BAC Information

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BAC

Clone NameB6Ng01-249P17
Chromosome8 (Build37)
Map Location 19,976,178 - 19,985,472
singlet/doubletdoublet
Overlap geneEG665822
Upstream geneDefb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730, 4930467E23Rik, LOC100041567, LOC547150, LOC100040599
Downstream gene6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249P17.bB6Ng01-249P17.g
ACCGA057659GA057660
length1561,031
definitionB6Ng01-249P17.b B6Ng01-249P17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,985,317 - 19,985,472)(19,976,178 - 19,977,205)
sequence
cagaaatttctccctctctaaggtgactctgaaagcctgggttgactagc
aacattggcaaatcctgaaggcctaccaggctttggcgccagggtcccag
gaagtgagtgactcttgccttgggctgcagtagaattgttgggggtgggg
tggggt
gaattctcagctgtaaaagaatccagatgttctaagatgatttggggggg
atgccaaaaggatgccagatttttacaaagacctgccaagtcttgatgtg
tgctccttaggaaccattctggaagagatgctgggaagtgcacccccccg
ccactccccctccacccccccaagcaagatattcgtgagaaagggaggaa
gacagagttgggtggacagaggagctgagcctcaatgttgtagccactga
ggtctaagcctgttctacaggagctggggaggctccaaactgtgaggagg
gggtccttagtaccacctgtgtcagctttactcactacaggctctcatct
aagacagtagttggagttttaacacagctcctcctgttgtgaggactctc
aaccataaaattatcttgttgcggttctctcgacagctgtccctctttat
aagttggcactccgtaaggatgaagccatgttcagctccagtgccaagac
tgtgaagccaaatggggagaagctcaatgagttccaagtctggcatctct
caggtgctgctcgagctggagatgaacgcagatgtcaaggctctgctgca
ggaagtcaacatcaccacaaccaaggaaattgaagttggtggtggtcgga
aagctaccataatttttgtaccagttcctcagctttaagtcttttccaga
aaaattcatgtcagctagttcgtgaattggagaaaaaattcagttgggaa
gcaagtagtgttcattgctcagaggaggattctgcccaagccaacctgga
aaatccgtatgaaaaataagcagaagcgccccagaaaccacaccctgaca
gtagtgcatgacagcagacttggtcttcccaagtgaaattgtgggtagga
gatctgtgttgaaactgggatggcagccggctcattaaagttcattagat
caaagcacagcggaaccacttaggacacaaggtggaacttttttctggtg
tgtaacaagaagcccaacaggcaagggatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_19985317_19985472
seq2: B6Ng01-249P17.b_51_206 (reverse)

seq1  ACCCCACCCCACCCCCAACAATTCTACTACAGCCCAAGGCAAGAGTCACT  50
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACCCCACCCCACCCCCAACAATTCTACTGCAGCCCAAGGCAAGAGTCACT  50

seq1  CACTTCCTGGGACCCTGGCGCCAAAGCCTGGTAGGCCTTCAGGATTTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTGGGACCCTGGCGCCAAAGCCTGGTAGGCCTTCAGGATTTGCC  100

seq1  AATGTTGCTAGTCAACCCAGGCTTTCAGAGTCACCTTAGAGAGGGAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGCTAGTCAACCCAGGCTTTCAGAGTCACCTTAGAGAGGGAGAAA  150

seq1  TTTCTG  156
      ||||||
seq2  TTTCTG  156

seq1: chr8_19976178_19977205
seq2: B6Ng01-249P17.g_70_1100

seq1  GAATTCTCAGCTGTAAAAGAATCCAGATGTTCTAAGATGATTTGGGGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTGTAAAAGAATCCAGATGTTCTAAGATGATTTGGGGGGG  50

seq1  ATGCCAAAAGGATGCCAGATTTTTACAAAGACCTGCCAAGTCTTGATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAAAAGGATGCCAGATTTTTACAAAGACCTGCCAAGTCTTGATGTG  100

seq1  TGCTCCTTAGGAACCATTCTGGAAGAGATGCTGGGAAGTGCACCCCCCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTTAGGAACCATTCTGGAAGAGATGCTGGGAAGTGCACCCCCCCG  150

seq1  CCACTCCCCCTCCACCCCCTCCCCCAAGCAAGATATTCGTGAGAAAGGGA  200
      ||||||||||||||||    ||||||||||||||||||||||||||||||
seq2  CCACTCCCCCTCCACC----CCCCCAAGCAAGATATTCGTGAGAAAGGGA  196

seq1  GGAAGACAGAGTTGGGTGGACAGAGGAGCTGAGCCTCAATGTTGTAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACAGAGTTGGGTGGACAGAGGAGCTGAGCCTCAATGTTGTAGCCA  246

seq1  CTGAGGTCTAAGCCAGTTCTACAGGAGCTGGGGAGGCTCCAAACTGTGAG  300
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTGAGGTCTAAGCCTGTTCTACAGGAGCTGGGGAGGCTCCAAACTGTGAG  296

seq1  GAGGGGGTCCTTAGTACCACCTGTGTCAGCTTTACTCACTACAGGCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGTCCTTAGTACCACCTGTGTCAGCTTTACTCACTACAGGCTCTC  346

seq1  ATCTAAGACAGTGGTTGGAGTTTTAACACAGCTCCTCCTGTTGTGAGGAC  400
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGACAGTAGTTGGAGTTTTAACACAGCTCCTCCTGTTGTGAGGAC  396

seq1  TCTCAACCATAAAATTATCTTGTTGCGGTTCTCTCGACAGCTGTCCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACCATAAAATTATCTTGTTGCGGTTCTCTCGACAGCTGTCCCTCT  446

seq1  TTATAAGTTGGCACTCCGTAAGGATGAAGCCATGTTCAGCTCCAGTGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTATAAGTTGGCACTCCGTAAGGATGAAGCCATGTTCAGCTCCAGTGCCA  496

seq1  AGACTGTGAAGCCAAATGGGGAGAAGCCGGATGAGTTCCAAGTCTGGCAT  550
      |||||||||||||||||||||||||||   ||||||||||||||||||||
seq2  AGACTGTGAAGCCAAATGGGGAGAAGCTCAATGAGTTCCAAGTCTGGCAT  546

seq1  CTCTCAGGTGCTGCTTGAGCTGGAGATGAACGCAGATGTCAAGGCTCTGC  600
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTCTCAGGTGCTGCTCGAGCTGGAGATGAACGCAGATGTCAAGGCTCTGC  596

seq1  TGCAGGAAGTCAACATCACCACAACCAAGGAAATTGAAGTTGGTGGTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAAGTCAACATCACCACAACCAAGGAAATTGAAGTTGGTGGTGGT  646

seq1  CGGAAAGCTACCATAATTTTTGTACCAGTTCCTCAGCTTTAAGTC-TTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CGGAAAGCTACCATAATTTTTGTACCAGTTCCTCAGCTTTAAGTCTTTTC  696

seq1  CAG-AAAATTCATGTCAGGCTAGTTCGTGAATTGGAGAAAAAATTCAG-T  747
      ||| ||||||||||||| |||||||||||||||||||||||||||||| |
seq2  CAGAAAAATTCATGTCA-GCTAGTTCGTGAATTGGAGAAAAAATTCAGTT  745

seq1  GGGAAGCAAGTAGTGTTCATTGCTCAGAGGAGGATTCTGCCCAAGCCAAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCAAGTAGTGTTCATTGCTCAGAGGAGGATTCTGCCCAAGCCAAC  795

seq1  CTGGAAAATCCGTATGAAAAATAAGCAGAAGCGCCCCAGAAACCACACCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAATCCGTATGAAAAATAAGCAGAAGCGCCCCAGAAACCACACCC  845

seq1  TGACAGTAGTGCATGACAGCAGACTTGGTCTTCCCAAGTGAAATTGTGGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTAGTGCATGACAGCAGACTTGGTCTTCCCAAGTGAAATTGTGGG  895

seq1  TAGAGGATCTGTG-TGAAACT-GGATGGCAGCCGGCTCATAAAAGTTCAT  945
      |||  |||||||| ||||||| |||||||||||||||||| |||||||| 
seq2  TAGGAGATCTGTGTTGAAACTGGGATGGCAGCCGGCTCATTAAAGTTCA-  944

seq1  TTAGA-CAAAGCACAGCAGAACAAC-TAGGAGCACAAGGTTGGAAC-TTT  992
      ||||| ||||||||||| |||| || ||||| ||||||| |||||| |||
seq2  TTAGATCAAAGCACAGCGGAACCACTTAGGA-CACAAGG-TGGAACTTTT  992

seq1  TTCTGGTGTGT-ACAAGAAGCCC-ACAGGCAA-GGATGT  1028
      ||||||||||| ||||||||||| |||||||| ||||||
seq2  TTCTGGTGTGTAACAAGAAGCCCAACAGGCAAGGGATGT  1031