BAC Information

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BAC

Clone NameB6Ng01-248M17
Chromosome8 (Build37)
Map Location 43,362,531 - 43,503,009
singlet/doubletdoublet
Overlap genenone
Upstream genePcm1, Asah1, Frg1, LOC100039376, Gm1815, LOC671994, Zfp353, EG620772
Downstream geneLOC628212, Triml1, LOC622082, EG622117, LOC100039417, Zfp42
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248M17.bB6Ng01-248M17.g
ACCGA056779GA056780
length1,1891,113
definitionB6Ng01-248M17.b B6Ng01-248M17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,501,826 - 43,503,009)(43,362,531 - 43,363,643)
sequence
gaattcaatgcagatgtaacaacatggttgtctgaagaagaagaaaaaaa
atacctgatttcatcagtgtaacacaaaaatgaagtcaacatatcaccac
acagagaatctgtatttttaagtgaaaagcataatattgttcagaaatga
aagagcctctcacagaaggacagaagcaaatgctatgtgcacatgtaatt
cccagtgtgcctcagggcttctgggtcaatcctgaagaagcaaggtctct
gtgttgtcattttcaatagcacttacacactgtgtaggcctaacctttga
agatttatgtacttgataaaaatgagaaaaatatactttagagtacaagt
tctatttttatttcatgagaatagagcagacaagtattaaaccattattg
gcctctatgctttagaattaccaaaaatggtctccctttactcgcctttg
cttgactctgagtgctcttagttgaagtaatgtggatttgccttatcaaa
tccaaagtctcatactcccttaatttgtcataagcattttgaatagcttc
caaccaaatagaaaaggtaacaatgtatggtgaaaatgagccaaggtaag
gaccacaggaagccagcttctccagagcttctccagatagcaactctgtc
ctcaaatgcaaaacagaccttggaaatggcataatctttgtttttgtttt
gttttgttttgttttgtttttggctgccaaagatgaggttttatctttca
tccacttgaaacgtaggtcattgagttctgtgatttttcccatgaaacac
ctttataagacttccaagaatacccatcatagttctctaccagtgagtca
ctcctggcttctaatgggaatatgtctttggtgaagcaattatcatcact
gattctacagagtgggaaatgatgcagattgactggggcatctatgagag
ccatcgcttgtctccagacttggctggaaagcctatcctaatatccaaag
taatttagattatgggaaatgtcaagaaggttcagcattctgcctcaaag
aaaaattttagaagagtactttccagtatttgtctgtctacattcacaaa
ttgtactcttaccaggaatgcagagtttcagttaacaaatcctccctcga
tcatttataccgtaacctggctcatcagaagactgggag

gaattctttctttcagctttatagtttaaacctcctgatttctaaatgag
agaaaactcttcaatgttaaattcaccaatatttatatttttgttttata
tggaggccaccttaatacctcatgtgttgttttcacaagtgtggatatta
acactaactttataaaaatattagtatcagtagagcagcctttttctttt
atattaagttttataccatttcaaacaatttttaaatttaagtatatttt
gatcatattcttctcttcctccaagtcattccaggcccctctccactccc
tacccacaaaattttaagttcttcatccaaaataaacagaacataaataa
ccacaatgctccccaaaacaagacaacaaaataaaattattaacaagaca
tgtttaaataagtaggaatcaaacaaacgaaaaacaaacaaataaataca
cacacaagagaagacaccatagaaccaaacaaataaaccatgtggagtct
attgtatgctggttgaccacttgtgaacatgagtccttcccagagtggtt
gatatacccaatgtcattccatttgagaaaactgatattttgctcctttc
ccagcagatataaatggcagttccacttttaaccgttgcctcagtgttta
gggttttattcacttattcaattctttagtgataataaaatatcataaaa
taaaacaaatattacattgaagttggagaagaaccaaagagaaggcacaa
gaatctgagacccactacgaaatttcataaaatcattaaagtagaagcca
tactatgtaagcgaggacctggtgcaattccatgcaggccctgtgcacac
tcctttagtgtctgtaagttcataggaactctgctcatgttgactttgaa
ggacttctttttcttagtgtcctctatcctttctggctcttaaccactgt
tctgcctcatctccatggggttcctgatctctgagggaggaaggatttga
tgagaaataccattcaggctgatggttccaaggtttctaactttgtgcat
taattgtctgcctgtggataatccaatggtttggtccaatctgaatgcaa
gaggaagctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_43501826_43503009
seq2: B6Ng01-248M17.b_51_1239 (reverse)

seq1  CTCCCAGTC-TCTGATGAGCAAG--TATAGTATAAAATGATCTGAGGAGA  47
      ||||||||| |||||||||| ||  ||  |||| ||||||||   |||| 
seq2  CTCCCAGTCTTCTGATGAGCCAGGTTACGGTAT-AAATGATCGAGGGAGG  49

seq1  TTTTGTT-ACTGAAACTCTGCCTTCTTGGTAAGGAGTACATTTTGTGATG  96
       |||||| ||||||||||||| ||| |||||| ||||||| |||||||  
seq2  ATTTGTTAACTGAAACTCTGCATTCCTGGTAA-GAGTACAATTTGTGAAT  98

seq1  GCCAGACAGAC-AATACTGGAAAGGTACTTCTCTAAAA-TTTTCTTTGAG  144
      |  |||||||| ||||||||||| |||||  ||||||| |||||||||||
seq2  G-TAGACAGACAAATACTGGAAA-GTACTCTTCTAAAATTTTTCTTTGAG  146

seq1  GCAG-ATGCTGAA-CTTCTTGACATTTCCCATAATCTAAATTACTTTGGA  192
      |||| |||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCAGAATGCTGAACCTTCTTGACATTTCCCATAATCTAAATTACTTTGGA  196

seq1  TATTAGGGATAGGCTTTCCAGCC-AGTCTGGAGACAAGCGATGGCTCTCA  241
      ||||| ||||||||||||||||| ||||||||||||||||||||||||||
seq2  TATTA-GGATAGGCTTTCCAGCCAAGTCTGGAGACAAGCGATGGCTCTCA  245

seq1  TAGATGCCCCAGTCAATCTGCATCATTTCCCACTCTGTAGAATCAGTGAT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGCCCCAGTCAATCTGCATCATTTCCCACTCTGTAGAATCAGTGAT  295

seq1  GATAATTGCTTCACCAAAGACATATT-CCATTAGAAGCCAGGAGTGACTC  340
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GATAATTGCTTCACCAAAGACATATTCCCATTAGAAGCCAGGAGTGACTC  345

seq1  ACTGGTAGAGAACTATGATGGGTATTCTTGGAAGTCTTATAAAGGTGTTT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTAGAGAACTATGATGGGTATTCTTGGAAGTCTTATAAAGGTGTTT  395

seq1  CATGGGAAAAATCACAGAACTCAATGACCTACGTTTCAAGTGGATGAAAG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAAAAATCACAGAACTCAATGACCTACGTTTCAAGTGGATGAAAG  445

seq1  ATAAAACCTCATCTTTGGCAGCCAAAAACAAAACAAAACAAAACAAAACA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACCTCATCTTTGGCAGCCAAAAACAAAACAAAACAAAACAAAACA  495

seq1  AAAACAAAGATTATGCCATTTCCAAGGTCTGTTTTGCATTTGAGGACAGA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAGATTATGCCATTTCCAAGGTCTGTTTTGCATTTGAGGACAGA  545

seq1  GTTGCTATCTGGAGAAGCTCTGGAGAAGCTGGCTTCCTGTGGTCCTTACC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTATCTGGAGAAGCTCTGGAGAAGCTGGCTTCCTGTGGTCCTTACC  595

seq1  TTGGCTCATTTTCACCATACATTGTTACCTTTTCTATTTGGTTGGAAGCT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCATTTTCACCATACATTGTTACCTTTTCTATTTGGTTGGAAGCT  645

seq1  ATTCAAAATGCTTATGACAAATTAAGGGAGTATGAGACTTTGGATTTGAT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAATGCTTATGACAAATTAAGGGAGTATGAGACTTTGGATTTGAT  695

seq1  AAGGCAAATCCACATTACTTCAACTAAGAGCACTCAGAGTCAAGCAAAGG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAATCCACATTACTTCAACTAAGAGCACTCAGAGTCAAGCAAAGG  745

seq1  CGAGTAAAGGGAGACCATTTTTGGTAATTCTAAAGCATAGAGGCCAATAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTAAAGGGAGACCATTTTTGGTAATTCTAAAGCATAGAGGCCAATAA  795

seq1  TGGTTTAATACTTGTCTGCTCTATTCTCATGAAATAAAAATAGAACTTGT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTAATACTTGTCTGCTCTATTCTCATGAAATAAAAATAGAACTTGT  845

seq1  ACTCTAAAGTATATTTTTCTCATTTTTATCAAGTACATAAATCTTCAAAG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAAAGTATATTTTTCTCATTTTTATCAAGTACATAAATCTTCAAAG  895

seq1  GTTAGGCCTACACAGTGTGTAAGTGCTATTGAAAATGACAACACAGAGAC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGCCTACACAGTGTGTAAGTGCTATTGAAAATGACAACACAGAGAC  945

seq1  CTTGCTTCTTCAGGATTGACCCAGAAGCCCTGAGGCACACTGGGAATTAC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTCTTCAGGATTGACCCAGAAGCCCTGAGGCACACTGGGAATTAC  995

seq1  ATGTGCACATAGCATTTGCTTCTGTCCTTCTGTGAGAGGCTCTTTCATTT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCACATAGCATTTGCTTCTGTCCTTCTGTGAGAGGCTCTTTCATTT  1045

seq1  CTGAACAATATTATGCTTTTCACTTAAAAATACAGATTCTCTGTGTGGTG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAATATTATGCTTTTCACTTAAAAATACAGATTCTCTGTGTGGTG  1095

seq1  ATATGTTGACTTCATTTTTGTGTTACACTGATGAAATCAGGTATTTTTTT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTGACTTCATTTTTGTGTTACACTGATGAAATCAGGTATTTTTTT  1145

seq1  TCTTCTTCTTCAGACAACCATGTTGTTACATCTGCATTGAATTC  1184
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTTCAGACAACCATGTTGTTACATCTGCATTGAATTC  1189


seq1: chr8_43362531_43363643
seq2: B6Ng01-248M17.g_66_1178

seq1  GAATTCTTTCTTTCAGCTTTATAGTTTAAACCTCCTGATTTCTAAATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTTCAGCTTTATAGTTTAAACCTCCTGATTTCTAAATGAG  50

seq1  AGAAAACTCTTCAATGTTAAATTCACCAATATTTATATTTTTGTTTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACTCTTCAATGTTAAATTCACCAATATTTATATTTTTGTTTTATA  100

seq1  TGGAGGCCACCTTAATACCTCATGTGTTGTTTTCACAAGTGTGGATATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCCACCTTAATACCTCATGTGTTGTTTTCACAAGTGTGGATATTA  150

seq1  ACACTAACTTTATAAAAATATTAGTATCAGTAGAGCAGCCTTTTTCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAACTTTATAAAAATATTAGTATCAGTAGAGCAGCCTTTTTCTTTT  200

seq1  ATATTAAGTTTTATACCATTTCAAACAATTTTTAAATTTAAGTATATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAGTTTTATACCATTTCAAACAATTTTTAAATTTAAGTATATTTT  250

seq1  GATCATATTCTTCTCTTCCTCCAAGTCATTCCAGGCCCCTCTCCACTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATATTCTTCTCTTCCTCCAAGTCATTCCAGGCCCCTCTCCACTCCC  300

seq1  TACCCACAAAATTTTAAGTTCTTCATCCAAAATAAACAGAACATAAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACAAAATTTTAAGTTCTTCATCCAAAATAAACAGAACATAAATAA  350

seq1  CCACAATGCTCCCCAAAACAAGACAACAAAATAAAATTATTAACAAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATGCTCCCCAAAACAAGACAACAAAATAAAATTATTAACAAGACA  400

seq1  TGTTTAAATAAGTAGGAATCAAACAAACGAAAAACAAACAAATAAATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAATAAGTAGGAATCAAACAAACGAAAAACAAACAAATAAATACA  450

seq1  CACACAAGAGAAGACACCATAGAACCAAACAAATAAACCATGTGGAGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAGAGAAGACACCATAGAACCAAACAAATAAACCATGTGGAGTCT  500

seq1  ATTGTATGCTGGTTGACCACTTGTGAACATGAGTCCTTCCCAGAGTGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATGCTGGTTGACCACTTGTGAACATGAGTCCTTCCCAGAGTGGTT  550

seq1  GATATACCCAATGTCATTCCATTTGAGAAAACTGATATTTTGCTCCTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATACCCAATGTCATTCCATTTGAGAAAACTGATATTTTGCTCCTTTC  600

seq1  CCAGCAGATATAAATGGCAGTTCCACTTTTAACCGTTGCCTCAGTGTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGATATAAATGGCAGTTCCACTTTTAACCGTTGCCTCAGTGTTTA  650

seq1  GGGTTTTATTCACTTATTCAATTCTTTAGTGATAATAAAATATCATAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTATTCACTTATTCAATTCTTTAGTGATAATAAAATATCATAAAA  700

seq1  TAAAACAAATATTACATTGAAGTTGGAGAAGAACCAAAGAGAAGGCACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAAATATTACATTGAAGTTGGAGAAGAACCAAAGAGAAGGCACAA  750

seq1  GAATCTGAGACCCACTACGAAATTTCATAAAATCATTAAAGTAGAAGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGAGACCCACTACGAAATTTCATAAAATCATTAAAGTAGAAGCCA  800

seq1  TACTATGTAAGCGAGGACCTGGTGCAATTCCATGCAGGCCCTGTGCACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGTAAGCGAGGACCTGGTGCAATTCCATGCAGGCCCTGTGCACAC  850

seq1  TCCTTTAGTGTCTGTAAGTTCATAGGAACTCTGCTCATGTTGACTTTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAGTGTCTGTAAGTTCATAGGAACTCTGCTCATGTTGACTTTGAA  900

seq1  GGACTTC-TTTTCTTAGTGTCCTCTATCCTTTCTGGCTCTTAA-CACTGT  948
      ||||||| ||||||||||||||||||||||||||||||||||| ||||| 
seq2  GGACTTCTTTTTCTTAGTGTCCTCTATCCTTTCTGGCTCTTAACCACTG-  949

seq1  TTCTGCCTCATCTTCCATGGGGTTCCCTGATCTCTGAGGGGAGGGAGGGA  998
      |||||||||||| ||||||||||| |||||||||||||||   ||| |||
seq2  TTCTGCCTCATC-TCCATGGGGTT-CCTGATCTCTGAGGG--AGGAAGGA  995

seq1  TTTGATGGAGACATACCATTCAGGGCTGAGTGTTCCAAGGTTTCTAACTT  1048
      |||||| |||| |||||||||| ||||||  |||||||||||||||||||
seq2  TTTGAT-GAGAAATACCATTCA-GGCTGATGGTTCCAAGGTTTCTAACTT  1043

seq1  TGTGCAT--AATGTCTGGCTGTGGAT-ATCCA--TGTTTGGTCCCATCTG  1093
      |||||||  | |||||| |||||||| |||||   ||||||||| |||||
seq2  TGTGCATTAATTGTCTGCCTGTGGATAATCCAATGGTTTGGTCCAATCTG  1093

seq1  -ATGCAGGGGGAAGCTTCTCT  1113
       ||||| | |||||| |||||
seq2  AATGCAAGAGGAAGC-TCTCT  1113


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