BAC Information

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BAC

Clone NameB6Ng01-254K20
Chromosome8 (Build37)
Map Location 109,781,140 - 109,970,589
singlet/doubletdoublet
Overlap geneLOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812
Upstream geneSmpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b
Downstream genePsmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254K20.bB6Ng01-254K20.g
ACCGA061081GA061082
length992652
definitionB6Ng01-254K20.b B6Ng01-254K20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,969,851 - 109,970,589)(109,781,140 - 109,781,857)
sequence
gaattccaggacagcctgagctacattgagataccctgtcttgaaaaaaa
aaaaaaaaaaaaaaaaagacaaattctctttagccaagattgatttcaaa
ctttctatgtaaccttaaacttcagatcctcttgcctccatagataagac
agacacacaccatcaaacctggtttgtgagaagctggagacagaacccag
ggctttctttgaacacactacgctccatccctcactccaaactcatcctt
ttaaggcccataattgaagtgggtttttattagcattggaactgagctgc
catcaactccgattccagaccatttcatcactcccaaataaaccttgtca
ataccagcccacctccgctcccccagctccaggcaaacatcagcctattt
ttgtcatggtggatttgcttactccagacaattcatacaaatgcagtcac
gagacctgtgtgtagtcttgtaactgctttctttcatggaatgtttcagg
tcactgtaacgtgtatcttcccttttgtggctaaatgttgctccattgaa
cagctctaccctctacttatccatttgtctgtcgtggacactgggctata
aggaccggttgattcactattttccttccttgtttgtttaggttttttaa
taattacttattaatttgcttttaatttgcttgtatgcatacctacatga
gttcttatgtgcaccaagggcgtgtagctgcccagagaggcccattggtg
ttggatgccctagaagtggaactgcatgcagttgtgagccactgtgtgga
tcccaaacctgggtcctctggatggcaagtaagccatgcctccagatccg
ccatcttcttcttggtgctcagatgtaaggagcccaggcctgaccacgcc
aagaaagcattgccactctacacacagcatacatgccaccaccatcagtc
ttgcacctcaccactcagctttacttctgttttgcttttaac
gaattcttgggctagggatgtagttcagctggtaggctagtgtgcacgaa
gccctggcttccattgctagcactgcataaagccaggcgtggagaggtgt
gcctataaccccagcccccgaggtagaaacagaagatcaaggttgctctg
gctacacatcgagtacaaggccagcctgggatacacgagaccctgtctga
aatgggggagaaaaattaattcttgcaaagttgggactcaatccagatct
gattttagcctctaaggttttcatttttaccatatggtctccttctgtag
ggaggcagggagaggagccaagaaatgccaagaaaacactctacaaatta
acttctgcagtaggagactcaggaaattgggacttgctccataattttgc
ctaacaacctccacaatcacacaggtgaagcttttcgctctgtagccacg
tggctcctgggccacagttcttctcttctgataaatattttccttgatag
gttgcttctctcagacttccaagaaagagtccctaagaaatcatcaggac
cagcacacctagtattgaagccagatagccttcctccctcactcccccct
ccctccacccttctatttctcttcttccttcttctccctctccctctctc
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_109969851_109970589
seq2: B6Ng01-254K20.b_45_783 (reverse)

seq1  CTCTCTGGGCAGCTACACGCCCTTGGTGCACATAAGAACTCATGTAGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGGGCAGCTACACGCCCTTGGTGCACATAAGAACTCATGTAGGTA  50

seq1  TGCATACAAGCAAATTAAAAGCAAATTAATAAGTAATTATTAAAAAACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACAAGCAAATTAAAAGCAAATTAATAAGTAATTATTAAAAAACCT  100

seq1  AAACAAACAAGGAAGGAAAATAGTGAATCAACCGGTCCTTATAGCCCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAGGAAGGAAAATAGTGAATCAACCGGTCCTTATAGCCCAGT  150

seq1  GTCCACGACAGACAAATGGATAAGTAGAGGGTAGAGCTGTTCAATGGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACGACAGACAAATGGATAAGTAGAGGGTAGAGCTGTTCAATGGAGC  200

seq1  AACATTTAGCCACAAAAGGGAAGATACACGTTACAGTGACCTGAAACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTAGCCACAAAAGGGAAGATACACGTTACAGTGACCTGAAACATT  250

seq1  CCATGAAAGAAAGCAGTTACAAGACTACACACAGGTCTCGTGACTGCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAAGAAAGCAGTTACAAGACTACACACAGGTCTCGTGACTGCATT  300

seq1  TGTATGAATTGTCTGGAGTAAGCAAATCCACCATGACAAAAATAGGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAATTGTCTGGAGTAAGCAAATCCACCATGACAAAAATAGGCTGA  350

seq1  TGTTTGCCTGGAGCTGGGGGAGCGGAGGTGGGCTGGTATTGACAAGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCCTGGAGCTGGGGGAGCGGAGGTGGGCTGGTATTGACAAGGTTT  400

seq1  ATTTGGGAGTGATGAAATGGTCTGGAATCGGAGTTGATGGCAGCTCAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGAGTGATGAAATGGTCTGGAATCGGAGTTGATGGCAGCTCAGTT  450

seq1  CCAATGCTAATAAAAACCCACTTCAATTATGGGCCTTAAAAGGATGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGCTAATAAAAACCCACTTCAATTATGGGCCTTAAAAGGATGAGTT  500

seq1  TGGAGTGAGGGATGGAGCGTAGTGTGTTCAAAGAAAGCCCTGGGTTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGAGGGATGGAGCGTAGTGTGTTCAAAGAAAGCCCTGGGTTCTGT  550

seq1  CTCCAGCTTCTCACAAACCAGGTTTGATGGTGTGTGTCTGTCTTATCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCTTCTCACAAACCAGGTTTGATGGTGTGTGTCTGTCTTATCTAT  600

seq1  GGAGGCAAGAGGATCTGAAGTTTAAGGTTACATAGAAAGTTTGAAATCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAAGAGGATCTGAAGTTTAAGGTTACATAGAAAGTTTGAAATCAA  650

seq1  TCTTGGCTAAAGAGAATTTGTCTTTTTTTTTTTTTTTTTTTTTTTTCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCTAAAGAGAATTTGTCTTTTTTTTTTTTTTTTTTTTTTTTCAAG  700

seq1  ACAGGGTATCTCAATGTAGCTCAGGCTGTCCTGGAATTC  739
      |||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTATCTCAATGTAGCTCAGGCTGTCCTGGAATTC  739

seq1: chr8_109781140_109781857
seq2: B6Ng01-254K20.g_70_721

seq1  GAATTCTTGGGCTAGGGATGTAGTTCAGCTGGTAGGCTAGTGTGCACGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGCTAGGGATGTAGTTCAGCTGGTAGGCTAGTGTGCACGAA  50

seq1  GCCCTGGCTTCCATTGCTAGCACTGCATAAAGCCAGGCGTGGAGAGGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCTTCCATTGCTAGCACTGCATAAAGCCAGGCGTGGAGAGGTGT  100

seq1  GCCTATAACCCCAGCCCCCGAGGTAGAAACAGAAGATCAAGGTTGCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATAACCCCAGCCCCCGAGGTAGAAACAGAAGATCAAGGTTGCTCTG  150

seq1  GCTACACATCGAGTACAAGGCCAGCCTGGGATACACGAGACCCTGTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACATCGAGTACAAGGCCAGCCTGGGATACACGAGACCCTGTCTGA  200

seq1  AATGGGGGAGAAAAATTAATTCTTGCAAAGTTGGGACTCAATCCAGATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGGAGAAAAATTAATTCTTGCAAAGTTGGGACTCAATCCAGATCT  250

seq1  GATTTTAGCCTCTAAGGTTTTCATTTTTACCATATGGTCTCCTTCTGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAGCCTCTAAGGTTTTCATTTTTACCATATGGTCTCCTTCTGTAG  300

seq1  GGAGGCAGGGAGAGGAGCCAAGAAATGCCAAGAAAACACTCTACAAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGGGAGAGGAGCCAAGAAATGCCAAGAAAACACTCTACAAATTA  350

seq1  ACTTCTGCAGTAGGAGACTCAGGAAATTGGGACTTGCTCCATAATTTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGCAGTAGGAGACTCAGGAAATTGGGACTTGCTCCATAATTTTGC  400

seq1  CTAACAACCTCCACAATCACACAGGTGAAGCTTTTCGCTCTGTAGCCACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAACCTCCACAATCACACAGGTGAAGCTTTTCGCTCTGTAGCCACG  450

seq1  TGGCTCCTGGGCCACAGTTCTTCTCTTCTGATAAATATTTTCCTTGATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCTGGGCCACAGTTCTTCTCTTCTGATAAATATTTTCCTTGATAG  500

seq1  GTTGCTTCTCTCAGACTTCCAAGAAAGAGTCCCTAAGAAATCATCAGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTCTCTCAGACTTCCAAGAAAGAGTCCCTAAGAAATCATCAGGAC  550

seq1  CAGCACACCTAGTATTGAAGCCAGATAGCCTTCCTCCCTCACTCCCCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACACCTAGTATTGAAGCCAGATAGCCTTCCTCCCTCACTCCCCCCT  600

seq1  CCCTCCCCCCTCCCTATTCTCTTCTTCCTCCTTCTCCCTCTCCCTCTCCC  650
      |||||| |||| |   ||||||||||||| |||||||||||||||||| |
seq2  CCCTCCACCCTTCTATTTCTCTTCTTCCTTCTTCTCCCTCTCCCTCTCTC  650

seq1  TCTCCCTCTCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTC  700
      ||                                                
seq2  TC------------------------------------------------  652

seq1  TCCCTCTCCCTCTCTCTC  718
                        
seq2  ------------------  652