BAC Information

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BAC

Clone NameB6Ng01-250G08
Chromosome8 (Build37)
Map Location 109,992,884 - 109,993,994
singlet/doubletsinglet
Overlap geneWwp2
Upstream gene6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, LOC100042812
Downstream genePsmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250G08.bB6Ng01-250G08.g
ACCGA057955GA057956
length9311,127
definitionB6Ng01-250G08.b B6Ng01-250G08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctacactaaaacctggtcctggactttttttggttgggagacttt
ttatgactgctgctatttctttaggggatatgggactgtttagatgtttt
atctgatcctgatttaactttggcacttggtatctgtctagaaaattgtc
tatttcatccagattttccagttttgttgaatataggcttttgtagtagg
atctgatgtttttttaatgtcctcagtttctgttgttatgtctccctttt
tatttctgattttgttaatttggatactgtctctgtgccagaagctggaa
agaacttagatgtccttcaacagaggaatggatacagagaatgtacgttt
acacaatggagtactactcagctattaaaaacaatgaattcatgaaattc
ataggcaaatggatggaattagaaaatatcatcctgagtgaggtaaccca
gtcacaaaaggacatacatgatatgtactcactgataagtagatattagc
ccaaaagcttggaatatccaatatacaattcacactcaagaaggaagacc
aaagtgtgggtgcttcagtccttcttagaaggagaacaaaatactaacgg
gaggaaatatggagataaagtatggagcagagactgaaggaaaggccacc
cacagacagccccacctggggatccatcccatatacatttaccaaaccca
gacactattgttcatgacaagaagtgcatgttgacaggagcctgatatag
ctgtctcctgagaggcactgccagtgcctgacaaatacagaggtgaatgt
tcacagccagccattggactgaacatgggggtctccaatggaggagttag
gaaaaggactaaaggaactgaaggggtttgcaacccataggaagaataac
agtatcaaacagccagaccccctagagctcc
gaattcccagagaagccaaaagcggctccctccctgtggcatccctcacc
ccgatcctctcaagtccaggctgggtctgttttgtggctttggtgtcaac
catgagctgttggaaagaaaagtccttttaacgagagtcttaaaaagtaa
acacaggccctgcaaacgttgttcaaacaaacctgctttcagcgtcactg
gctgagaggctgccttgtggagcctcatctgagggaagaagaaaaagcct
tctgttcagcatcagcatcctgtgctgggcagggtctcagtactgctgcc
ggctgctgctcagtgttccgtgaggcagtgggcactgggatctgtcggcc
ccaagggaacgtggatgtggcagagggcttttccacttctggagtggatg
agctgaatgctagtcaaggtggcttctccttccctctttgcaggtgtagg
gtggctttggcactaacacatgagtgtactgtagtcagtggctaagctgt
ttcctccaggctgcgtgtgggaatagaggaaggatgataaatttgaggct
agcctggtctcctgctcaggttcctggtctttaggccacattgagatcct
gtctcaaacataagaaacacgatgttttccttcgtttcttttcttaggct
taagagagccctcagggttggaccttggcttgtgagaggcgcttaccttt
cctttgcaggcgctttctgaggctcatgaggcttacctggagatgcaagg
ctgggaagtttgtttactactcttctcgggacaccttcctttgagtgttg
agctagactgtagagttcaaaggatgaacgacgaaggaggcagaatacat
tgcacttcctcctggatttaaggttctaaacaagacgctgtagccttgct
gactaaatggtataagccttttccatgtgggagaaagcgcaccggtgtcc
cggggcctgagttcacttgagaccttagctggtggcctacacctcacatt
gaacaagctcttcgggacggggacccttgcatttggtgacagggagtaag
aacatttgttggattcagctggttctttcccccctaaaataccttgcctt
ttacctgaacgggataatagagtcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_109992884_109993994
seq2: B6Ng01-250G08.g_68_1194

seq1  GAATTCCCAGAGAAGCCAAAAGCGGCTCCCTCCCTGTGGCATCCCTCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGAGAAGCCAAAAGCGGCTCCCTCCCTGTGGCATCCCTCACC  50

seq1  CCGATCCTCTCAAGTCCAGGCTGGGTCTGTTTTGTGGCTTTGGTGTCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATCCTCTCAAGTCCAGGCTGGGTCTGTTTTGTGGCTTTGGTGTCAAC  100

seq1  CATGAGCTGTTGGAAAGAAAAGTCCTTTTAACGAGAGTCTTAAAAAGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGCTGTTGGAAAGAAAAGTCCTTTTAACGAGAGTCTTAAAAAGTAA  150

seq1  ACACAGGCCCTGCAAACGTTGTTCAAACAAACCTGCTTTCAGCGTCACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGCCCTGCAAACGTTGTTCAAACAAACCTGCTTTCAGCGTCACTG  200

seq1  GCTGAGAGGCTGCCTTGTGGAGCCTCATCTGAGGGAAGAAGAAAAAGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAGGCTGCCTTGTGGAGCCTCATCTGAGGGAAGAAGAAAAAGCCT  250

seq1  TCTGTTCAGCATCAGCATCCTGTGCTGGGCAGGGTCTCAGTACTGCTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCAGCATCAGCATCCTGTGCTGGGCAGGGTCTCAGTACTGCTGCC  300

seq1  GGCTGCTGCTCAGTGTTCCGTGAGGCAGTGGGCACTGGGATCTGTCGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTGCTCAGTGTTCCGTGAGGCAGTGGGCACTGGGATCTGTCGGCC  350

seq1  CCAAGGGAACGTGGATGTGGCAGAGGGCTTTTCCACTTCTGGAGTGGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGGAACGTGGATGTGGCAGAGGGCTTTTCCACTTCTGGAGTGGATG  400

seq1  AGCTGAATGCTAGTCAAGGTGGCTTCTCCTTCCCTCTTTGCAGGTGTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAATGCTAGTCAAGGTGGCTTCTCCTTCCCTCTTTGCAGGTGTAGG  450

seq1  GTGGCTTTGGCACTAACACATGAGTGTACTGTAGTCAGTGGCTAAGCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTTGGCACTAACACATGAGTGTACTGTAGTCAGTGGCTAAGCTGT  500

seq1  TTCCTCCAGGCTGCGTGTGGGAATAGAGGAAGGATGATAAATTTGAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCAGGCTGCGTGTGGGAATAGAGGAAGGATGATAAATTTGAGGCT  550

seq1  AGCCTGGTCTCCTGCTCAGGTTCCTGGTCTTTAGGCCACATTGAGATCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGTCTCCTGCTCAGGTTCCTGGTCTTTAGGCCACATTGAGATCCT  600

seq1  GTCTCAAACATAAGAAACACGATGTTTTCCTTCGTTTC-TTTCTTAGGCT  649
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTCTCAAACATAAGAAACACGATGTTTTCCTTCGTTTCTTTTCTTAGGCT  650

seq1  TAAGAGAGCCCTCAGGGTTGGACCTTGGCTTGTGAGAGGCGCTTACCTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAGCCCTCAGGGTTGGACCTTGGCTTGTGAGAGGCGCTTACCTTT  700

seq1  CCTTTGCAGGGCGCTTTCTGAGGCTCATGAGGCTTACCTGGAGATGCAAG  749
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCA-GGCGCTTTCTGAGGCTCATGAGGCTTACCTGGAGATGCAAG  749

seq1  GCTGGGAAGTTTGTTTACTACTCTTCTCGGGACACCTTCCTTTGAGTGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAAGTTTGTTTACTACTCTTCTCGGGACACCTTCCTTTGAGTGTT  799

seq1  GAGCTAGACTGTAGAGTTCAAAGGATGAACGACGAAGGAGGCAGAATACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAGACTGTAGAGTTCAAAGGATGAACGACGAAGGAGGCAGAATACA  849

seq1  TTGCAC-TCCTCCTGGATTTAAGG-TCTAAACAAGACGCTGTAGCCTTGC  897
      |||||| ||||||||||||||||| |||||||||||||||||||||||||
seq2  TTGCACTTCCTCCTGGATTTAAGGTTCTAAACAAGACGCTGTAGCCTTGC  899

seq1  TGACT-AATGGTATAAGCC-TTTCCATGTGGGAGAAAGCGCA-CGGTGTC  944
      ||||| ||||||||||||| |||||||||||||||||||||| |||||||
seq2  TGACTAAATGGTATAAGCCTTTTCCATGTGGGAGAAAGCGCACCGGTGTC  949

seq1  CC-GGGCCTGAG-TCAC-TGAGACCTTAGCCTGGT-GCCTACACCTCACA  990
      || ||||||||| |||| ||||||||||| ||||| ||||||||||||||
seq2  CCGGGGCCTGAGTTCACTTGAGACCTTAG-CTGGTGGCCTACACCTCACA  998

seq1  T--GACAAGCTCTTC-GGACGGTGACCC-TGCA-TTGGTGACAGGGAGTA  1035
      |   ||||||||||| |||||| ||||| |||| ||||||||||||||||
seq2  TTGAACAAGCTCTTCGGGACGGGGACCCTTGCATTTGGTGACAGGGAGTA  1048

seq1  AGACCA-TTGTTGGAATCGAGCT-GTTCTTTCCCCCTAAAAATA-CTTG-  1081
      ||| || |||||||| || |||| ||||||||||||  |||||| |||| 
seq2  AGAACATTTGTTGGATTC-AGCTGGTTCTTTCCCCCCTAAAATACCTTGC  1097

seq1  CTTTTACATGACAGGAATAATAGAGTCACT  1111
      ||||||| |||  || ||||||||||||||
seq2  CTTTTACCTGAACGGGATAATAGAGTCACT  1127