BAC Information

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BAC

Clone NameB6Ng01-247F07
Chromosome8 (Build37)
Map Location 35,542,747 - 35,698,799
singlet/doubletdoublet
Overlap geneLOC666746
Upstream geneLOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159
Downstream geneDusp4, LOC675578, Tnks, LOC666792, LOC666797, LOC666804, Ppp1r3b, Thex1, Mfhas1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247F07.bB6Ng01-247F07.g
ACCGA055693GA055694
length1,0731,167
definitionB6Ng01-247F07.b B6Ng01-247F07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,542,747 - 35,543,811)(35,697,663 - 35,698,799)
sequence
gaattcttcaagggaggttccatgttagcacttccttagttcctaatcct
gggtgagccattcgaatcaaaagatccttatcaagagattggtatgttcc
cagtgcaggctgggacataaagccatataaggaatagctaactcagagat
accttcagctaggtggtacacagaaacccagatatcaaaattccttcacc
ttggttcctatatgggcctatcagaaattgctttcttggtgtcttagtta
gggttttactgctgtgaacagacaccatgaccaaggcaagtcttataaaa
aacaacatttaattgggactggcttacatgttcagaggttcagtccatta
tcatcaaggtgggagcatggcagtatccaggcaggcatggcgtaggagga
gctgagagttctatgtcttcatccaaaggctgctagtggaagactgacat
ccaggcaactagggtgaggatcttatacccatacccacagtgacacaccc
attccaaccaggtcacacctattccaacaaggccacaccttcagatggtg
ccactccctggtccaaggatatacaaaccatcacactcgggttgcaggca
ttggagaggaatctgtgattgggcaggggatctggaagtggagaatccta
gggaagaaaggagtgggggtggggttccaaatgaaagttacctctaccct
ctccatctgtccccttctaaccttgagaggaaaacctgttgaattcattg
tctttcccctaccaacagtatgccctgccttttctccaccctcccatccc
acctcccctatcttcaatgctgactggatgtccctgtcaccccaagcctc
tttgggtcgcttttagcaagcctggaggactgtttgacttgtgtggatga
gaacacaagtcacccaggctgtgtggtgggtgaaataccatctgattcag
acgttccttcgtgacttccttccccatcttgactactgcctccaaacata
gccataagtgggggtggaatcctagcctctcctcctgttccctggggaat
gctggggatggaggcatggcttt
gaattctagagtttttgagtatttgaaaatgtctttgttctcatatttgg
tggatggtttgtctggtaatatgattttaggtcttactactgtttccctc
agaactctggagctggcgttggttcgagtcttcgggttcagtgtgagccg
cagccctctgaggtgtttaggttttcttccttttgcatgtgatacttctg
ttctttgaaattatttttatcttctccatttaaaaaaatgcttagtaggc
tttagtgtggttcgttgctcatccctttaaaacattattacctttattta
tttgtttgtttgtgtgcgcatgtggaggtcagaggacaggttgtgagaac
cggttctctctttctatcatctggaccccaggagtcgaactcaggtggac
aggcttagctactctttatccacagagccatcatgccagccagcttattc
tttgtgctgaggatttgtggttcatttcagtctagaggctcatgttgctt
agtgctgttttctgtcacttcgctcatcattacctttcttctttcttttc
tcagaatgaaagctagttaacagctagttaacgccaggctccctgaacca
attctctaggttctggagtcgattctttacttttattctcagcgatatgg
ttaccctcctaaaattttgaggactgaacccaggagcctgcacacacctc
acaaggccactgaaccgtatactcagctcaaatttatgttctttattttg
atcaatcggggttcttctttgtatattcagtcctcattatttgcattcat
gtttccacagggatctatctagttactgttttacccaacagtatgattct
cagttctagaattgtcatgttttataatttctgtattttttcctgaagtc
ccctatctttttttatttcattgtgatgatatttttctttatatattaaa
tgaacatagtttctaacagcttacttttaaaacttattgccctatacttt
cacatgtttctcttcatctcaaggatcagtttcttatcagttaccttttc
ctcttggggaaatgaagttccccttactttctcatggctgttgcctgaac
ctgtattctgggaccattggaaaacattctggctttataggaccttggaa
gttgttaattacctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_35542747_35543811
seq2: B6Ng01-247F07.b_47_1119

seq1  GAATTCTTCAAGGGAGGTTCCATGTTAGCACTTCCTTAGTTCCTAATCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAAGGGAGGTTCCATGTTAGCACTTCCTTAGTTCCTAATCCT  50

seq1  GGGTGAGCCATTCGAATCAAAAGATCCTTATCAAGAGATTGGTATGTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAGCCATTCGAATCAAAAGATCCTTATCAAGAGATTGGTATGTTCC  100

seq1  CAGTGCAGGCTGGGACATAAAGCCATATAAGGAATAGCTAACTCAGAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAGGCTGGGACATAAAGCCATATAAGGAATAGCTAACTCAGAGAT  150

seq1  ACCTTCAGCTAGGTGGTACACAGAAACCCAGATATCAAAATTCCTTCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCAGCTAGGTGGTACACAGAAACCCAGATATCAAAATTCCTTCACC  200

seq1  TTGGTTCCTATATGGGCCTATCAGAAATTGCTTTCTTGGTGTCTTAGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCCTATATGGGCCTATCAGAAATTGCTTTCTTGGTGTCTTAGTTA  250

seq1  GGGTTTTACTGCTGTGAACAGACACCATGACCAAGGCAAGTCTTATAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTACTGCTGTGAACAGACACCATGACCAAGGCAAGTCTTATAAAA  300

seq1  AACAACATTTAATTGGGACTGGCTTACATGTTCAGAGGTTCAGTCCATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACATTTAATTGGGACTGGCTTACATGTTCAGAGGTTCAGTCCATTA  350

seq1  TCATCAAGGTGGGAGCATGGCAGTATCCAGGCAGGCATGGCGTAGGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAAGGTGGGAGCATGGCAGTATCCAGGCAGGCATGGCGTAGGAGGA  400

seq1  GCTGAGAGTTCTATGTCTTCATCCAAAGGCTGCTAGTGGAAGACTGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAGTTCTATGTCTTCATCCAAAGGCTGCTAGTGGAAGACTGACAT  450

seq1  CCAGGCAACTAGGGTGAGGATCTTATACCCATACCCACAGTGACACACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAACTAGGGTGAGGATCTTATACCCATACCCACAGTGACACACCC  500

seq1  ATTCCAACCAGGTCACACCTATTCCAACAAGGCCACACCTTCAGATGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAACCAGGTCACACCTATTCCAACAAGGCCACACCTTCAGATGGTG  550

seq1  CCACTCCCTGGTCCAAGGATATACAAACCATCACACTCGGGTTGCAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCCTGGTCCAAGGATATACAAACCATCACACTCGGGTTGCAGGCA  600

seq1  TTGGAGAGGAATCTGTGATTGGGCAGGGGATCTGGAAGTGGAGAATCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAGGAATCTGTGATTGGGCAGGGGATCTGGAAGTGGAGAATCCTA  650

seq1  GGGAAGAAAGGAGTGGGGGTGGGGTTCCAAATGAAAGTTACCTCTACCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAAAGGAGTGGGGGTGGGGTTCCAAATGAAAGTTACCTCTACCCT  700

seq1  CTCCATCTGTCCCCTTCTAACCTTGAGAGGAAAACCTGTTGAATTCATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCTGTCCCCTTCTAACCTTGAGAGGAAAACCTGTTGAATTCATTG  750

seq1  TCTTTCCCCTACCAACAGTATGCCCTGCCTTTTCTCCACCCTCCCATCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCCCTACCAACAGTATGCCCTGCCTTTTCTCCACCCTCCCATCCC  800

seq1  ACCTCCCCTATCTTCAATGCTGACTGGATGTCCCTGTCACCCCAAGCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCCTATCTTCAATGCTGACTGGATGTCCCTGTCACCCCAAGCCTC  850

seq1  TTTGGGTCGCTTTTAGCAAGCCTGGAGGACTGTTTGACTTGTGTGGATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTCGCTTTTAGCAAGCCTGGAGGACTGTTTGACTTGTGTGGATGA  900

seq1  GAACACAAGTCACCCAGGCTGTGTGGTGGGTGAAATACCATCTGATTCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAAGTCACCCAGGCTGTGTGGTGGGTGAAATACCATCTGATTCAG  950

seq1  ACGTTCCTTCGTGACTTCC-TCCCCATC-TGACTACTGCCTCCAAACATA  998
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  ACGTTCCTTCGTGACTTCCTTCCCCATCTTGACTACTGCCTCCAAACATA  1000

seq1  G-CAT-AGTGGGGGTGG-ATCCCAGCCTCT-CTCCTGTTCCCT-GGGAAT  1043
      | ||| ||||||||||| |||| ||||||| |||||||||||| ||||||
seq2  GCCATAAGTGGGGGTGGAATCCTAGCCTCTCCTCCTGTTCCCTGGGGAAT  1050

seq1  GCT-GGGATGGAGGCATGGCTTT  1065
      ||| |||||||||||||||||||
seq2  GCTGGGGATGGAGGCATGGCTTT  1073

seq1: chr8_35697663_35698799
seq2: B6Ng01-247F07.g_67_1233 (reverse)

seq1  AAAAAGTAATTACAAACTTCCAA-GTCTTATAAAG-CAG-ATG-TTTCCA  46
      |||| |||||||  ||||||||| ||| ||||||| ||| ||| ||||||
seq2  AAAAGGTAATTAACAACTTCCAAGGTCCTATAAAGCCAGAATGTTTTCCA  50

seq1  ATG--TCCAGAATACA-GTTCAG--CACAGCCAAGAAGAAAGT-AGGGGA  90
      |||   |||||||||| ||||||   ||||||| | ||||||| ||||||
seq2  ATGGTCCCAGAATACAGGTTCAGGCAACAGCCATG-AGAAAGTAAGGGGA  99

seq1  --CTCATT--CCCAAGAG--AAAGGTAACTGAT-AGAAACTGATCC-TGA  132
         |||||  ||||||||  ||||||||||||| |||||||||||| |||
seq2  ACTTCATTTCCCCAAGAGGAAAAGGTAACTGATAAGAAACTGATCCTTGA  149

seq1  GATG-AGAGAAACATGTG-AAGTATA-GGCAAT-AGTTTT-AAAGT-AGC  176
      |||| ||||||||||||| ||||||| |||||| |||||| ||||| |||
seq2  GATGAAGAGAAACATGTGAAAGTATAGGGCAATAAGTTTTAAAAGTAAGC  199

seq1  TGTTAG-AACTATGTTCA-TTAATATATAA--GAAAATATCATCACAATG  222
      |||||| ||||||||||| |||||||||||   |||||||||||||||||
seq2  TGTTAGAAACTATGTTCATTTAATATATAAAGAAAAATATCATCACAATG  249

seq1  AA--TAAAAAAGATAGGGGACTTCAGG-AAAAATACAGAAATTATAAAAC  269
      ||   |||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAATAAAAAAAGATAGGGGACTTCAGGAAAAAATACAGAAATTATAAAAC  299

seq1  ATGACAATTCTAGAACTGAGAATCATACTGTTGGGTAAAACAGTAACTAG  319
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAATTCTAGAACTGAGAATCATACTGTTGGGTAAAACAGTAACTAG  349

seq1  ATAGATCCCTGTGGAAACATGAATGCAAATAATGAGGACTGAATATACAA  369
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATCCCTGTGGAAACATGAATGCAAATAATGAGGACTGAATATACAA  399

seq1  AGAAGAACCCCGATTGATCAAAATAAAGAACATAAATTTGAGCTGAGTAT  419
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAACCCCGATTGATCAAAATAAAGAACATAAATTTGAGCTGAGTAT  449

seq1  ACGGTTCAGTGGCCTTGTGAGGTGTGTGCAGGCTCCTGGGTTCAGTCCTC  469
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTTCAGTGGCCTTGTGAGGTGTGTGCAGGCTCCTGGGTTCAGTCCTC  499

seq1  AAAATTTTAGGAGGGTAACCATATCGCTGAGAATAAAAGTAAAGAATCGA  519
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTAGGAGGGTAACCATATCGCTGAGAATAAAAGTAAAGAATCGA  549

seq1  CTCCAGAACCTAGAGAATTGGTTCAGGGAGCCTGGCGTTAACTAGCTGTT  569
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAACCTAGAGAATTGGTTCAGGGAGCCTGGCGTTAACTAGCTGTT  599

seq1  AACTAGCTTTCATTCTGAGAAAAGAAAGAAGAAAGGTAATGATGAGCGAA  619
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGCTTTCATTCTGAGAAAAGAAAGAAGAAAGGTAATGATGAGCGAA  649

seq1  GTGACAGAAAACAGCACTAAGCAACATGAGCCTCTAGACTGAAATGAACC  669
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGAAAACAGCACTAAGCAACATGAGCCTCTAGACTGAAATGAACC  699

seq1  ACAAATCCTCAGCACAAAGAATAAGCTGGCTGGCATGATGGCTCTGTGGA  719
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCCTCAGCACAAAGAATAAGCTGGCTGGCATGATGGCTCTGTGGA  749

seq1  TAAAGAGTAGCTAAGCCTGTCCACCTGAGTTCGACTCCTGGGGTCCAGAT  769
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGTAGCTAAGCCTGTCCACCTGAGTTCGACTCCTGGGGTCCAGAT  799

seq1  GATAGAAAGAGAGAACCGGTTCTCACAACCTGTCCTCTGACCTCCACATG  819
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAAAGAGAGAACCGGTTCTCACAACCTGTCCTCTGACCTCCACATG  849

seq1  CGCACACAAACAAACAAATAAATAAAGGTAATAATGTTTTAAAGGGATGA  869
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACACAAACAAACAAATAAATAAAGGTAATAATGTTTTAAAGGGATGA  899

seq1  GCAACGAACCACACTAAAGCCTACTAAGCATTTTTTTAAATGGAGAAGAT  919
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACGAACCACACTAAAGCCTACTAAGCATTTTTTTAAATGGAGAAGAT  949

seq1  AAAAATAATTTCAAAGAACAGAAGTATCACATGCAAAAGGAAGAAAACCT  969
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAATTTCAAAGAACAGAAGTATCACATGCAAAAGGAAGAAAACCT  999

seq1  AAACACCTCAGAGGGCTGCGGCTCACACTGAACCCGAAGACTCGAACCAA  1019
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCTCAGAGGGCTGCGGCTCACACTGAACCCGAAGACTCGAACCAA  1049

seq1  CGCCAGCTCCAGAGTTCTGAGGGAAACAGTAGTAAGACCTAAAATCATAT  1069
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAGCTCCAGAGTTCTGAGGGAAACAGTAGTAAGACCTAAAATCATAT  1099

seq1  TACCAGACAAACCATCCACCAAATATGAGAACAAAGACATTTTCAAATAC  1119
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGACAAACCATCCACCAAATATGAGAACAAAGACATTTTCAAATAC  1149

seq1  TCAAAAACTCTAGAATTC  1137
      ||||||||||||||||||
seq2  TCAAAAACTCTAGAATTC  1167