BAC Information

Click to search

BAC

Clone NameB6Ng01-249M13
Chromosome8 (Build37)
Map Location 104,106,707 - 104,107,790
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042092, LOC384895
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249M13.bB6Ng01-249M13.g
ACCGA057513GA057514
length1911,076
definitionB6Ng01-249M13.b B6Ng01-249M13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
attctttcgtgaaagtgcggtagaattctgcactaaaaccatcttgccct
aagcttatttgtggatgggggggttgggggtttgttatgggagcttacat
ttatttaggggttatggggctgtgtaaatgtttatctgatcttgttttac
ttggtaaaattgtatgaatctagaatatctattttgttagc

gaattcaaagagcttcagagatattggaactagaatatgtagccatgaat
gtttgccaagggtgtctttctgggagcaagatggcagaactaggctggag
aactagaaaaaaatcttgttgcttctgctgccacagaatcaggatgcagg
gacagagttgagcttcggaggtgaagagctgggctttggatgctgttagg
tatgaagataaacattgggcctaaatgaactaattagatgattcctggat
gccagctctattagacaaatgggcagactggcatattgcattttgagtaa
atcacatccaagttaaagcccctgggacagttgctagttctgtgactaac
attcgcataaacatactcatttgatgggcagatgagaaatgagtggagac
attgccttcacagtgttggagcctccctttgatgggagtgactttgagga
cagttgtgctctcctgacagtgtgcctgataagatctcctacctagtttt
tctaatacattttaatgcacccatgtccttctataatccaacttatttgg
ataagtttattgggttctactcttcctaagttttagaaatatgctcggcc
aggcttgcctcataggtactgttgaataaatatttccattaacatgtcca
ccgaaatgaagactcatttcccatcctcaaaactgagttgaagcatcttg
taaaatgacgtctgtctagacaaggccatctaaaaaccattgtcttatat
aatatgaaataattagaactccacagcagcactttttgagttacattctc
attgttcatgatttcagctctgtttggtaaagagtctgaagacagcctta
tcattgcaaacacctaaagatcaacctggttctcagaagatgaatacttc
agtccagtgaatagacctctcacctcatgataattgccctcttgtggtct
gtctgtgatgttcaggaagcaagatgattcatatgcctacttaggactca
atgtcttttagaaaagtagtttgtagtgcatttgtaaatattttatgagt
actggctctttggacagagaccagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_104106707_104107790
seq2: B6Ng01-249M13.g_67_1142 (reverse)

seq1  ATCTGGTCTCTGTCCAAAGAGCCAGTTACTTCATAAATATTTTACAAATG  50
      ||||||||||||||||||||||||| ||| |||||||   ||||||||||
seq2  ATCTGGTCTCTGTCCAAAGAGCCAG-TAC-TCATAAAATATTTACAAATG  48

seq1  CACTTACAAACTACTTTTTCTAAAAGACATTGAGTCCTAAGTTAGGCATA  100
      ||| |||||||||| |||||||||||||||||||||||||| ||||||||
seq2  CAC-TACAAACTAC-TTTTCTAAAAGACATTGAGTCCTAAG-TAGGCATA  95

seq1  TGAATCATCTTGCTTTCCTGAACATCACAGACAGACCACAAGAGGGCAAT  150
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGAATCATCTTGC-TTCCTGAACATCACAGACAGACCACAAGAGGGCAAT  144

seq1  TATTCATGAGGTGAGAGGTCTATTCACTGGACTGAAGTATTCATCTTCTG  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TA-TCATGAGGTGAGAGGTCTATTCACTGGACTGAAGTATTCATCTTCTG  193

seq1  AGAACCAGGTTGATCTTTTAGGTGTTTGCAATGATAAGGCTGTCTTCAGA  250
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGAACCAGGTTGATC-TTTAGGTGTTTGCAATGATAAGGCTGTCTTCAGA  242

seq1  CTCTTTACCAAACAGAGCTGAAATCATGAACAATGAGAATGTAACTCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTACCAAACAGAGCTGAAATCATGAACAATGAGAATGTAACTCAAA  292

seq1  AAGTGCTGCTGTGGAGTTCTAATTATTTCATATTATATAAGACAATGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGCTGTGGAGTTCTAATTATTTCATATTATATAAGACAATGGTT  342

seq1  TTTAGATGGCCTTGTCTAGACAGACGTCATTTTACAAGATGCTTCAACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATGGCCTTGTCTAGACAGACGTCATTTTACAAGATGCTTCAACTC  392

seq1  AGTTTTGAGGATGGGAAATGAGTCTTCATTTCGGTGGACATGTTAATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGAGGATGGGAAATGAGTCTTCATTTCGGTGGACATGTTAATGGA  442

seq1  AATATTTATTCAACAGTACCTATGAGGCAAGCCTGGCCGAGCATATTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTATTCAACAGTACCTATGAGGCAAGCCTGGCCGAGCATATTTCT  492

seq1  AAAACTTAGGAAGAGTAGAACCCAATAAACTTATCCAAATAAGTTGGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTAGGAAGAGTAGAACCCAATAAACTTATCCAAATAAGTTGGATT  542

seq1  ATAGAAGGACATGGGTGCATTAAAATGTATTAGAAAAACTAGGTAGGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGGACATGGGTGCATTAAAATGTATTAGAAAAACTAGGTAGGAGA  592

seq1  TCTTATCAGGCACACTGTCAGGAGAGCACAACTGTCCTCAAAGTCACTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCAGGCACACTGTCAGGAGAGCACAACTGTCCTCAAAGTCACTCC  642

seq1  CATCAAAGGGAGGCTCCAACACTGTGAAGGCAATGTCTCCACTCATTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAGGGAGGCTCCAACACTGTGAAGGCAATGTCTCCACTCATTTCT  692

seq1  CATCTGCCCATCAAATGAGTATGTTTATGCGAATGTTAGTCACAGAACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCCCATCAAATGAGTATGTTTATGCGAATGTTAGTCACAGAACTA  742

seq1  GCAACTGTCCCAGGGGCTTTAACTTGGATGTGATTTACTCAAAATGCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGTCCCAGGGGCTTTAACTTGGATGTGATTTACTCAAAATGCAAT  792

seq1  ATGCCAGTCTGCCCATTTGTCTAATAGAGCTGGCATCCAGGAATCATCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGTCTGCCCATTTGTCTAATAGAGCTGGCATCCAGGAATCATCTA  842

seq1  ATTAGTTCATTTAGGCCCAATGTTTATCTTCATACCTAACAGCATCCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTCATTTAGGCCCAATGTTTATCTTCATACCTAACAGCATCCAAA  892

seq1  GCCCAGCTCTTCACCTCCGAAGCTCAACTCTGTCCCTGCATCCTGATTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCTCTTCACCTCCGAAGCTCAACTCTGTCCCTGCATCCTGATTCT  942

seq1  GTGGCAGCAGAAGCAACAAGATTTTTTTCTAGTTCTCCAGCCTAGTTCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGCAGAAGCAACAAGATTTTTTTCTAGTTCTCCAGCCTAGTTCTG  992

seq1  CCATCTTGCTCCCAGAAAGACACCCTTGGCAAACATTCATGGCTACATAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTGCTCCCAGAAAGACACCCTTGGCAAACATTCATGGCTACATAT  1042

seq1  TCTAGTTCCAATATCTCTGAAGCTCTTTGAATTC  1084
      ||||||||||||||||||||||||||||||||||
seq2  TCTAGTTCCAATATCTCTGAAGCTCTTTGAATTC  1076


| Home | SequenceCutter | Blast | Download |