BAC Information

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BAC

Clone NameB6Ng01-255C14
Chromosome8 (Build37)6 (Build37)
Map Location 5,922,674 - 5,923,86887,817,836 - 87,817,888
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039687, LOC436026, Slc10a2, LOC434275, LOC623409, LOC669429
Downstream geneLOC100040360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255C14.bB6Ng01-255C14.g
ACCGA061437GA061438
length1,1941,011
definitionB6Ng01-255C14.b B6Ng01-255C14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,922,674 - 5,923,868)(87,817,836 - 87,817,888)
sequence
gaattccaacttactatttggttgtacaacaacattcttaaaactggcaa
ggtttttttgttttacaaagcatctagttgttattattattaatcctccc
atgtaactcctttggtcacgtttatattcatggattctatagttcttact
ttcctaaatacataaaacaaatgctaggctcatatattgttactgtttgt
gaaagttttcaaggatggatcaacaaccatttggttttggataaccagtt
ggtgtgttctttcttgggaatcactatttctcctgctctcagttctttgt
aaaatctttggttatttattcctcatatatgatcagcttagagtaatagt
taactgggccaatactgagccatttgttactgacaagataagcaggatgt
attgtctccttctaagcaagtcttgtttcttgtttcaaattcaatgttca
ttcttacaatataaacaaaaggcactagttagctttcctcactcattatc
tacattaatgacctttatatgacagtgactaaaatacttcaggataagtt
aaagaacaaatatttatttcagcttatggtctcagaggacttagtgtctg
gttgcttgacctcctgtgcttgggcagaacatcatggctgcaggagtcag
tggtaagaaagatcatctcttaagggatagaaagtaaagactaaagatag
gactaggcaggccccactttctaatgctgcatgaacaccacaaaatagca
ccattaagtgtataagtggtaaacaaattcctgtgataaatagtttatac
tcagtcagtaagattatctgactcagtcttgcaacataatttaattggct
agattactcctttccacatgctacattctagtgtctccaagaaaacaatt
aatttgcgtgtatatttgaacacatgtgagtttttttttccttcctgtgt
tcagggttatgtgtatttcaagtcttcacctattcagacacttcaaaatt
tttcttcagagagctatgttaccataattccctctgatgtacctacacat
ctgtccttcaaaaagcagtgtattcatactttatttaccagaacttgtgc
tctgactactttatacatattcctcatgttcttttgtggattcttcaaac
tccacaccaatggctttctgaattgaactatttagcttctcttt

gaattctgtagctacagcttaataggattttagaaaagaactcaaagaac
agggggccaagaaaaatacagagtaaagactgtgctcatgaaatttcaga
gggaacaaagagtctactgagaattggattgttagtcatatatgttactt
ttagggaaaaaatgtacactgaagagaagaacgaacagttaagagttctt
gttgctctctcagagggcccaggttcagttctcaagactcaagttgactt
gctcacaatcacttagaactccagcactaggaatccaatgacctcttcga
gtgtctataaatatatggacttatgtaactataatctctttttcacacac
atacacataattaaatacacataactaaaaattaaaagtatatatataat
ctggctgatttttgtacatattaaaatttaatgaagtaataatggataat
ttattctttttattaggagaaatgtatgcagcaaaacgttcatgctgcat
tatggttactacccatggcatctagtcttttttacagtgaaacagagtag
gaatgtttgaaaaaatcttatttgatcagaaaaggagtatgagaagttta
aattctcagtcatgaagagtggagagaaagcagctgtagttgttaaaaga
aatagactcattattaataaatcccacactctttaggagataattgaaag
tttaaggataagaactcatttattaaaggctctatgggttgtaaaatatt
gattcatttgacatgagaaaacatagagaatatctctgaaaagtaacaat
gtctcacaagcaacaaccaaggaaagtcttctctaaacccatgttctacc
accatggcagtgcagtctaccatgtatgtgtgtctaccatgtatgtgtca
gaaaaggaaactgtgtcttgtgcttgtagcagaactttgtacccccctcc
ccatccatatggtgctgatttcaaaagcactatggtgtaaaaggtgacat
ggggtcatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_5922674_5923868
seq2: B6Ng01-255C14.b_46_1239

seq1  GAATTCCAACTTACTATTTGGTTGTACAACAACATTCTTAAAACTGGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACTTACTATTTGGTTGTACAACAACATTCTTAAAACTGGCAA  50

seq1  GGTTTTTTTGTTTTACAAAGCATCTAGTTGTTATTATTATTAATCCTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTTGTTTTACAAAGCATCTAGTTGTTATTATTATTAATCCTCCC  100

seq1  ATGTAACTCCTTTGGTCACGTTTATATTCATGGATTCTATAGTTCTTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACTCCTTTGGTCACGTTTATATTCATGGATTCTATAGTTCTTACT  150

seq1  TTCCTAAATACATAAAACAAATGCTAGGCTCATATATTGTTACTGTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAATACATAAAACAAATGCTAGGCTCATATATTGTTACTGTTTGT  200

seq1  GAAAGTTTTCAAGGATGGATCAACAACCATTTGGTTTTGGATAACCAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTTTCAAGGATGGATCAACAACCATTTGGTTTTGGATAACCAGTT  250

seq1  GGTGTGTTCTTTCTTGGGAATCACTATTTCTCCTGCTCTCAGTTCTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTTCTTTCTTGGGAATCACTATTTCTCCTGCTCTCAGTTCTTTGT  300

seq1  AAAATCTTTGGTTATTTATTCCTCATATATGATCAGCTTAGAGTAATAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTTGGTTATTTATTCCTCATATATGATCAGCTTAGAGTAATAGT  350

seq1  TAACTGGGCCAATACTGAGCCATTTGTTACTGACAAGATAAGCAGGATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGGCCAATACTGAGCCATTTGTTACTGACAAGATAAGCAGGATGT  400

seq1  ATTGTCTCCTTCTAAGCAAGTCTTGTTTCTTGTTTCAAATTCAATGTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTCCTTCTAAGCAAGTCTTGTTTCTTGTTTCAAATTCAATGTTCA  450

seq1  TTCTTACAATATAAACAAAAGGCACTAGTTAGCTTTCCTCACTCATTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACAATATAAACAAAAGGCACTAGTTAGCTTTCCTCACTCATTATC  500

seq1  TACATTAATGACCTTTATATGACAGTGACTAAAATACTTCAGGATAAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAATGACCTTTATATGACAGTGACTAAAATACTTCAGGATAAGTT  550

seq1  AAAGAACAAATATTTATTTCAGCTTATGGTCTCAGAGGACTTAGTGTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACAAATATTTATTTCAGCTTATGGTCTCAGAGGACTTAGTGTCTG  600

seq1  GTTGCTTGACCTCCTGTGCTTGGGCAGAACATCATGGCTGCAGGAGTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTGACCTCCTGTGCTTGGGCAGAACATCATGGCTGCAGGAGTCAG  650

seq1  TGGTAAGAAAGATCATCTCTTAAGGGATAGAAAGTAAAGACTAAAGATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGAAAGATCATCTCTTAAGGGATAGAAAGTAAAGACTAAAGATAG  700

seq1  GACTAGGCAGGCCCCACTTTCTAATGCTGCATGAACACCACAAAATAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGGCAGGCCCCACTTTCTAATGCTGCATGAACACCACAAAATAGCA  750

seq1  CCATTAAGTGTATAAGTGGTAAACAAATTCCTGTGATAAATAGTTTATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAAGTGTATAAGTGGTAAACAAATTCCTGTGATAAATAGTTTATAC  800

seq1  TCAGTCAGTAAGATTATCTGACTCAGTCTTGCAACATAATTTAATTGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCAGTAAGATTATCTGACTCAGTCTTGCAACATAATTTAATTGGCT  850

seq1  AGATTACTCCTTTCCACATGCTACATTCTAGTGTCTCCAAGAAAACAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACTCCTTTCCACATGCTACATTCTAGTGTCTCCAAGAAAACAATT  900

seq1  AATTTGCGTGTATATTTGAACACATGTGAG-TTTTTTTTCCTTCCTGTGT  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AATTTGCGTGTATATTTGAACACATGTGAGTTTTTTTTTCCTTCCTGTGT  950

seq1  TCAGGGTTATGTGTATTTCAAGTCTTCACCTATTCAGACACTTCAAAAAT  999
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCAGGGTTATGTGTATTTCAAGTCTTCACCTATTCAGACACTTC-AAAAT  999

seq1  TTTTCTTCAGGAGAGCTATGTTACCATAATTCCCTTCTGATTGTACCTAC  1049
      ||||||||| |||||||||||||||||||||||| ||||| |||||||||
seq2  TTTTCTTCA-GAGAGCTATGTTACCATAATTCCC-TCTGA-TGTACCTAC  1046

seq1  ACATCTGTCCTTCAAAAAGCAGTGTATTCATACTTTATTTACCAG-ACTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACATCTGTCCTTCAAAAAGCAGTGTATTCATACTTTATTTACCAGAACTT  1096

seq1  GTGCTTCTTGACTACCTTTATAC-TATT-CTCATG-TCTTTGTTGGAATT  1145
      |||||   |||||| |||||||| |||| |||||| |||||  ||| |||
seq2  GTGCT--CTGACTA-CTTTATACATATTCCTCATGTTCTTTTGTGG-ATT  1142

seq1  CTTCCAAACT-CACACC-ATGGCTTTCTG-AGTGGACTATTTTAGC-TCT  1191
      ||| |||||| |||||| ||||||||||| | || |||| |||||| |||
seq2  CTT-CAAACTCCACACCAATGGCTTTCTGAATTGAACTA-TTTAGCTTCT  1190

seq1  CTTT  1195
      ||||
seq2  CTTT  1194


seq1: chr6_87817836_87817888
seq2: B6Ng01-255C14.g_411_460

seq1  ACACACATATATATAATTTTTAAAAATACAAGAAAAAAAATTAAAAGTAT  50
      ||||||||| | ||||   ||||| | |||  |  |||||||||||||||
seq2  ACACACATACACATAA---TTAAATACACATAACTAAAAATTAAAAGTAT  47

seq1  ATA  53
      |||
seq2  ATA  50


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