BAC Information

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BAC

Clone NameB6Ng01-248G05
Chromosome8 (Build37)
Map Location 88,240,272 - 88,370,576
singlet/doubletdoublet
Overlap geneItfg1, LOC100040798, Phkb
Upstream geneNfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2, Neto2
Downstream geneLOC671665, LOC100040165, Abcc12, Lonp2, Siah1a, ENSMUSG00000074178, BC004022
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248G05.bB6Ng01-248G05.g
ACCGA056480GA056481
length9871,111
definitionB6Ng01-248G05.b B6Ng01-248G05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,369,946 - 88,370,576)(88,240,272 - 88,241,363)
sequence
gaattcagcagataacagaattgctgaagaaaacccaaaaaaaatgaaaa
atttcaaactgtcaaaaagttcagtggaaagcatcgtggacagaatgaag
ggagacagaacacagtaactaaaggattaggaagaggactcaatcatcct
ctcatgggaaatgatcagttgttaaatgcataagtggggaagcatgctct
gggataccatcaaagaactgaatctacaaatttgggcacagaaggaaaaa
aactggaagacaaagacatagaaaacactttcaataacattatagaggat
ggcttcctaactcttgacaaagagatgccttaaaaacacaagagactcac
agagaaataacaggaacagaaaagagattccccatgacatgcaatagtta
agacactaaagacaaaaaaatgaagaaaggatactgaaagctacaagaca
caagggccaggagacatgaaaaggcaggcccactagaggacagctgacta
cctattataactgtttaaagccaaaaagatatattctaagttctgaaaga
ttacagccagctgccagcctagaatgctatactcagcaaggttatcattt
atgagtgacagagcaataaaactttccatgataaaagcaaactaaaagaa
tatatgaccactaaggcagctctggagggaaaagaggaaggtgtaagtga
aacaagagaagaataaacacaccaaagaggccacaaggacaaataaatat
gagagcaggtgatcagaggcttagggaaaaacaacaaatcatcaacatga
caggaacacacatctttcaaaaacaactgaatattaacagtggtctcaat
tcctccctgagaagacagactaatacactgggattaagaaacaagatcta
tcatttttatgaatccaagttaacatcatacttccaatgatagagacaac
ccttggaataaaatgacagaaaaagggtattctatgc
gaattcactccaatgatcacaagcctgtccccagatctaagagactaata
actgtccctaagacttctaactggttgctgtgtgacaagtttttttttaa
tcttggggagttgccttgactgagaggcttcagcaccacaaactgtatct
ggaccctatgcaaaggtgcaaactgaaggtaaaacaaagaaaggaaagga
gacagacaatccacaggtgggatggctaggcaaaatgccatcactctcta
ggggggatactcacaaactccatgtgctgtggggttccctcctcctgcca
ctggcacaagggctgagggagaagtggtgagcagggtttgaaccaccaga
agaactttggagacagcttcagtgagacaagtgtactttattgcttgagg
ggtagggtagatgagggctctaaggggtatgggtggagaaggctgattgg
tcatgtgtgcaataagctagagcaggacctgtaagctgagtcatgcagca
cttgcatagagctctgcacatggtcatcctccaaacaaggtcaggcacct
gtgcgcagagacgttctcagccacagagagaaagggaagccccatgggca
aggggaatcctccacttagcgccaagctgggagagctatccagatatggt
ggaccgtgacctttatagcagtgctctccaacaacaggtgtttcttatta
tccttgtttgactgatgaagaaaccaaagcttgacaagacatgactaatt
aaaagtcataaagttagtgtgggctctgatgctagttacgtttgctcctt
tccaacacaacatgtaaaataaacacaaaaaaactctgttgaagctcagt
gtagtgaacactttttaaaaatcccctgctatatctagtaaatgatataa
aaagtttgagtttggtaatacagaattattggtcagcatattttaaattt
gtcactaacctttttatctatcgcactatttcctttacagatttcttgac
cccaaggtcttagaatttcacgcttttaccagctgccagatagaaaggca
tcacttggtgttttgtaaagttcaaggttgaatcctttgggcagcttgaa
ttcttgtgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_88369946_88370576
seq2: B6Ng01-248G05.b_46_676 (reverse)

seq1  TCATGGAAAGTTTTATTGCTCTGTCACTCATAAATGATAACCTTGCTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAAAGTTTTATTGCTCTGTCACTCATAAATGATAACCTTGCTGAG  50

seq1  TATAGCATTCTAGGCTGGCAGCTGGCTGTAATCTTTCAGAACTTAGAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCATTCTAGGCTGGCAGCTGGCTGTAATCTTTCAGAACTTAGAATA  100

seq1  TATCTTTTTGGCTTTAAACAGTTATAATAGGTAGTCAGCTGTCCTCTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTTGGCTTTAAACAGTTATAATAGGTAGTCAGCTGTCCTCTAGT  150

seq1  GGGCCTGCCTTTTCATGTCTCCTGGCCCTTGTGTCTTGTAGCTTTCAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGCCTTTTCATGTCTCCTGGCCCTTGTGTCTTGTAGCTTTCAGTA  200

seq1  TCCTTTCTTCATTTTTTTGTCTTTAGTGTCTTAACTATTGCATGTCATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTTCATTTTTTTGTCTTTAGTGTCTTAACTATTGCATGTCATGG  250

seq1  GGAATCTCTTTTCTGTTCCTGTTATTTCTCTGTGAGTCTCTTGTGTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTCTTTTCTGTTCCTGTTATTTCTCTGTGAGTCTCTTGTGTTTTT  300

seq1  AAGGCATCTCTTTGTCAAGAGTTAGGAAGCCATCCTCTATAATGTTATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATCTCTTTGTCAAGAGTTAGGAAGCCATCCTCTATAATGTTATTG  350

seq1  AAAGTGTTTTCTATGTCTTTGTCTTCCAGTTTTTTTCCTTCTGTGCCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTTTTCTATGTCTTTGTCTTCCAGTTTTTTTCCTTCTGTGCCCAA  400

seq1  ATTTGTAGATTCAGTTCTTTGATGGTATCCCAGAGCATGCTTCCCCACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAGATTCAGTTCTTTGATGGTATCCCAGAGCATGCTTCCCCACTT  450

seq1  ATGCATTTAACAACTGATCATTTCCCATGAGAGGATGATTGAGTCCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTAACAACTGATCATTTCCCATGAGAGGATGATTGAGTCCTCTT  500

seq1  CCTAATCCTTTAGTTACTGTGTTCTGTCTCCCTTCATTCTGTCCACGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATCCTTTAGTTACTGTGTTCTGTCTCCCTTCATTCTGTCCACGATG  550

seq1  CTTTCCACTGAACTTTTTGACAGTTTGAAATTTTTCATTTTTTTTGGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCACTGAACTTTTTGACAGTTTGAAATTTTTCATTTTTTTTGGGTT  600

seq1  TTCTTCAGCAATTCTGTTATCTGCTGAATTC  631
      |||||||||||||||||||||||||||||||
seq2  TTCTTCAGCAATTCTGTTATCTGCTGAATTC  631

seq1: chr8_88240272_88241363
seq2: B6Ng01-248G05.g_65_1175

seq1  GAATTCACTCCAATGATCACAAGCCTGTCCCCAGATCTAAGAGACTAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCAATGATCACAAGCCTGTCCCCAGATCTAAGAGACTAATA  50

seq1  ACTGTCCCTAAGACTTCTAACTGGTTGCTGTGTGACAAGTTTTTTTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCCTAAGACTTCTAACTGGTTGCTGTGTGACAAGTTTTTTTTTAA  100

seq1  TCTTGGGGAGTTGCCTTGACTGAGAGGCTTCAGCACCACAAACTGTATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGGAGTTGCCTTGACTGAGAGGCTTCAGCACCACAAACTGTATCT  150

seq1  GGACCCTATGCAAAGGTGCAAACTGAAGGTAAAACAAAGAAAGGAAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCTATGCAAAGGTGCAAACTGAAGGTAAAACAAAGAAAGGAAAGGA  200

seq1  GACAGACAATCCACAGGTGGGATGGCTAGGCAAAATGCCATCACTCTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACAATCCACAGGTGGGATGGCTAGGCAAAATGCCATCACTCTCTA  250

seq1  GGGGGGATACTCACAAACTCCATGTGCTGTGGGGTTCCCTCCTCCTGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGATACTCACAAACTCCATGTGCTGTGGGGTTCCCTCCTCCTGCCA  300

seq1  CTGGCACAAGGGCTGAGGGAGAAGTGGTGAGCAGGGTTTGAACCACCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACAAGGGCTGAGGGAGAAGTGGTGAGCAGGGTTTGAACCACCAGA  350

seq1  AGAACTTTGGAGACAGCTTCAGTGAGACAAGTGTACTTTATTGCTTGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTTGGAGACAGCTTCAGTGAGACAAGTGTACTTTATTGCTTGAGG  400

seq1  GGTAGGGTAGATGAGGGCTCTAAGGGGTATGGGTGGAGAAGGCTGATTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGTAGATGAGGGCTCTAAGGGGTATGGGTGGAGAAGGCTGATTGG  450

seq1  TCATGTGTGCAATAAGCTAGAGCAGGACCTGTAAGCTGAGTCATGCAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGTGCAATAAGCTAGAGCAGGACCTGTAAGCTGAGTCATGCAGCA  500

seq1  CTTGCATAGAGCTCTGCACATGGTCATCCTCCAAACAAGGTCAGGCACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATAGAGCTCTGCACATGGTCATCCTCCAAACAAGGTCAGGCACCT  550

seq1  GTGCGCAGAGACGTTCTCAGCCACAGAGAGAAAGGGAAGCCCCATGGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGCAGAGACGTTCTCAGCCACAGAGAGAAAGGGAAGCCCCATGGGCA  600

seq1  AGGGGAATCCTCCACTTAGCGCCAAGCTGGGAGAGCTATCCAGATATGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAATCCTCCACTTAGCGCCAAGCTGGGAGAGCTATCCAGATATGGT  650

seq1  GGACCGTGACCTTTATAGCAGTGCTCTCCAACAACAGGTGTTTCTTATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCGTGACCTTTATAGCAGTGCTCTCCAACAACAGGTGTTTCTTATTA  700

seq1  TCCTTGTTTGACTGATGAAGAAACCAAAGCTTGACAAGACATGACTAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTTTGACTGATGAAGAAACCAAAGCTTGACAAGACATGACTAATT  750

seq1  AAAAGTCATAAAGTTAGTGTGGGCTCTGATGCTAGTTACGTTTGCTCC-T  799
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAAAGTCATAAAGTTAGTGTGGGCTCTGATGCTAGTTACGTTTGCTCCTT  800

seq1  TCCAACACAACATGTAAAATTAACAC-AAAAAACTCTGTTGAAGCTCAGT  848
      |||||||||||||||||||| ||||| |||||||||||||||||||||||
seq2  TCCAACACAACATGTAAAATAAACACAAAAAAACTCTGTTGAAGCTCAGT  850

seq1  GTAGTG-ACACTTTTTAAAAATCCCCTGCTATATCTAGTAAATGATATAA  897
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGAACACTTTTTAAAAATCCCCTGCTATATCTAGTAAATGATATAA  900

seq1  AA--GTTGAGTTTGGTAATACAGAAATATT-GTCAGCATATTTTAA--TT  942
      ||   |||||||||||||||||||| |||| |||||||||||||||  ||
seq2  AAAGTTTGAGTTTGGTAATACAGAATTATTGGTCAGCATATTTTAAATTT  950

seq1  GTCACTAACC-TTTTATCTATCGCACTATT--CCTTACAGATT--CTGAC  987
      |||||||||| |||||||||||||||||||  | |||||||||   ||||
seq2  GTCACTAACCTTTTTATCTATCGCACTATTTCCTTTACAGATTTCTTGAC  1000

seq1  CCCAA-GTTTTAGAA-TTCACG-TTTTACCAGCTGCCAGATAGGAA-GCA  1033
      ||||| || |||||| |||||| |||||||||||||||||||| || |||
seq2  CCCAAGGTCTTAGAATTTCACGCTTTTACCAGCTGCCAGATAGAAAGGCA  1050

seq1  TCACT--GTG-TTTGTAAAGGTCAGGGTTGATCCTTTTGGGCAGCTTGAG  1080
      |||||  ||| ||||||||| ||| ||||||  | |||||||||||||| 
seq2  TCACTTGGTGTTTTGTAAAGTTCAAGGTTGAATCCTTTGGGCAGCTTGAA  1100

seq1  TCCTGTGTGTGA  1092
      | || |||||||
seq2  TTCT-TGTGTGA  1111