BAC Information

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BAC

Clone NameB6Ng01-251M19
Chromosome8 (Build37)
Map Location 112,150,711 - 112,271,934
singlet/doubletdoublet
Overlap genePkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e
Upstream geneAtbf1, 4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh
Downstream geneLOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398, Vac14, BC060632, 2010004A03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251M19.bB6Ng01-251M19.g
ACCGA058963GA058964
length1,0541,090
definitionB6Ng01-251M19.b B6Ng01-251M19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,270,783 - 112,271,934)(112,150,711 - 112,151,791)
sequence
gaattccaacttcacactacaaaggaattcaatacatattccaggaatgg
gaagtggacaaaacttactgaagtccaactcttcagtatccacatgaccc
aaatacctttaagaaaacaaaacaaacaaacaaaaaaccctcaacagcaa
cagaaaacccagaggaagaaaatgaaggactctcagactgtagaaacata
gctaagagataagagtttttaaaaagccaaaacccagggtaaaggaacaa
aatatttagcaggaggggctggagagatggctcagcaattgaaagtaaaa
gggctggagttgggttcccaacacccatatcagaaaggcaggcaggcagg
caggcaggcaggcatgcgcgcacgcgcgcgcgtgcacacacatacacata
cacacacacacacacacacacacacacacacacacacacacacacacaca
cgagtaggtaggctgttaggtatttgggagttttatttggttgtttttaa
tggaggtggggtttctcttatgtaatccaggctggcttcaagtttattgt
atagctagtgatgacgaactcctgcctccacctctcaagtactagaacta
caggcatgataccacctcaacttttttctatgataatattcttgcaataa
ctctaacagtaacataagaaacttttcttctttttaaccatcagtccagt
tccactttcctctccatacatgctagttatgtttcattgtacatatacat
aaataactagtgtatcttttcaatattatatacattaagacagtgtatcg
ggctggtgagatcgctcagaggtaagaacacttgactgctcttccatagg
tccaaagtttcaaatcccagcaaccatatggtggctcacaaccatccaca
ataagatctgatgccctcttctggttgtgttctgaagacagctacagtgt
aacctacatataaacaatgaaataaattcttaaaaaaaaaagaccagttg
tatcttttttatgtatttcataataagtacggtggtatctttcttaacat
taca
gaattccagaaagcttgtgccatcctccagagactgagagacttcctgcc
gacttctcccacatcagctcaggtaaacagggcgagtggagcagggcaag
gtgtcacagcagcaggaagggaagggacaacgtggaggttgtgccccctg
caccatgagagaacctgatgggaagagagctgagttattttttaagtctg
aaaggagtgtgttgtcaaccaatggtattctcagagtcacgggttgtgat
ggacagtttgccgtagatacagttggatggtcttgggacaggcatcagaa
tcagaatgcttctgacctttcggtttcctgcatccgtgtttgatgacatc
acttcctcatacctggtcagactgaatctttttttttttttttttttttt
ttggttttttgagacagggtttttctgactaacagccctggctgtcctgg
gacttgttttgtagactaggctggcctcaaattcacagagatcctcctgt
ctctgcttctagagtgctgggattgaagctacagcccaccatgcctggtt
tacagatgctcttagtaagaataactctgaaagaaaataacactccacaa
taaagataatagtagctacagtaggtgtctagaaactatccaatcaaact
tgccttgcgtctccttctgggtagttaggcaactgatcggttggtttgag
acagggtctcactaatcatcccgagctggctttgaacttactttacctcc
tgtctctgcctcctgggctctggggccacaggcatgcacactgcctctga
cttcttagcctttctttattcccttttggttttgcatgagaacagcctac
agaaaaggagaactgatgttttttgttgttcttagaactgagacggcaca
tgcttttattcctagcactcgggaggcagaaggcaggaggatcttctatg
gagtttcgaaggccagccttggtgctcagagtaagtttccaggaacagcc
caggctacataagagaaatctgtctcgaaaacaatcaaacaaacaaaatc
aaattctcctgggttttgtattctggggtcttgaagcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_112270783_112271934
seq2: B6Ng01-251M19.b_47_1100 (reverse)

seq1  TGTAATGTTAAAAGATACATTGTAGTTATTTATATATAATATATAATTTA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AAAGATACACTGTAGTTATTTATACGTGTATAATATTAAAAGATATACTG  100
                                                        
seq2  --------------------------------------------------  0

seq1  TAGCTCTCTCTATATATAATGTTA--AAAGATA-CACTGTACTTATTTAT  147
                    | ||||||||  ||||||| ||| ||||||| ||||
seq2  --------------TGTAATGTTAAGAAAGATACCACCGTACTTA-TTAT  35

seq1  G-AATACAT-TAAAAGATAC-ACT-GTCTTTTTTTTTTA--GATTTATTT  191
      | |||||||  ||||||||| ||| ||||||||||||||   ||||||||
seq2  GAAATACATAAAAAAGATACAACTGGTCTTTTTTTTTTAAGAATTTATTT  85

seq1  -ATTG-TTATATGTAGG-TACACTGTAGCTGTCTTCAG-ACAC-ACCAGA  236
       |||| ||||||||||| |||||||||||||||||||| |||| ||||||
seq2  CATTGTTTATATGTAGGTTACACTGTAGCTGTCTTCAGAACACAACCAGA  135

seq1  AGAGGGCATCGGATCTTATTGTGGATGGTTGTGAGCCACCATATGGTTGC  286
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCATCAGATCTTATTGTGGATGGTTGTGAGCCACCATATGGTTGC  185

seq1  TGGGATTTG-AACTTAGGACCTTTGGAAGAGCAGTC-AGTGTTCTTACCT  334
      ||||||||| ||||| |||||| ||||||||||||| |||||||||||||
seq2  TGGGATTTGAAACTTTGGACCTATGGAAGAGCAGTCAAGTGTTCTTACCT  235

seq1  CTGAGCGATCTCACCAGCCCGATACACTGTCTTAATGTATATAATATTG-  383
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTGAGCGATCTCACCAGCCCGATACACTGTCTTAATGTATATAATATTGA  285

seq1  AAAGATACACTAGTTATTTATGTATATGTACAATGAAACATAACTAGCAT  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATACACTAGTTATTTATGTATATGTACAATGAAACATAACTAGCAT  335

seq1  GTATGGAGAGGAAAGTGGAACTGGACTGATGGTTAAAAAGAAGAAAAGTT  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGAGAGGAAAGTGGAACTGGACTGATGGTTAAAAAGAAGAAAAGTT  385

seq1  TCTTATGTTACTGTTAGAGTTATTGCAAGAATATTATCATAGAAAAAAGT  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGTTACTGTTAGAGTTATTGCAAGAATATTATCATAGAAAAAAGT  435

seq1  TGAGGTGGTATCATGCCTGTAGTTCTAGTACTTGAGAGGTGGAGGCAGGA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGGTATCATGCCTGTAGTTCTAGTACTTGAGAGGTGGAGGCAGGA  485

seq1  GTTCGTCATCACTAGCTATACAATAAACTTGAAGCCAGCCTGGATTACAT  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGTCATCACTAGCTATACAATAAACTTGAAGCCAGCCTGGATTACAT  535

seq1  AAGAGAAACCCCACCTCCATTAAAAACAACCAAATAAAACTCCCAAATAC  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAACCCCACCTCCATTAAAAACAACCAAATAAAACTCCCAAATAC  585

seq1  CTAACAGCCTACCTACTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGCCTACCTACTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  635

seq1  GTGTGTGTGTGTGTGTGTGTATGTGTATGTGTGTGCACGCGCGCGCGTGC  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTATGTGTATGTGTGTGCACGCGCGCGCGTGC  685

seq1  GCGCATGCCTGCCTGCCTGCCTGCCTGCCTGCCTTTCTGATATGGGTGTT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCATGCCTGCCTGCCTGCCTGCCTGCCTGCCTTTCTGATATGGGTGTT  735

seq1  GGGAACCCAACTCCAGCCCTTTTACTTTCAATTGCTGAGCCATCTCTCCA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCCAACTCCAGCCCTTTTACTTTCAATTGCTGAGCCATCTCTCCA  785

seq1  GCCCCTCCTGCTAAATATTTTGTTCCTTTACCCTGGGTTTTGGCTTTTTA  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCCTGCTAAATATTTTGTTCCTTTACCCTGGGTTTTGGCTTTTTA  835

seq1  AAAACTCTTATCTCTTAGCTATGTTTCTACAGTCTGAGAGTCCTTCATTT  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCTTATCTCTTAGCTATGTTTCTACAGTCTGAGAGTCCTTCATTT  885

seq1  TCTTCCTCTGGGTTTTCTGTTGCTGTTGAGGGTTTTTTGTTTGTTTGTTT  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCTGGGTTTTCTGTTGCTGTTGAGGGTTTTTTGTTTGTTTGTTT  935

seq1  TGTTTTCTTAAAGGTATTTGGGTCATGTGGATACTGAAGAGTTGGACTTC  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTTAAAGGTATTTGGGTCATGTGGATACTGAAGAGTTGGACTTC  985

seq1  AGTAAGTTTTGTCCACTTCCCATTCCTGGAATATGTATTGAATTCCTTTG  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTTTTGTCCACTTCCCATTCCTGGAATATGTATTGAATTCCTTTG  1035

seq1  TAGTGTGAAGTTGGAATTC  1152
      |||||||||||||||||||
seq2  TAGTGTGAAGTTGGAATTC  1054

seq1: chr8_112150711_112151791
seq2: B6Ng01-251M19.g_65_1154

seq1  GAATTCCAGAAAGCTTGTGCCATCCTCCAGAGACTGAGAGACTTCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAAGCTTGTGCCATCCTCCAGAGACTGAGAGACTTCCTGCC  50

seq1  GACTTCTCCCACATCAGCTCAGGTAAACAGGGCGAGTGGAGCAGGGCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTCCCACATCAGCTCAGGTAAACAGGGCGAGTGGAGCAGGGCAAG  100

seq1  GTGTCACAGCAGCAGGAAGGGAAGGGACAACGTGGAGGTTGTGCCCCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACAGCAGCAGGAAGGGAAGGGACAACGTGGAGGTTGTGCCCCCTG  150

seq1  CACCATGAGAGAACCTGATGGGAAGAGAGCTGAGTTATTTTTTAAGTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGAGAGAACCTGATGGGAAGAGAGCTGAGTTATTTTTTAAGTCTG  200

seq1  AAAGGAGTGTGTTGTCAACCAATGGTATTCTCAGAGTCACGGGTTGTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGTGTGTTGTCAACCAATGGTATTCTCAGAGTCACGGGTTGTGAT  250

seq1  GGACAGTTTGCCGTAGATACAGTTGGATGGTCTTGGGACAGGCATCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTTTGCCGTAGATACAGTTGGATGGTCTTGGGACAGGCATCAGAA  300

seq1  TCAGAATGCTTCTGACCTTTCGGTTTCCTGCATCCGTGTTTGATGACATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATGCTTCTGACCTTTCGGTTTCCTGCATCCGTGTTTGATGACATC  350

seq1  ACTTCCTCATACCTGGTCAGACTGAATCTTTTTTTTTTTTTTTTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTCATACCTGGTCAGACTGAATCTTTTTTTTTTTTTTTTTTTTTT  400

seq1  TTGGTTTTTTGAGACAGGGTTTTTCTGACTAACAGCCCTGGCTGTCCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTTTGAGACAGGGTTTTTCTGACTAACAGCCCTGGCTGTCCTGG  450

seq1  GACTTGTTTTGTAGACTAGGCTGGCCTCAAATTCACAGAGATCCTCCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTTTTGTAGACTAGGCTGGCCTCAAATTCACAGAGATCCTCCTGT  500

seq1  CTCTGCTTCTAGAGTGCTGGGATTGAAGCTACAGCCCACCATGCCTGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTTCTAGAGTGCTGGGATTGAAGCTACAGCCCACCATGCCTGGTT  550

seq1  TACAGATGCTCTTAGTAAGAATAACTCTGAAAGAAAATAACACTCCACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGCTCTTAGTAAGAATAACTCTGAAAGAAAATAACACTCCACAA  600

seq1  TAAAGATAATAGTAGCTACAGTAGGTGTCTAGAAACTATCCAATCAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATAATAGTAGCTACAGTAGGTGTCTAGAAACTATCCAATCAAACT  650

seq1  TGCCTTGCGTCTCCTTCTGGGTAGTTAGGCAACTGATCGGTTGGTTTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGCGTCTCCTTCTGGGTAGTTAGGCAACTGATCGGTTGGTTTGAG  700

seq1  ACAGGGTCTCACTAATCATCCCGAGCTGGCTTTGAACTTACTTTACCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTCTCACTAATCATCCCGAGCTGGCTTTGAACTTACTTTACCTCC  750

seq1  TGTCTCTGCCTCCTGGGCTCTGGGGCCACAGGCATGCACACTGCCTCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGCCTCCTGGGCTCTGGGGCCACAGGCATGCACACTGCCTCTGA  800

seq1  CTTCTTAGCCTTTCTTTATTCCC-TTTGGTTTTGCATGAGAACAGCCTAC  849
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTTCTTAGCCTTTCTTTATTCCCTTTTGGTTTTGCATGAGAACAGCCTAC  850

seq1  AG-AAAGGAGAACTGATGTTTTTTGTTGTTCTTAGAACTGAGACGGCACA  898
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGAGAACTGATGTTTTTTGTTGTTCTTAGAACTGAGACGGCACA  900

seq1  TGC-TTTAATCCTAGCACTCGGGAGGCAG-AGGCAGGAGGATC-TCTAT-  944
      ||| |||| |||||||||||||||||||| ||||||||||||| ||||| 
seq2  TGCTTTTATTCCTAGCACTCGGGAGGCAGAAGGCAGGAGGATCTTCTATG  950

seq1  GAG-TTCG-AGGCCAGCC-TGGTGCTCAGAGTAAG-TTCCAGG-ACAGCC  989
      ||| |||| ||||||||| |||||||||||||||| ||||||| ||||||
seq2  GAGTTTCGAAGGCCAGCCTTGGTGCTCAGAGTAAGTTTCCAGGAACAGCC  1000

seq1  AGGGCTACAT-AGAGAAACCCTGTCTCGAAAACAAACAAACAAACAAAAA  1038
        |||||||| |||||||  ||||||||||||||| ||||||||||||| 
seq2  CAGGCTACATAAGAGAAA-TCTGTCTCGAAAACAATCAAACAAACAAAAT  1049

seq1  CAAATTCTCCCTGGTTTTTGTATTCTGGGTGTCTTGAAGCTTT  1081
      |||||||| ||||| |||||||||||||| |||||||||||||
seq2  CAAATTCT-CCTGGGTTTTGTATTCTGGG-GTCTTGAAGCTTT  1090