aggggtggacgtgttcagatggagaagatcttaaagtcatcagtgtacac
cttcaggcacactggcctaaacgccgtggacagtactcggcctgcgaagc
aggctctatcttttaaaatatattatatataattttaaaatgacttttaa
ttacgtgtgtgtgtgtgtttatgtacatgtgagtgctggtactctttttt
ttttttttttttttttttttttggtttttcgagacagggtttctctgtat
agcactggttgtcctggaactcacttttgtaaaccaggctgggctcaaac
tcagacattcccccgcctgtgcctcccctagtgatgggattaaatggggt
ggggcctccccgcccgggcttgagtgctgtggactcttaaaaagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_109250436_109251163
seq2: B6Ng01-246P12.b_385_1117

seq1  TATAAATATGACCCCACAGACAGTGGGAGCTCAAGCATTGGTTTGTCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATATGACCCCACAGACAGTGGGAGCTCAAGCATTGGTTTGTCTTA  50

seq1  CTTCAGCTTGCTAGTCTTTGCTGACAACACGGATGTATTGGTTTGCCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTTGCTAGTCTTTGCTGACAACACGGATGTATTGGTTTGCCCTA  100

seq1  CGTTGCATTGTTGAGCTTCACGTGTGGTGACTTCATAGAGGGAAACTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGCATTGTTGAGCTTCACGTGTGGTGACTTCATAGAGGGAAACTCAC  150

seq1  CAAAGAGCTTCTCCTGAGGCTCCTGTGGCTTTTTGCCACTTCAGTGGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGCTTCTCCTGAGGCTCCTGTGGCTTTTTGCCACTTCAGTGGCCT  200

seq1  GGGCCGATTGGCAAGCCTCAGGGTTTCTTCTGGATTGAACTGCCTTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCGATTGGCAAGCCTCAGGGTTTCTTCTGGATTGAACTGCCTTCCCT  250

seq1  GATTCATGTGCTGTGTCTGCCAAGTGGACTGGACTGCAGCTGCTGGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATGTGCTGTGTCTGCCAAGTGGACTGGACTGCAGCTGCTGGTTTG  300

seq1  TGTGTGGTGTTTGCTAGTGGACCGGACTGAAAACAAGGAAGGTTGGGATC  350
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGTGTGGTGTTTGCTAGTGGACCGGACTGAAAACAAGGAACGTTGGGATC  350

seq1  ACCTCAAAGAATATTTCTAAACAGGTCCACTTCCCCCGTATCCTGATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAAAGAATATTTCTAAACAGGTCCACTTCCCCCGTATCCTGATAAT  400

seq1  CTTTCTTTTCCACTGCCTCTGTTGGGTGGTGGGCTAAAGGGGAGGTTGAA  450
      || |||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTATCTTTTCCACTGCCTCTGTTGGGTGGTGGGCTAAAGGGGATGTTGAA  450

seq1  CTCTTATTAAAGTAGGCTATAAAAAAATATGCCTACAAAACTGTGTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTCTTATTAAAGTAGGCTATAAAAAAATATGCCTACAAAACTGTGTT-AT  499

seq1  AAGACCACTTTAAATTTCATGCATCCTCCAATTTACAGCTTATCTCCATA  550
      ||||||||||||||||||||||||||| | |||||||||| |||||||||
seq2  AAGACCACTTTAAATTTCATGCATCCT-CTATTTACAGCTCATCTCCATA  548

seq1  GCATCCTGTGCAGTTTTAAGATATTCTAAAAACAATACTTTCAGAGTAGA  600
      ||| ||||||||||||| ||||||||||||||||||||||||  ||||||
seq2  GCAACCTGTGCAGTTTTTAGATATTCTAAAAACAATACTTTCTCAGTAGA  598

seq1  GTTG-CTTAGTGGGTCAGTTCCTGCAGTGTATTGACTGAGACATAA--TT  647
      |||| ||||||||||||||||||||| || | ||||||| |    |  ||
seq2  GTTGCCTTAGTGGGTCAGTTCCTGCATTGCAATGACTGAAAAGGTATCTT  648

seq1  TTTACTAC-CTTCTTTAAAAGTAGGAGATAAAAGT-GAAAAATACATTGG  695
      |||||| | ||| || || || || | | || ||| ||||| |||||| |
seq2  TTTACTTCACTTGTTGAACAGCAGAATAGAATAGTCGAAAACTACATTAG  698

seq1  CAATGCAGGGACCATA-TTTTACCA-CTTAACTAG  728
      | |||||||||||||| |||||| | |||||||||
seq2  CCATGCAGGGACCATACTTTTACTACCTTAACTAG  733

seq1: chr8_109376278_109377017
seq2: B6Ng01-246P12.g_69_814 (reverse)

seq1  GGCTTCTTAAGAGTAC-CAGCACTCAAG-CCGGGCGTGGTGG-CGCACGC  47
      ||||| |||||||| | ||||||||||| ||||||| || || | ||| |
seq2  GGCTTTTTAAGAGTCCACAGCACTCAAGCCCGGGCGGGGAGGCCCCACCC  50

seq1  C-TTTAATCCCAGCACT-CGGGAGGCAGAGGCAGGTGGATCTCTGAGTTT  95
      | |||||||||| ||||  |||||||| |||| || | || |||||||||
seq2  CATTTAATCCCATCACTAGGGGAGGCACAGGCGGGGGAATGTCTGAGTTT  100

seq1  GAGGCCAGCCTGGTCTAC-AAAGTGAGTTCCAGGACAGCCAGGGCTATAC  144
      ||| |||||||||| ||| |||||||||||||||||| |||| |||||||
seq2  GAGCCCAGCCTGGTTTACAAAAGTGAGTTCCAGGACAACCAGTGCTATAC  150

seq1  AGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAA  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAA  200

seq1  AAGAGTACCAGCACTCACATGTACATAAACACACACACACACGTAATTAA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTACCAGCACTCACATGTACATAAACACACACACACACGTAATTAA  250

seq1  AAGTCATTTTAAAATTATATATAATATATTTTAAAAGATAGAGCCTGCTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATTTTAAAATTATATATAATATATTTTAAAAGATAGAGCCTGCTT  300

seq1  CGCAGGCCGAGTACTGTCCACGGCGTTTAGGCCAGTGTGCCTGAAGGTGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGGCCGAGTACTGTCCACGGCGTTTAGGCCAGTGTGCCTGAAGGTGT  350

seq1  ACACTGATGACTTTAAGATCTTCTCCATCTGAACACGTCCACCCCTCCCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGATGACTTTAAGATCTTCTCCATCTGAACACGTCCACCCCTCCCA  400

seq1  GCCTTAGTCTCTTTATCTCTCTGTATAAGTGGACTCTTAGTTTGAACTGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAGTCTCTTTATCTCTCTGTATAAGTGGACTCTTAGTTTGAACTGC  450

seq1  TATCAAAGGACTAGAGTATTTGATTTTATTAATTTTTGGTGTTCTCAATT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAGGACTAGAGTATTTGATTTTATTAATTTTTGGTGTTCTCAATT  500

seq1  TGAGAGAGTAATTTTTTTCTTCCGGACTTCATTATCAAATTCAAAGGGAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAGTAATTTTTTTCTTCCGGACTTCATTATCAAATTCAAAGGGAA  550

seq1  GATGATTTAGTGACACCCTTGTAAGCATGACCAAATTATTAAAAACTGTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTTAGTGACACCCTTGTAAGCATGACCAAATTATTAAAAACTGTC  600

seq1  AGATAACTCTTCTAAGTCAGGCATGGTAGTTAACACTTATGACCATGGCG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACTCTTCTAAGTCAGGCATGGTAGTTAACACTTATGACCATGGCG  650

seq1  CTCACAGGGCTGAGACAGGAGGGTTTTAGTGAGTTCAAAGTCAAATATGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGGGCTGAGACAGGAGGGTTTTAGTGAGTTCAAAGTCAAATATGG  700

seq1  GCTGTATAGTGAGTTCTAAGACAGCTTGGATCACAGTATGGAATTC  740
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTATAGTGAGTTCTAAGACAGCTTGGATCACAGTATGGAATTC  746