BAC Information

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BAC

Clone NameB6Ng01-247B12
Chromosome8 (Build37)
Map Location 107,286,775 - 107,287,955
singlet/doubletsinglet
Overlap geneLOC628050
Upstream geneLOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6
Downstream gene4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247B12.bB6Ng01-247B12.g
ACCGA055527GA055528
length1,184956
definitionB6Ng01-247B12.b B6Ng01-247B12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaacatcaacccagcttcctcaaggatgtcaggccaccccacgt
gaacgctgaccacgaagatgaggttccttttgtctttgggtccatgcttt
ttgggatgaaacgtgagtctttattactactttattattattattattat
tattattattattaattattattattattttaactgaatgaggtcccaga
tgattttctgggtaactgctgaggtctcagttcatttgagaaaatctagg
attctgggagaggacaaaatcaaatatcatggcccaaaaatttataacca
gtttagaatctgcacccttcccagtctagcctgtgatagaggatctaaca
gcacactggggcaggaattcagttagaggctcatatggatcttgctactg
gataatgaagaagtgaggcagcaaaccaataatttgaggtccaacaagag
ttgagattgtgagtgttgtgtgagatggcatatgcttgggtttttgtctt
tctcatgggtctagttgacatcactaaggaggagaagctgctgaatcaga
ggatgatgaagtactgggccaactttgcaagacatgggtgagaacacacc
tcttgccccacatgtcggttgtgggtctctaactcgggctcaattttaga
tggtgactttcttagcatgcatgactttgatcacaagatggagtcttctc
tacacaataacccatttatatgaatactttgtagttgtcaggtactggtc
atctcacggtttctgagctggtggggtatagtgttgtggtactgctcttt
agatcttgcctcatagagggagacataaaagagctcatgtagtcttcccc
cacatgaagcagaactagcaagtgacacttgtatgtgcgtatcacgactc
ctttctcactagtccccttaaccactgtcttccttgtttcattgccatga
cccaaaacatgggaccagagtgacctcacccttcttttcttggtggctta
tccacaggaaccccacagtgaggtctacctactgggccatgctgaccaag
atgagaagtatctacagcttggaatttcagactgcttgtgggccaaagca
cttgatgccagtatgctggcagtttcttggcacaagaccttgccccggaa
gattcaggagctcaaataggattctgtgaaaata
gaattcaagaaaaaactagatatcaagaaaacatataatccagttaaagt
gggatatggacttaaccaaagaattctcaatagaggaaactcaaatggtt
gagaaacacttttaaaaatgttcagtatccttagctatctgggacatgca
aatcaaaactaccttgagatttcatcttacacctgtgaaaacggctaaga
ttaacaaagcaagtggcagctcattgtggtgaggatgtggagtaagagga
ctagacattcactgctggtgggaatgcaaacttgcacagccactatggta
atcagtatggcagatcttcagggaaatgggaacagatctacctcaagatc
cagctctacaactcttgggcatatttccaaaatactcttttcctaccaga
ggagacccttgctcaaccatcttcataataaccagaaattggaagcaacc
cagatgtctctcaacaaatgaatagctaaaggagatgtggcacatttaca
caacgaagtattactcagctgttaaaacatatgacatcatgaaaattgca
ggcaaatggatagaggttggaaaaaaccatccctagtgaggtgtcccaaa
tccagaatggtaaatatagtatttgcttatatatgtacattagctattaa
atcaatgacaaccaagctacagttcatagaaaaggtaggtatagagcaag
ggactagagggaatgaattgatctcattaggaaaaagaaataaaatagat
aattatggatggatgagggactggaatggaaggttcaagtggtgagggag
ggaatatgggaagagacagctaaaactaaggggcatttagggctagtatg
gaaactcaatacagtatatacttcctatatataaaaataaaattgatatg
tgataagtatatataaatgtattatatatatttaggattatatatatgta
tattta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_107286775_107287955
seq2: B6Ng01-247B12.b_49_1232

seq1  GAATTCCAACATCAACCCAGCTTCCTCAAGGATGTCAGGCCACCCCACGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACATCAACCCAGCTTCCTCAAGGATGTCAGGCCACCCCACGT  50

seq1  GAACGCTGACCACGAAGATGAGGTTCCTTTTGTCTTTGGGTCCATGCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGCTGACCACGAAGATGAGGTTCCTTTTGTCTTTGGGTCCATGCTTT  100

seq1  TTGGGATGAAACGTGAGTCTTTATTACTACTTTATTATTATTATTATTAT  150
      |||||||||||||||||||||||||||||||   ||||||||||||||||
seq2  TTGGGATGAAACGTGAGTCTTTATTACTACT---TTATTATTATTATTAT  147

seq1  TATTATTATTATTATTAATTATTATTATTATTTTAACTGAATGAGGTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATTATTATTAATTATTATTATTATTTTAACTGAATGAGGTCCC  197

seq1  AGATGATTTTCTGGGTAACTGCTGAGGTCTCAGTTCATTTGAGAAAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATTTTCTGGGTAACTGCTGAGGTCTCAGTTCATTTGAGAAAATCT  247

seq1  AGGATTCTGGGAGAGGACAAAATCAAATATCATGGCCCAAAAATTTATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTCTGGGAGAGGACAAAATCAAATATCATGGCCCAAAAATTTATAA  297

seq1  CCAGTTTAGAATCTGCACCCTTCCCAGTCTAGCCTGTGATAGAGGATCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTAGAATCTGCACCCTTCCCAGTCTAGCCTGTGATAGAGGATCTA  347

seq1  ACAGCACACTGGGGCAGGAATTCAGTTAGAGGCTCATATGGATCTTGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACACTGGGGCAGGAATTCAGTTAGAGGCTCATATGGATCTTGCTA  397

seq1  CTGGATAATGAAGAAGTGAGGCAGCAAACCAATAATTTGAGGTCCAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATAATGAAGAAGTGAGGCAGCAAACCAATAATTTGAGGTCCAACAA  447

seq1  GAGTTGAGATTGTGAGTGTTGTGTGAGATGGCATATGCTTGGGTTTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGAGATTGTGAGTGTTGTGTGAGATGGCATATGCTTGGGTTTTTGT  497

seq1  CTTTCTCATGGGTCTAGTTGACATCACTAAGGAGGAGAAGCTGCTGAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCATGGGTCTAGTTGACATCACTAAGGAGGAGAAGCTGCTGAATC  547

seq1  AGAGGATGATGAAGTACTGGGCCAACTTTGCAAGACATGGGTGAGAACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATGATGAAGTACTGGGCCAACTTTGCAAGACATGGGTGAGAACAC  597

seq1  ACCTCTTGCCCCACATGTCGGTTGTGGGTCTCTAACTCGGGCTCAATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTGCCCCACATGTCGGTTGTGGGTCTCTAACTCGGGCTCAATTTT  647

seq1  AGATGGTGACTTTCTTAGCATGCATGACTTTGATCACAAGATGGAGTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTGACTTTCTTAGCATGCATGACTTTGATCACAAGATGGAGTCTT  697

seq1  CTCTACACAATAACCCATTTATATGAATACTTTGTAGTTGTCAGGTACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACACAATAACCCATTTATATGAATACTTTGTAGTTGTCAGGTACTG  747

seq1  GTCATCTCACGGTTTCTGAGCTGGTGGGGTATAGTGTTGTGGTACTGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTCACGGTTTCTGAGCTGGTGGGGTATAGTGTTGTGGTACTGCTC  797

seq1  TTTAGATCTTGCCTCATAGAGGGAGACATAAAAGAGCTCATGTAGTCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATCTTGCCTCATAGAGGGAGACATAAAAGAGCTCATGTAGTCTTC  847

seq1  CCCCACATGAAGCAGAAACTAGCAAGTGACACTTGTATGTGCGTATCACG  900
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCCCACATGAAGCAG-AACTAGCAAGTGACACTTGTATGTGCGTATCACG  896

seq1  ACTCCTTTCTCACTAGTCCCCTTAACCACTGTCTTCCTTGTTTCATTGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTTCTCACTAGTCCCCTTAACCACTGTCTTCCTTGTTTCATTGCC  946

seq1  ATGACCCAAAACATGGGACCAGAGTGACCTCACCCTTCTTTTCTTGGTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCAAAACATGGGACCAGAGTGACCTCACCCTTCTTTTCTTGGTGG  996

seq1  CTTATCCACAGGAACCCCAACAGTGAAGGTCTACCCTACTGGCCCATGCT  1050
      |||||||||||||||||| |||||| ||||||| |||||||| |||||||
seq2  CTTATCCACAGGAACCCC-ACAGTG-AGGTCTA-CCTACTGGGCCATGCT  1043

seq1  GAACCAAGATGAGAAGTATCTACAGC-TGGACATTCAGACTGC-TGTGGG  1098
      | |||||||||||||||||||||||| ||||  |||||||||| ||||||
seq2  G-ACCAAGATGAGAAGTATCTACAGCTTGGAATTTCAGACTGCTTGTGGG  1092

seq1  CC-AAGCACTGAAGGCAAGAAGGCT-GCAGTT--CTGGACCAAGACTCTG  1144
      || |||||||  | || || | ||| ||||||   |||  ||||||  ||
seq2  CCAAAGCACTTGATGCCAGTATGCTGGCAGTTTCTTGGCACAAGACCTTG  1142

seq1  CCCCAGAAGATTCAGGAG-TTAAATAG----ATCTGAAAATA  1181
      |||| ||||||||||||| | ||||||     | ||||||||
seq2  CCCCGGAAGATTCAGGAGCTCAAATAGGATTCTGTGAAAATA  1184