BAC Information

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BAC

Clone NameB6Ng01-253E11
Chromosome8 (Build37)
Map Location 49,116,935 - 49,118,050
singlet/doubletsinglet
Overlap genenone
Upstream geneEnpp6, Stox2, 4930448N21Rik, D030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2
Downstream geneLOC100040113, Dctd, Odz3, 2900073C17Rik, LOC100039866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253E11.bB6Ng01-253E11.g
ACCGA060058GA060059
length1,1081,169
definitionB6Ng01-253E11.b B6Ng01-253E11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagaagattaagacagggagatctctgagttcaaggtcatctgg
gattaaaggtgtgatggcacacacctttaatctgggctacaccttctgct
ggagacctatataaggacattgtaagaaggaagactctcctttgcctgtt
tgctgtttgggactgaacaactgctagatccttggacttccattcacagc
tactactgaaccattgttggaaattggactgcagactataagccatcaat
aaattcctttactatatagagactgcccataagttctgtgactctagaga
gccctgactagtacagtctttataagtgattctttttatgatatgaagga
gaaagaacaagaagagttgatgtggtcagatgatgaactcaggactttga
taagaaaagatcagggccttgtgtcttgggtgtgggttcaggtgaatagt
ttttaactacagtattgaaggctctggagctatagaagtggtggccctca
tgaccttgtgagaatatagtagcttcctatcttctgaggagtttggagta
agacaggaccttacaggaaagtgtttgtccctcttgggaatctgtcagca
tgtctactggttacaaaacccataagtggggtcaaatgtcagtgcaaccc
gactaaaggaggaagggctggcaccaagcaggtcaggctggggctaacac
actccagctggaaccggtgagtatgtttgattgataatcatgccagtgtt
ggaatgtcagaatggaaggagactgtcttagctccctagtaggagtccca
ggaagcaggtatagcacactgcttatataactctgcaatttagaaaaatg
tagtggattgaatgaagtgaagtcaagatagaggtttcaaggcctctgag
aaaagaatgaaatgttgagagagacagagaagccagcataggtccctcag
cgagagcagctgactctgtgtcttgagagatgcttcatttatagaggaga
caggaccaccctggtagtgtccagtgccacaggaactcattgtctttagt
caaatctaacattgacatgccatagaacatgtctatttaccagcactgaa
gctaagag
gaattcttcccccacctgatagtcaatcaactgatgtgccaaaaaacggg
tcatcgggccctcggtcccagggccctcaaagatatgggaaccggtttgt
caggacccaggaagcagtcagagaggcgacccaagaagacccacaagggt
ggacctgcgtgccgcctccgacttcctattaatgcctcaaatgagtattc
agccggtgccggtggagcctataccatccttgcccccgggaaccatgggc
cttattctcggccggggttcactcaccttgcagggcttagtagtccaccc
tggagttatggattgtcaacattcccctgaaatacaggtcctgtgctcaa
gccctaaaggcgttttttctattagtaaaggagataggatagctcagctg
ctgctcctccctgataataccagggagaaatttgcaggacctgagataaa
gaaaatgggctcctcaggaaatgattctgcctatttggttgtatctttga
atgatagacctaagctccgccttaagatcaacggaaaagagtttgaaggc
atccttgataccggagcagataaaagtataatttctacacattggtggcc
caaagcatggcccaccacagagtcatctcattcattacagggcctaggat
atcaatcatgtcccactataagctccgttgcattgacgtgggaatcctct
gaagggcagcaagggaaattcataccttatgtgctcccactcccggttaa
cctctggggaagggatattatgcagcatttgggccttattttgtccaatg
aaaacgccccatcagagggtattcagctaaagcaaaaaatatcatggcaa
agatgggttataaagaaggaaaagggttaggacatcaagaacagggaaag
gatagagcccatctcacctaatggaaaccaagacagacaggtctgggttt
tccttagcggccattggggcagcacgacccataccatggaaaacaggacc
cagtgtgggtttcctcatgcaccttatctctggaaaactagaagctgtga
ttcactgggtagagaccattaaataggcataatgacctctactcaccttg
gatactccaatttgtaatagaagtcaagaagttgagacctgccttcaatg
agcctctcagaagctccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_49116935_49118050
seq2: B6Ng01-253E11.b_43_1150

seq1  GAATTCCAGAAGATTAAGACAGGGAGATCTCTGAGTTCAAGGTCATCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAGATTAAGACAGGGAGATCTCTGAGTTCAAGGTCATCTGG  50

seq1  GATTAAAGGTGTGATGGCACACACCTTTAATCTGGGCTACACCTTCTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGTGTGATGGCACACACCTTTAATCTGGGCTACACCTTCTGCT  100

seq1  GGAGACCTATATAAGGACATTGTAAGAAGGAAGACTCTCCTTTGCCTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCTATATAAGGACATTGTAAGAAGGAAGACTCTCCTTTGCCTGTT  150

seq1  TGCTGTTTGGGACTGAACAACTGCTAGATCCTTGGACTTCCATTCACAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTTGGGACTGAACAACTGCTAGATCCTTGGACTTCCATTCACAGC  200

seq1  TACTACTGAACCATTGTTGGAAATTGGACTGCAGACTATAAGCCATCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTGAACCATTGTTGGAAATTGGACTGCAGACTATAAGCCATCAAT  250

seq1  AAATTCCTTTACTATATAGAGACTGCCCATAAGTTCTGTGACTCTAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCTTTACTATATAGAGACTGCCCATAAGTTCTGTGACTCTAGAGA  300

seq1  GCCCTGACTAGTACAGTCTTTATAAGTGATTCTTTTTATGATATGAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGACTAGTACAGTCTTTATAAGTGATTCTTTTTATGATATGAAGGA  350

seq1  GAAAGAACAAGAAGAGTTGATGTGGTCAGATGATGAACTCAGGACTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAACAAGAAGAGTTGATGTGGTCAGATGATGAACTCAGGACTTTGA  400

seq1  TAAGAAAAGATCAGGGCCTTGTGTCTTGGGTGTGGGTTCAGGTGAATAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAGATCAGGGCCTTGTGTCTTGGGTGTGGGTTCAGGTGAATAGT  450

seq1  TTTTAACTACAGTATTGAAGGCTCTGGAGCTATAGAAGTGGTGGCCCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACTACAGTATTGAAGGCTCTGGAGCTATAGAAGTGGTGGCCCTCA  500

seq1  TGACCTTGTGAGAATATAGTAGCTTCCTATCTTCTGAGGAGTTTGGAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTGTGAGAATATAGTAGCTTCCTATCTTCTGAGGAGTTTGGAGTA  550

seq1  AGACAGGACCTTACAGGAAAGTGTTTGTCCCTCTTGGGAATCTGTCAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGACCTTACAGGAAAGTGTTTGTCCCTCTTGGGAATCTGTCAGCA  600

seq1  TGTCTACTGGTTACAAAACCCATAAGTGGGGTCAAATGTCAGTGCAACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACTGGTTACAAAACCCATAAGTGGGGTCAAATGTCAGTGCAACCC  650

seq1  GACTAAAGGAGGAAGGGCTGGCACCAAGCAGGTCAGGCTGGGGCTAACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAAGGAGGAAGGGCTGGCACCAAGCAGGTCAGGCTGGGGCTAACAC  700

seq1  ACTCCAGCTGGAACCGGTGAGTATGTTTGATTGATAATCATGCCAGTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGCTGGAACCGGTGAGTATGTTTGATTGATAATCATGCCAGTGTT  750

seq1  GGAATGTCAGAATGGAAGGAGACTGTCTTAGCTCCCTAGTAGGAGTCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTCAGAATGGAAGGAGACTGTCTTAGCTCCCTAGTAGGAGTCCCA  800

seq1  GGAAGCAGGTATAGCACACTGCTTATATAACTCTGCAATTTAGAAAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAGGTATAGCACACTGCTTATATAACTCTGCAATTTAGAAAAATG  850

seq1  TAGTGGATTGAATGAAGTGAAGTCAAGATAGAGGTTTCAAGGCCTCTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGATTGAATGAAGTGAAGTCAAGATAGAGGTTTCAAGGCCTCTGAG  900

seq1  AAAAGAATGAAATGTTGAGAGAGACAGAGAAGCCAGCATAGGTCCCTCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATGAAATGTTGAGAGAGACAGAGAAGCCAGCATAGGTCCCTCAG  950

seq1  CGAGAGCAGCTGACTCTGTGTCTTGAGAAGATGCTTCATTTATAGAGGAG  1000
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CGAGAGCAGCTGACTCTGTGTCTTGAG-AGATGCTTCATTTATAGAGGAG  999

seq1  ACAAGGACACCCTGGTAAGTGTCCCAGTGCCAACAGGAAACTCATTGGTC  1050
      ||| |  ||||||||| ||||| |||||||| ||||| |||||||| |||
seq2  ACAGGACCACCCTGGT-AGTGT-CCAGTGCC-ACAGG-AACTCATT-GTC  1044

seq1  TTAGGTCAAATCTAACATTTGACAATGCCATAGAACAGGTCTATTTAACA  1100
      ||  ||||||||||||| ||||| ||||||||||||| ||||||||| ||
seq2  TTTAGTCAAATCTAACA-TTGAC-ATGCCATAGAACATGTCTATTTACCA  1092

seq1  GCACTGAGGTTAAGAG  1116
      ||||||| | ||||||
seq2  GCACTGAAGCTAAGAG  1108