BAC Information

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BAC

Clone NameB6Ng01-248B05
Chromosome8 (Build37)
Map Location 4,959,254 - 5,103,971
singlet/doubletdoublet
Overlap geneLOC100039687, LOC436026, Slc10a2
Upstream geneLOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359
Downstream geneLOC434275, LOC623409, LOC669429, LOC100040360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248B05.bB6Ng01-248B05.g
ACCGA056243GA056244
length1,102969
definitionB6Ng01-248B05.b B6Ng01-248B05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,102,624 - 5,103,971)(4,959,254 - 4,959,776)
sequence
gaattcataaattcattttaaatctggtgacattaagaggaaacattctt
cagcagtcattttaattatgcttatttttttataaaataaggagaaaata
atgtctctctttttcaagagagtaatctaactttaacatttgtccaatac
aacttgtgccagttttaactaacactgggtgggagggaggactggtaact
aatagaaataagaaacattactgggactagagcaggagtttgagggttgt
tgttctgttttgttttgtttttacttaatcactttacgtccctatcactg
ccctgctcccagtcactcgttccacaattttcccccatgcctccgcctct
tctcatctaagcaagtgggtccccactaggtatctcccacgctggttcac
agcaagtctctgtaaggataggttcatcctctcccactgaggccagacaa
ggcagtcaggaagaacaacttatcccatatacaggcaacagattttggga
cagaccctattcccacattatgtttgggacccacattaagaccaaactgc
acatttgctacatatgttcatggaggcctagatccagccatgtatgttct
ttgattggcagtttagtcaatatgagccccattggccccagttagtttac
tctgtaggtattcttatggtgtcctccccctccaacccccacaattctat
ccctcactcttccactcttccatgagactctctggtctctgcctgacatt
tggctattggactctgaatgtttccagctagtgttcattaaatgctggac
aacctgccatcagctctgttggtccctgggagcctggtgagcagctgaga
acgagccaccaacaccaaactggtgctatttttctgatgccttagaaaac
aaagaacatgcattattcatttttgcataaggacatagaattactgccct
agcaacatatactactagtcttaaaagaaaagccctgtgaaaaaaaccac
agatagtaaatgctactgacatttagttaatctgtgaaccacatatagta
tcaggattttttttaggcttctacaccaatgatctggaacatacacagag
at
gaattctcgaagcatgctaagcagtagtgaagaataaaaaaatactgaac
tcttcctcaccccagagcccgacccctcccatctagagattgttcccaga
acactcctgaactcttcaccccagaatgcattcctgaactcctcacccta
gagttcgaaccctcccaactaaaatctgttccaagaacattttttgagat
aagggcctcctggaacaacctcagaatgaaccgggtacattgccaaataa
taggacatgaccccttagttacgtagaattcccttggcagaaccccttgt
cccttggcagaaccccttagttatgcaaacttgtactttccctgccccgc
tctccccccttgagtttttcctatataagcctgtgaaaaatttggctcga
ggtcgattctcctctacaacatactaggtgcatgagtttcgaccccagag
ctctggtccatgtgctttcttgctgttactttattaaatcttgccttcta
cattttgagttcggtctcagtgtcttcttgggtccgcggctgtcccgagg
cttgagtgagggtctcccttcgggggtctttcatttgggggctcgtccag
gatcagcgcgaccacccagaggtcctagacccacttaaaggtaagattct
ttgttctgtcttggtctggtgtctgtgttctgtttctaagtttggtgcga
tcgcagtttcggttttgcggacgctcagtgagaccgcgctccgagaggga
acgcggggtggataaggatagacgtgtccaggtgtccaccgttcgttcgc
cctgggagacgtcccagaggaacaggggaggaccagggacgcctggtgga
cccctttggaggccaagagaccatctggggttgcgagatcgtgggttcga
gtcccacctcgcgccttgttgcgagaccgtgggttcgagtccccacctcg
tgttttgtacgagatcgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_5102624_5103971
seq2: B6Ng01-248B05.b_43_1144 (reverse)

seq1  ATCTCTGTGTATAGTATGGTGACACTACTACACTACAGAGTGATTTTTTA  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCTCAGGATAAGTGATGTAGGGGAATTAATATGGTTCCATATTCAACTGA  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTATGTTCAGCAATAATGTATGTTCAGGTACTGGTTGTACTGTTACAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  GGCTATATTATTTAAAACTTACAAATATTAAGAAACTGTTTAGTGTAGGT  200
                                                        
seq2  --------------------------------------------------  0

seq1  CAAAGCCTCAGGGTCATTTCCTGAAGTCTGGTAGTTCCTGGAACTCTCAT  250
                                                        
seq2  -------------------------------------------------A  1

seq1  TCTCTGTGTATGTT-CAGATCAATGGTGTAGAAGCCT-AAAAAAATCCTG  298
      |||||||||||||| ||||||| |||||||||||||| ||||||||||||
seq2  TCTCTGTGTATGTTCCAGATCATTGGTGTAGAAGCCTAAAAAAAATCCTG  51

seq1  ATTACTATATTGTGGTTCACAGATTAACTAAATGTCAGTAGCATTTACTA  348
      | ||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  A-TACTATA-TGTGGTTCACAGATTAACTAAATGTCAGTAGCATTTACTA  99

seq1  TTCTGTG--TTTTTTCACAGGGCTTTTC-TTTAAGACTAGTAGTATATGT  395
       ||||||  ||||||||||||||||||| |||||||||||||||||||||
seq2  -TCTGTGGTTTTTTTCACAGGGCTTTTCTTTTAAGACTAGTAGTATATGT  148

seq1  TGCTA-GGCAGTAATTCTATGTCCTTATGCAAAAATGAATAATGCATGTT  444
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGGCAGTAATTCTATGTCCTTATGCAAAAATGAATAATGCATGTT  198

seq1  CTTTGTTTTCTAAGGCATCAGAAAAATAGCACCAGTTTGGTGTTGGTGGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTTCTAAGGCATCAGAAAAATAGCACCAGTTTGGTGTTGGTGGC  248

seq1  TCGTTCTCAGCTGCTCACCAGGCTCCCAGGGACCAACAGAGCTGATGGCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTCTCAGCTGCTCACCAGGCTCCCAGGGACCAACAGAGCTGATGGCA  298

seq1  GGTTGTCCAGCATTTAATGAACACTAGCTGGAAACATTCAGAGTCCAATA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTCCAGCATTTAATGAACACTAGCTGGAAACATTCAGAGTCCAATA  348

seq1  GCCAAATGTCAGGCAGAGACCAGAGAGTCTCATGGAAGAGTGGAAGAGTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATGTCAGGCAGAGACCAGAGAGTCTCATGGAAGAGTGGAAGAGTG  398

seq1  AGGGATAGAATTGTGGGGGTTGGAGGGGGAGGACACCATAAGAATACCTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATAGAATTGTGGGGGTTGGAGGGGGAGGACACCATAAGAATACCTA  448

seq1  CAGAGTAAACTAACTGGGGCCAATGGGGCTCATATTGACTAAACTGCCAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTAAACTAACTGGGGCCAATGGGGCTCATATTGACTAAACTGCCAA  498

seq1  TCAAAGAACATACATGGCTGGATCTAGGCCTCCATGAACATATGTAGCAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAACATACATGGCTGGATCTAGGCCTCCATGAACATATGTAGCAA  548

seq1  ATGTGCAGTTTGGTCTTAATGTGGGTCCCAAACATAATGTGGGAATAGGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCAGTTTGGTCTTAATGTGGGTCCCAAACATAATGTGGGAATAGGG  598

seq1  TCTGTCCCAAAATCTGTTGCCTGTATATGGGATAAGTTGTTCTTCCTGAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCCAAAATCTGTTGCCTGTATATGGGATAAGTTGTTCTTCCTGAC  648

seq1  TGCCTTGTCTGGCCTCAGTGGGAGAGGATGAACCTATCCTTACAGAGACT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGTCTGGCCTCAGTGGGAGAGGATGAACCTATCCTTACAGAGACT  698

seq1  TGCTGTGAACCAGCGTGGGAGATACCTAGTGGGGACCCACTTGCTTAGAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGAACCAGCGTGGGAGATACCTAGTGGGGACCCACTTGCTTAGAT  748

seq1  GAGAAGAGGCGGAGGCATGGGGGAAAATTGTGGAACGAGTGACTGGGAGC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAGGCGGAGGCATGGGGGAAAATTGTGGAACGAGTGACTGGGAGC  798

seq1  AGGGCAGTGATAGGGACGTAAAGTGATTAAGTAAAAACAAAACAAAACAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGTGATAGGGACGTAAAGTGATTAAGTAAAAACAAAACAAAACAG  848

seq1  AACAACAACCCTCAAACTCCTGCTCTAGTCCCAGTAATGTTTCTTATTTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACCCTCAAACTCCTGCTCTAGTCCCAGTAATGTTTCTTATTTC  898

seq1  TATTAGTTACCAGTCCTCCCTCCCACCCAGTGTTAGTTAAAACTGGCACA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTTACCAGTCCTCCCTCCCACCCAGTGTTAGTTAAAACTGGCACA  948

seq1  AGTTGTATTGGACAAATGTTAAAGTTAGATTACTCTCTTGAAAAAGAGAG  1244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTATTGGACAAATGTTAAAGTTAGATTACTCTCTTGAAAAAGAGAG  998

seq1  ACATTATTTTCTCCTTATTTTATAAAAAAATAAGCATAATTAAAATGACT  1294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATTTTCTCCTTATTTTATAAAAAAATAAGCATAATTAAAATGACT  1048

seq1  GCTGAAGAATGTTTCCTCTTAATGTCACCAGATTTAAAATGAATTTATGA  1344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGAATGTTTCCTCTTAATGTCACCAGATTTAAAATGAATTTATGA  1098

seq1  ATTC  1348
      ||||
seq2  ATTC  1102

seq1: chr8_4959254_4959776
seq2: B6Ng01-248B05.g_64_586

seq1  GAATTCTCGAAGCATGCTAAGCAGTAGTGAAGAATAAAAAAATACTGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGAAGCATGCTAAGCAGTAGTGAAGAATAAAAAAATACTGAAC  50

seq1  TCTTCCTCACCCCAGAGCCCGACCCCTCCCATCTAGAGATTGTTCCCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCACCCCAGAGCCCGACCCCTCCCATCTAGAGATTGTTCCCAGA  100

seq1  ACACTCCTGAACTCTTCACCCCAGAATGCATTCCTGAACTCCTCACCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCTGAACTCTTCACCCCAGAATGCATTCCTGAACTCCTCACCCTA  150

seq1  GAGTTCGAACCCTCCCAACTAAAATCTGTTCCAAGAACATTTTTTGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCGAACCCTCCCAACTAAAATCTGTTCCAAGAACATTTTTTGAGAT  200

seq1  AAGGGCCTCCTGGAACAACCTCAGAATGAACCGGGTACATTGCCAAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCCTCCTGGAACAACCTCAGAATGAACCGGGTACATTGCCAAATAA  250

seq1  TAGGACATGACCCCTTAGTTACGTAGAATTCCCTTGGCAGAACCCCTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACATGACCCCTTAGTTACGTAGAATTCCCTTGGCAGAACCCCTTGT  300

seq1  CCCTTGGCAGAACCCCTTAGTTATGCAAACTTGTACTTTCCCTGCCCCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGCAGAACCCCTTAGTTATGCAAACTTGTACTTTCCCTGCCCCGC  350

seq1  TCTCCCCCCTTGAGTTTTTCCTATATAAGCCTGTGAAAAATTTGGCTCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCCCTTGAGTTTTTCCTATATAAGCCTGTGAAAAATTTGGCTCGA  400

seq1  GGTCGATTCTCCTCTACAACATACTAGGTGCATGAGTTTCGACCCCAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGATTCTCCTCTACAACATACTAGGTGCATGAGTTTCGACCCCAGAG  450

seq1  CTCTGGTCCATGTGCTTTCTTGCTGTTACTTTATTAAATCTTGCCTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTCCATGTGCTTTCTTGCTGTTACTTTATTAAATCTTGCCTTCTA  500

seq1  CATTTTGAGTTCGGTCTCAGTGT  523
      |||||||||||||||||||||||
seq2  CATTTTGAGTTCGGTCTCAGTGT  523