BAC Information

Click to search

BAC

Clone NameB6Ng01-251F23
Chromosome8 (Build37)
Map Location 89,354,767 - 89,486,178
singlet/doubletdoublet
Overlap geneBC004022, LOC666960
Upstream geneItfg1, Phkb, LOC671665, LOC100040165, Abcc12, Lonp2, Siah1a, ENSMUSG00000074178
Downstream geneEG625298, EG330819, Cbln1, LOC100040294, 4933402J07Rik, Zfp423
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251F23.bB6Ng01-251F23.g
ACCGA058649GA058650
length3561,053
definitionB6Ng01-251F23.b B6Ng01-251F23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,485,823 - 89,486,178)(89,354,767 - 89,355,823)
sequence
tattacttgtcaaaatgttatcaagaccccagggaaacgagaacaccccc
caccttcagggtgaagagagagagaaaagggagagagagcaatattcaaa
ataggttgctttgatttgaaatgaaaacacacaactttggggagggggct
ttcattattttagagaccttggcatccttgcatatacattcatgaattaa
tcattaaaaccctgaagtgtgggataaaccacgtgggttttcaatgccag
cccacaataaaggggacctcaaacggttataaagatacgacgtttacgct
gacacagcccggaatgacatttctctaggaataaagtgaatgaggtgtgt
gtgtgt

gaattctctttcttggtacctggcccactccagctcccaaaagctcagcc
cagccccatgggagtaaatgggctttcagacaaccccagagccttgtctt
caaatccctgtgacacccagacactacagaaccaggctagtcccactgtg
ctcttcctgtgtttctgacccaacgaacccataagagctaacggtagggc
tagagatggcccattgttaagagcactggccgctccttcagaggacttgg
gttcaattctcagcatccacatagcagctcacagccatttgtaactccag
ttccaggggatctcccactctctctggccttcaagggcaatgcccagaaa
gcaaaatatccatacacatgaaataaaaaatagttaacatttttttaaat
taaaaaaaaagagctaataatgtttttgcttgctatctttggggggattt
ttgttacatagcattggataccctggccatcactcctctgacacaattgt
ttgctcacagaatcttctttgtacccatcctttatcagcacacatgctga
tttctttgaggaatgtatcattcttccacaaagacagatggacccaggct
ggaggacacagactggcctcctttacctaccatcagtgtctggacttata
ttcaattcatacctcctcctccatgttctcttccagagatcttcattctt
gttttctagtttgatgaaaatgttgacatgcacacagggggacagaacaa
aatgcattatatttccatgaggccagaggaggacaccagattcccccaaa
gctgacgttacagacagttttgggctgcttgttgtgggtgctgggacctg
aactcagtcctttggaagagcagtagtgctctcagctgctgagccttctc
tcagtgacccagagggctatctatagagagaatctcttataggcatcacc
tgtcaataaaaaagccatgggccaggcaatggtggcacacaccttttaat
cccagcacttagagcagagcagagcagagcagagcaagcagagcagagca
gag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_89485823_89486178
seq2: B6Ng01-251F23.b_52_407 (reverse)

seq1  ACACACACACACCTCATTCACTTTATTCCTAGAGAAATGTCATTCCGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACCTCATTCACTTTATTCCTAGAGAAATGTCATTCCGGGC  50

seq1  TGTGTCAGCGTAAACGTCGTATCTTTATAACCGTTTGAGGTCCCCTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCAGCGTAAACGTCGTATCTTTATAACCGTTTGAGGTCCCCTTTAT  100

seq1  TGTGGGCTGGCATTGAAAACCCACGTGGTTTATCCCACACTTCAGGGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCTGGCATTGAAAACCCACGTGGTTTATCCCACACTTCAGGGTTT  150

seq1  TAATGATTAATTCATGAATGTATATGCAAGGATGCCAAGGTCTCTAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATTAATTCATGAATGTATATGCAAGGATGCCAAGGTCTCTAAAAT  200

seq1  AATGAAAGCCCCCTCCCCAAAGTTGTGTGTTTTCATTTCAAATCAAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGCCCCCTCCCCAAAGTTGTGTGTTTTCATTTCAAATCAAAGCA  250

seq1  ACCTATTTTGAATATTGCTCTCTCTCCCTTTTCTCTCTCTCTTCACCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTTTGAATATTGCTCTCTCTCCCTTTTCTCTCTCTCTTCACCCTG  300

seq1  AAGGTGGGGGGTGTTCTCGTTTCCCTGGGGTCTTGATAACATTTTGACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGGGGGTGTTCTCGTTTCCCTGGGGTCTTGATAACATTTTGACAA  350

seq1  GTAATA  356
      ||||||
seq2  GTAATA  356


seq1: chr8_89354767_89355823
seq2: B6Ng01-251F23.g_65_1117

seq1  GAATTCTCTTTCTTGGTACCTGGCCCACTCCAGCTCCCAAAAGCTCAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTCTTGGTACCTGGCCCACTCCAGCTCCCAAAAGCTCAGCC  50

seq1  CAGCCCCATGGGAGTAAATGGGCTTTCAGACAACCCCAGAGCCTTGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCATGGGAGTAAATGGGCTTTCAGACAACCCCAGAGCCTTGTCTT  100

seq1  CAAATCCCTGTGACACCCAGACACTACAGAACCAGGCTAGTCCCACTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCCTGTGACACCCAGACACTACAGAACCAGGCTAGTCCCACTGTG  150

seq1  CTCTTCCTGTGTTTCTGACCCAACGAACCCATAAGAGCTAACGGTAGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTGTGTTTCTGACCCAACGAACCCATAAGAGCTAACGGTAGGGC  200

seq1  TAGAGATGGCCCATTGTTAAGAGCACTGGCCGCTCCTTCAGAGGACTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATGGCCCATTGTTAAGAGCACTGGCCGCTCCTTCAGAGGACTTGG  250

seq1  GTTCAATTCTCAGCATCCACATAGCAGCTCACAGCCATTTGTAACTCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATTCTCAGCATCCACATAGCAGCTCACAGCCATTTGTAACTCCAG  300

seq1  TTCCAGGGGATCTCCCACTCTCTCTGGCCTTCAAGGGCAATGCCCAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGGGATCTCCCACTCTCTCTGGCCTTCAAGGGCAATGCCCAGAAA  350

seq1  GCAAAATATCCATACACATGAAATAAAAAATAGTTAACATTTTTTTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATATCCATACACATGAAATAAAAAATAGTTAACATTTTTTTAAAT  400

seq1  TAAAAAAAAAGAGCTAATAATGTTTTTGCTTGCTATCTTTGGGGGGATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAGAGCTAATAATGTTTTTGCTTGCTATCTTTGGGGGGATTT  450

seq1  TTGTTACATAGCATTGGATACCCTGGCCATCACTCCTCTGACACAATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACATAGCATTGGATACCCTGGCCATCACTCCTCTGACACAATTGT  500

seq1  TTGCTCACAGAATCTTCTTTGTACCCATCCTTTATCAGCACACATGCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCACAGAATCTTCTTTGTACCCATCCTTTATCAGCACACATGCTGA  550

seq1  TTTCTTTGAGGAATGTATCATTCTTCCACAAAGACAGATGGACCCAGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGAGGAATGTATCATTCTTCCACAAAGACAGATGGACCCAGGCT  600

seq1  GGAGGACACAGACTGGCCTCCTTTACCTACCATCAGTGTCTGGACTTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGACACAGACTGGCCTCCTTTACCTACCATCAGTGTCTGGACTTATA  650

seq1  TTCAATTCATACCTCCTCCTCCATGTTCTCTTCCAGAGATCTTCATTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTCATACCTCCTCCTCCATGTTCTCTTCCAGAGATCTTCATTCTT  700

seq1  GTTTTCTAGTTTGATGAAAATGTTGACATGCACACAGGGGGACAGAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTAGTTTGATGAAAATGTTGACATGCACACAGGGGGACAGAACAA  750

seq1  AATGCATTATATTTCCATGAGGCCAGAGGAGGACACCAGATTCCCCCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATTATATTTCCATGAGGCCAGAGGAGGACACCAGATTCCCCCAAA  800

seq1  GCTGACGTTACAGACAGTTTTGGGCTGCTTGTTGTGGGTGCTGGGACCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACGTTACAGACAGTTTTGGGCTGCTTGTTGTGGGTGCTGGGACCTG  850

seq1  AACTCAGGTCCTTTGGAAGAGCAGTAGTGCTCTCAGCTGCTGAGCCTTCT  900
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCA-GTCCTTTGGAAGAGCAGTAGTGCTCTCAGCTGCTGAGCCTTCT  899

seq1  CTCAGTGACCCAGAGGGCTATCTATAGAGAGAATCTCTTATAAGCATCAC  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTCAGTGACCCAGAGGGCTATCTATAGAGAGAATCTCTTATAGGCATCAC  949

seq1  CTGTCAATAAAAAAGCCAATGGGCCAGGCAATGGTGGCACACACC-TTTA  999
      ||||||||||||||||| ||||||||||||||||||||||||||| ||||
seq2  CTGTCAATAAAAAAGCC-ATGGGCCAGGCAATGGTGGCACACACCTTTTA  998

seq1  ATCCCAGCACTTAGAGGCAGAGGCAGAGGCAGAGGCAGAG---GCAGAGG  1046
      ||||||||||||||| ||||| ||||| ||||| ||||||   ||||| |
seq2  ATCCCAGCACTTAGA-GCAGA-GCAGA-GCAGA-GCAGAGCAAGCAGA-G  1043

seq1  CAGAGGCAGAG  1057
      |||| ||||||
seq2  CAGA-GCAGAG  1053


| Home | SequenceCutter | Blast | Download |