BAC Information

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BAC

Clone NameB6Ng01-251H04
Chromosome8 (Build37)
Map Location 26,922,232 - 27,078,024
singlet/doubletdoublet
Overlap geneStar, Ash2l, Kcnu1, Hgsnat
Upstream geneAdam5, Adam32, Adam9, Tm2d2, Htra4, Plekha2, LOC100042390, Tacc1, LOC670822, LOC100040998, Fgfr1, D030041N04Rik, LOC100042416, Whsc1l1, Ppapdc1, Bag4, Lsm1
Downstream gene4930444A02Rik, Fnta, Hook3, 1700047A11Rik, Rnf170, Thap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251H04.bB6Ng01-251H04.g
ACCGA058707GA058708
length9501,106
definitionB6Ng01-251H04.b B6Ng01-251H04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,077,088 - 27,078,024)(26,922,232 - 26,923,346)
sequence
gaattcactagtcacatcaccttgatcccggctggaagaatgaaaacatg
accttcatttggctgcctcgagggagcttaggcattctgactctgggagg
gttgaaatggtttccttctgtgtctaagaaacctgaccttgccgggcgtg
gtggtgcacgcccttaattccagcactcgggaggcagaggcagaggtagg
cggatttctgagttcgaggccagcctggtctacagagtgatttccaggac
agccagggctctacagagaaaccctgtctcgaaaaacaaaacaaaacaaa
acaaaaaaaaagaagcctgcccttacagtggtaaggctcgcttgctgctt
agatatgaccactggactcagctgcttccgagggggaaagtatagctcct
gaagttctgattcttggaggaggcaggtgctggcttgtcagttttgtggt
aagatggacacgctgttctaatacagtggcgtgctttccctgtgaatgga
tctgtcccttcacgtcagagtgacagagagctggggtgacgtacttgcaa
ggaggaactggtcatcttgccatcttgcccccgtgtaactggacccctct
ggctctcctaggtgggacgactgctgcagcgggggtggagcgaaagccta
ctctttgtcctgttgtttctcaacatgcctgtgtcagtccaaggatgttg
tgtgatccaagacttttccccctttcactcggggaacaggcagctgaaga
tgaaggcctttatttattatttaggcatttcaacgtctccatttttggtg
cttcctttgagtgtgtcttattttaatgtcttcacgtgatagtgcagatt
aagaaatggccgtggttttctaaggggatggcaagtggtaaacattccgc
ctgtgtgggttcccatgtgcggctgaatttgaacaacgtattaaacaaca

gaattctcacctgtcttcctgccttgccagagctgaacacggccccacct
gcatggtgcttcatccactggctggaagtccctccaagactaaactcact
tggctgctcagtattgacctgaaggtgagaggcctgggggggatggcctg
agtgggaagtagtgacaacagtatgctcttgtccccagcatagatagaga
agcctcttgcaggttttcttgactttcaaagcacattgttgttgtgtatg
caccatgtgtatgtgtgaatgtaggtgctcatgtgtgacagcaaggtgga
agtctgaggacactgttgatctggggctcttcctcctctacgtgggcccc
aggaacttatcagatggccaggcatgtactctgacccactaagctgcctt
gtcagccttcctcttgccttctgatagagtcacaggctgttggataggca
acggacagaagcatggcttcgtattctgccagtgtggaagcttgcaaaaa
agcttccacatctaaaaagctaggtgcaagctgggtgtggtggcgcacgc
ctttaatcccagcactcgggaggcagaggcaggcggatttctgagttcga
ggccagcctggtctacagagtgagctccaggacagccagggctatgcaga
gaaaccctgtctcgaaaaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
agctaggtgcagtgtcataaactttcagtactttagggaagaaataggaa
gatcacatttgagattccaagatagtttttttaaaatcagttttatatat
aatcatgaccatttacaaaggtgatcctagggcccagtacatggggattc
tcacctttcaggtgacacagatgtctcgctcggggtcacacatccctatc
tttaaccataaggcagctaaggccctctttatccagcaagaccaagcttg
aggtgccctgcctatgtggggtacagactgtgctcaggatccagtgcttc
ttgtgtctacccaggggtgctgtcgaaagacaatcatcaacaagttccta
tcgcagaccagatagagtcgccaccacttgcgcaggctgaagccagctgc
tctgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_27077088_27078024
seq2: B6Ng01-251H04.b_49_998 (reverse)

seq1  TGTTGTTT-ATACG-TGTTCAAA-TCAGCCGCACAT-GGAACCCACACA-  45
      |||||||| ||||| |||||||| |||||||||||| |||||||||||| 
seq2  TGTTGTTTAATACGTTGTTCAAATTCAGCCGCACATGGGAACCCACACAG  50

seq1  GCGG-ATGCTTA-CACTTGCCATCCCCTTAG-AAACCACGGCCA-TTCCT  91
      |||| ||| ||| |||||||||||||||||| |||||||||||| ||| |
seq2  GCGGAATGTTTACCACTTGCCATCCCCTTAGAAAACCACGGCCATTTCTT  100

seq1  AATCTGCACTATCACGTGAAGACATTAAAAT-AGACACACTC-AAGGAAG  139
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  AATCTGCACTATCACGTGAAGACATTAAAATAAGACACACTCAAAGGAAG  150

seq1  CACC-AAAATGGAGACGTTGAAATGCCTAAATAATAAAT-AAGGCCTTCA  187
      |||| |||||||||||||||||||||||||||||||||| ||||||||||
seq2  CACCAAAAATGGAGACGTTGAAATGCCTAAATAATAAATAAAGGCCTTCA  200

seq1  TCTTCAGCTGCCTGTTCCCCGAGTGAAAGGGGGAAAAGTCTTGGATCACA  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGCTGCCTGTTCCCCGAGTGAAAGGGGGAAAAGTCTTGGATCACA  250

seq1  CAACATCCTTGGACTGACACAGGCATGTTGAGAAACAACAGGACAAAGAG  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCCTTGGACTGACACAGGCATGTTGAGAAACAACAGGACAAAGAG  300

seq1  TAGGCTTTCGCTCCACCCCCGCTGCAGCAGTCGTCCCACCTAGGAGAGCC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTTTCGCTCCACCCCCGCTGCAGCAGTCGTCCCACCTAGGAGAGCC  350

seq1  AGAGGGGTCCAGTTACACGGGGGCAAGATGGCAAGATGACCAGTTCCTCC  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGTCCAGTTACACGGGGGCAAGATGGCAAGATGACCAGTTCCTCC  400

seq1  TTGCAAGTACGTCACCCCAGCTCTCTGTCACTCTGACGTGAAGGGACAGA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGTACGTCACCCCAGCTCTCTGTCACTCTGACGTGAAGGGACAGA  450

seq1  TCCATTCACAGGGAAAGCACGCCACTGTATTAGAACAGCGTGTCCATCTT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCACAGGGAAAGCACGCCACTGTATTAGAACAGCGTGTCCATCTT  500

seq1  ACCACAAAACTGACAAGCCAGCACCTGCCTCCTCCAAGAATCAGAACTTC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAAACTGACAAGCCAGCACCTGCCTCCTCCAAGAATCAGAACTTC  550

seq1  AGGAGCTATACTTTCCCCCTCGGAAGCAGCTGAGTCCAGTGGTCATATCT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTATACTTTCCCCCTCGGAAGCAGCTGAGTCCAGTGGTCATATCT  600

seq1  AAGCAGCAAGCGAGCCTTACCACTGTAAGGGCAGGCTTCTTTTTTTTTGT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCAAGCGAGCCTTACCACTGTAAGGGCAGGCTTCTTTTTTTTTGT  650

seq1  TTTGTTTTGTTTTGTTTTTCGAGACAGGGTTTCTCTGTAGAGCCCTGGCT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTTGTTTTTCGAGACAGGGTTTCTCTGTAGAGCCCTGGCT  700

seq1  GTCCTGGAAATCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGAAATCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCG  750

seq1  CCTACCTCTGCCTCTGCCTCCCGAGTGCTGGAATTAAGGGCGTGCACCAC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTCTGCCTCTGCCTCCCGAGTGCTGGAATTAAGGGCGTGCACCAC  800

seq1  CACGCCCGGCAAGGTCAGGTTTCTTAGACACAGAAGGAAACCATTTCAAC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCCGGCAAGGTCAGGTTTCTTAGACACAGAAGGAAACCATTTCAAC  850

seq1  CCTCCCAGAGTCAGAATGCCTAAGCTCCCTCGAGGCAGCCAAATGAAGGT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAGAGTCAGAATGCCTAAGCTCCCTCGAGGCAGCCAAATGAAGGT  900

seq1  CATGTTTTCATTCTTCCAGCCGGGATCAAGGTGATGTGACTAGTGAATTC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTCATTCTTCCAGCCGGGATCAAGGTGATGTGACTAGTGAATTC  950

seq1: chr8_26922232_26923346
seq2: B6Ng01-251H04.g_66_1171

seq1  GAATTCTCACCTGTCTTCCTGCCTTGCCAGAGCTGAACACGGCCCCACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGTCTTCCTGCCTTGCCAGAGCTGAACACGGCCCCACCT  50

seq1  GCATGGTGCTTCATCCACTGGCTGGAAGTCCCTCCAAGACTAAACTCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTGCTTCATCCACTGGCTGGAAGTCCCTCCAAGACTAAACTCACT  100

seq1  TGGCTGCTCAGTATTGACCTGAAGGTGAGAGGCCTGGGGGGGATGGCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCTCAGTATTGACCTGAAGGTGAGAGGCCTGGGGGGGATGGCCTG  150

seq1  AGTGGGAAGTAGTGACAACAGTATGCTCTTGTCCCCAGCATAGATAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAAGTAGTGACAACAGTATGCTCTTGTCCCCAGCATAGATAGAGA  200

seq1  AGCCTCTTGCAGGTTTTCTTGACTTTCAAAGCACATTGTTGTTGTGTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTTGCAGGTTTTCTTGACTTTCAAAGCACATTGTTGTTGTGTATG  250

seq1  CACCATGTGTATGTGTGAATGTAGGTGCTCATGTGTGACAGCAAGGTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGTGTATGTGTGAATGTAGGTGCTCATGTGTGACAGCAAGGTGGA  300

seq1  AGTCTGAGGACACTGTTGATCTGGGGCTCTTCCTCCTCTACGTGGGCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAGGACACTGTTGATCTGGGGCTCTTCCTCCTCTACGTGGGCCCC  350

seq1  AGGAACTTATCAGATGGCCAGGCATGTACTCTGACCCACTAAGCTGCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTTATCAGATGGCCAGGCATGTACTCTGACCCACTAAGCTGCCTT  400

seq1  GTCAGCCTTCCTCTTGCCTTCTGATAGAGTCACAGGCTGTTGGATAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCCTTCCTCTTGCCTTCTGATAGAGTCACAGGCTGTTGGATAGGCA  450

seq1  ACGGACAGAAGCATGGCTTCGTATTCTGCCAGTGTGGAAGCTTGCAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGACAGAAGCATGGCTTCGTATTCTGCCAGTGTGGAAGCTTGCAAAAA  500

seq1  AGCTTCCACATCTAAAAAGCTAGGTGCAAGCTGGGTGTGGTGGCGCACGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCACATCTAAAAAGCTAGGTGCAAGCTGGGTGTGGTGGCGCACGC  550

seq1  CTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGA  600

seq1  GGCCAGCCTGGTCTACAGAGTGAGCTCCAGGACAGCCAGGGCTATGCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCTGGTCTACAGAGTGAGCTCCAGGACAGCCAGGGCTATGCAGA  650

seq1  GAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  700

seq1  AGCTAGGTGCAGTGTCATAAAC-TTCAGTACTTTAGGGAAGAAATAGGAA  749
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGCTAGGTGCAGTGTCATAAACTTTCAGTACTTTAGGGAAGAAATAGGAA  750

seq1  GATCACATTTGAGATTCCAAGATAGTTTTTTTAAAATCAGTTTTATATAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACATTTGAGATTCCAAGATAGTTTTTTTAAAATCAGTTTTATATAT  800

seq1  AATCATGACCATTTACAAAGGTGATCCTA-GGCCCAGTACATGGGGATTC  848
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AATCATGACCATTTACAAAGGTGATCCTAGGGCCCAGTACATGGGGATTC  850

seq1  TCACCTTTCAGGTGACACAGATGTCTCGCTCGGGGTCACACAT-CCTATC  897
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCACCTTTCAGGTGACACAGATGTCTCGCTCGGGGTCACACATCCCTATC  900

seq1  TTTAACCATAAGGCAGCTAAGGCCC-CCTTATCCAGCAAGACCAAGCTTG  946
      ||||||||||||||||||||||||| | ||||||||||||||||||||||
seq2  TTTAACCATAAGGCAGCTAAGGCCCTCTTTATCCAGCAAGACCAAGCTTG  950

seq1  AGGTGCCCCTGCCTATGTGGGGTACAGAACTGTGCTCAGGATCCCAGTGC  996
      ||||| ||||||||||||||||||||| |||||||||||||| |||||||
seq2  AGGTG-CCCTGCCTATGTGGGGTACAG-ACTGTGCTCAGGAT-CCAGTGC  997

seq1  -TCTTGTGTCTACCCCAGGGGTGGCTGCCG-AAGACAATCATCAACCAGG  1044
       ||||||||||| ||||||||| |||| || ||||||||||||||| || 
seq2  TTCTTGTGTCTA-CCCAGGGGT-GCTGTCGAAAGACAATCATCAACAAGT  1045

seq1  TCCTATCGCAGACCCAGATAGAGTTCGCCAACCACCTGCGCAAGCGCCTG  1094
      |||||||||||| |||||||||| ||||| ||||| |||||| ||     
seq2  TCCTATCGCAGA-CCAGATAGAG-TCGCC-ACCACTTGCGCAGGC----T  1088

seq1  GAAGCCAGCCCTGCCTCTGAG  1115
      ||||||||  ||| |||||||
seq2  GAAGCCAG--CTG-CTCTGAG  1106