BAC Information

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BAC

Clone NameB6Ng01-250I11
Chromosome8 (Build37)
Map Location 107,698,066 - 107,812,684
singlet/doubletdoublet
Overlap geneCbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik
Upstream geneBean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408
Downstream geneExoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250I11.bB6Ng01-250I11.g
ACCGA058047GA058048
length472206
definitionB6Ng01-250I11.b B6Ng01-250I11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,698,066 - 107,698,543)(107,812,479 - 107,812,684)
sequence
cctgagcctctggccctcagcatcattggcttcctcagtgttccccaagc
cttaggtgcaggaatgccttgtagatgtatccactgggactagctccaca
acagggattgtattttttaatttagtggagggggcagagtgtatgccatg
gtgaataggtgggggtcaccttttgttcttttttcttcctcccttccttt
cttccttccttccttccttccttccttccttccttccttccttccttcct
ttctttctttctttctttctttctttctttctttctttcaccctgtgggt
cccagagtatggatttatgttatcagatttggctgtaagaacctttacct
taatcattggcccttcgctgagtagatttaactatttgtacttgggaagg
aatttcacatttccttctcttggattttcatattttaattaatttatacc
tgttctcctgagcaccccagta
tggtaattacgtggaggtaggtggaatgaacgaagggaaaatggaagaac
tggcccatatagtggtcagtagacatccagaaaagtatacagtttgaggg
tgaatgagatctgagactagaagtcattttttaagcagccgatcactagg
taaggtggaggaagactccgagaaggaggaggatgccggggtgggggtgg
ggggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_107698066_107698543
seq2: B6Ng01-250I11.b_43_520

seq1  GAATTCCCTGAGCCTCTGGCCCTCAGCATCATTGGCTTCCTCAGTGTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGAGCCTCTGGCCCTCAGCATCATTGGCTTCCTCAGTGTTCC  50

seq1  CCAAGCCTTAGGTGCAGGAATGCCTTGTAGATGTATCCACTGGGACTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCTTAGGTGCAGGAATGCCTTGTAGATGTATCCACTGGGACTAGC  100

seq1  TCCACAACAGGGATTGTATTTTTTAATTTAGTGGAGGGGGCAGAGTGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAACAGGGATTGTATTTTTTAATTTAGTGGAGGGGGCAGAGTGTAT  150

seq1  GCCATGGTGAATAGGTGGGGGTCACCTTTTGTTCTTTTTTCTTCCTCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGTGAATAGGTGGGGGTCACCTTTTGTTCTTTTTTCTTCCTCCCT  200

seq1  TCCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC  250

seq1  CTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCACCAT  300
      ||||||| |||||||||||||||||||||||||||||||||||||||| |
seq2  CTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCACCCT  300

seq1  GTGGGTCCCAGAGTTTGGATTTATGTTATCAGAGTTGGCTGTAAGAACCT  350
      |||||||||||||| |||||||||||||||||| ||||||||||||||||
seq2  GTGGGTCCCAGAGTATGGATTTATGTTATCAGATTTGGCTGTAAGAACCT  350

seq1  TTACCTTAATCATTGGCCCTTTGCTGAGTAGTTTTAACTATTTGTACTTG  400
      ||||||||||||||||||||| ||||||||| ||||||||||||||||||
seq2  TTACCTTAATCATTGGCCCTTCGCTGAGTAGATTTAACTATTTGTACTTG  400

seq1  GGAAGGAATTTCACATTTCCTTCTCTTTGATTTTCATCTTTTAATTAATT  450
      ||||||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  GGAAGGAATTTCACATTTCCTTCTCTTGGATTTTCATATTTTAATTAATT  450

seq1  TTTACCTGTTCTCCTGAGCACCCCAGTA  478
      | ||||||||||||||||||||||||||
seq2  TATACCTGTTCTCCTGAGCACCCCAGTA  478

seq1: chr8_107812479_107812684
seq2: B6Ng01-250I11.g_74_279 (reverse)

seq1  CTCCCCCCACCCCCACCCCGGCATCCTCCTCCTTCTCGGAGTCTTCCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCCACCCCCACCCCGGCATCCTCCTCCTTCTCGGAGTCTTCCTCC  50

seq1  ACCTTACCTAGTGATCGGCTGCTTAAAAAATGACTTCTAGTCTCAGATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTACCTAGTGATCGGCTGCTTAAAAAATGACTTCTAGTCTCAGATCT  100

seq1  CATTCACCCTCAAACTGTATACTTTTCTGGATGTCTACTGACCACTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACCCTCAAACTGTATACTTTTCTGGATGTCTACTGACCACTATAT  150

seq1  GGGCCAGTTCTTCCATTTTCCCTTCGTTCATTCCACCTACCTCCACGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGTTCTTCCATTTTCCCTTCGTTCATTCCACCTACCTCCACGTAA  200

seq1  TTACCA  206
      ||||||
seq2  TTACCA  206