BAC Information

Click to search

BAC

Clone NameB6Ng01-256B09
Chromosome8 (Build37)
Map Location 17,262,550 - 17,263,481
singlet/doubletsinglet
Overlap geneCsmd1
Upstream genenone
Downstream geneLOC665638, LOC100040466
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256B09.bB6Ng01-256B09.g
ACCGA062134GA062135
length1,178932
definitionB6Ng01-256B09.b B6Ng01-256B09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggccaatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaacagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagccacaaataatataaaatatctcggcg
tgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtcc
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccattaaaattccaactcaattcttc
aacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacc
gaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatca
ccatgcctgacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaagtggaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctgg
cacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatc
tccttgtactaggtcaatctaagtggatcaggaacttcacataaaacaga
gacactgaaactatagaggagaaagtggggaaaagcttgaagaatatggc
acaggtcaaaattcttgaacgaacgccaatgcgtgtgctgtagaatcgag
attggacaaattggggtaacctaatgta

gaattcaaggctctgtcagtctttctttctttaggactttaattaacaat
gatattaaaacaagcatattgttacatcagaatacctggaattaactatg
catttacttgtgtttatgggagttatgagtttctagccaatagtgcataa
cttttaaaaatggttaaagatacaaacttaatcttttatacttatagttc
taaaatgtgcttttaaaatatgcgctctcaggaaaagtatgctcacttgg
aaatctgaaaataacctggtactatctgtatttccaagcatcagatttca
tgactgtttttgttgttgttatgtttgttttctttttttatgtagctgtc
tactgtttgtgctggattatatcacctcaacttaaagcaaattctagaag
gaaaattacttccactgaaagagatatgacctcctttacaaaactcagca
gtgaaagcaagacctggcacagtgtagggaggctgttctgtatcacaggc
tgttgtgctaatatgaaaggaacaacagaggctgtgtgcctagcacaggc
ttctgaaagcctttaccaaatgcactttgctatccagccttttctatgtt
tccactgatgatctaccagttaagagaagtcatgaaaaagtgaaatttgc
ctgctactagaatgttgtggggaagaaaaattgtcctttttcatgtaccc
actggtgagagcatcaagtcccaaaggacaatttcaaatcagtcattacc
cagatcatcctggtcacactcagtggaccacaaacccaaacaaaagaaat
ggatttggtagagggatgcacaggagagggctgttacaggatagcaggga
cagagataaaagatggtaagtgagaaaatgtatcaaatgtattttatata
tatatatatatatgtgtgtgtgtgtgtgtgcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_17262550_17263481
seq2: B6Ng01-256B09.g_66_997

seq1  GAATTCAAGGCTCTGTCAGTCTTTCTTTCTTTAGGACTTTAATTAACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCTCTGTCAGTCTTTCTTTCTTTAGGACTTTAATTAACAAT  50

seq1  GATATTAAAACAAGCATATTGTTACATCAGAATACCTGGAATTAACTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTAAAACAAGCATATTGTTACATCAGAATACCTGGAATTAACTATG  100

seq1  CATTTACTTGTGTTTATGGGAGTTATGAGTTTCTAGCCAATAGTGCATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACTTGTGTTTATGGGAGTTATGAGTTTCTAGCCAATAGTGCATAA  150

seq1  CTTTTAAAAATGGTTAAAGATACAAACTTAATCTTTTATACTTATAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAAATGGTTAAAGATACAAACTTAATCTTTTATACTTATAGTTC  200

seq1  TAAAATGTGCTTTTAAAATATGCGCTCTCAGGAAAAGTATGCTCACTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTGCTTTTAAAATATGCGCTCTCAGGAAAAGTATGCTCACTTGG  250

seq1  AAATCTGAAAATAACCTGGTACTATCTGTATTTCCAAGCATCAGATTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGAAAATAACCTGGTACTATCTGTATTTCCAAGCATCAGATTTCA  300

seq1  TGACTGTTTTTGTTGTTGTTATGTTTGTTTTCTTTTTTTATGTAGCTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTTTTTGTTGTTGTTATGTTTGTTTTCTTTTTTTATGTAGCTGTC  350

seq1  TACTGTTTGTGCTGGATTATATCACCTCAACTTAAAGCAAATTCTAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTTGTGCTGGATTATATCACCTCAACTTAAAGCAAATTCTAGAAG  400

seq1  GAAAATTACTTCCACTGAAAGAGATATGACCTCCTTTACAAAACTCAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTACTTCCACTGAAAGAGATATGACCTCCTTTACAAAACTCAGCA  450

seq1  GTGAAAGCAAGACCTGGCACAGTGTAGGGAGGCTGTTCTGTATCACAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGCAAGACCTGGCACAGTGTAGGGAGGCTGTTCTGTATCACAGGC  500

seq1  TGTTGTGCTAATATGAAAGGAACAACAGAGGCTGTGTGCCTAGCACAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGCTAATATGAAAGGAACAACAGAGGCTGTGTGCCTAGCACAGGC  550

seq1  TTCTGAAAGCCTTTACCAAATGCACTTTGCTATCCAGCCTTTTCTATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAAGCCTTTACCAAATGCACTTTGCTATCCAGCCTTTTCTATGTT  600

seq1  TCCACTGATGATCTACCAGTTAAGAGAAGTCATGAAAAAGTGAAATTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGATGATCTACCAGTTAAGAGAAGTCATGAAAAAGTGAAATTTGC  650

seq1  CTGCTACTAGAATGTTGTGGGGAAGAAAAATTGTCCTTTTTCATGTACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTACTAGAATGTTGTGGGGAAGAAAAATTGTCCTTTTTCATGTACCC  700

seq1  ACTGGTGAGAGCATCAAGTCCCAAAGGACAATTTCAAATCAGTCATTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGAGAGCATCAAGTCCCAAAGGACAATTTCAAATCAGTCATTACC  750

seq1  CAGATCATCCTGGTCACACTCAGTGGACCACAAACCCAAACAAAAGAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCATCCTGGTCACACTCAGTGGACCACAAACCCAAACAAAAGAAAT  800

seq1  GGATTTGGTAGAGGGATGCACAGGAGAGGGCTGTTACAGGATAGCAGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGGTAGAGGGATGCACAGGAGAGGGCTGTTACAGGATAGCAGGGA  850

seq1  CAGAGATAAAAGATGGTAAGTGAGAAAATGTATCAAATGTATTTTATATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATAAAAGATGGTAAGTGAGAAAATGTATCAAATGTATTTTATATA  900

seq1  TATATATATATATGTGTGTGTGTGTGTGTGTG  932
      |||||||||||||||||||||||||||||| |
seq2  TATATATATATATGTGTGTGTGTGTGTGTGCG  932


| Home | SequenceCutter | Blast | Download |