BAC Information

Click to search

BAC

Clone NameB6Ng01-257M10
Chromosome8 (Build37)
Map Location 117,562,531 - 117,740,438
singlet/doubletdoublet
Overlap geneWwox
Upstream geneNudt7, AI427515, Clec3a
Downstream geneMaf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257M10.bB6Ng01-257M10.g
ACCGA063387GA063388
length1,177328
definitionB6Ng01-257M10.b B6Ng01-257M10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,562,531 - 117,563,715)(117,740,111 - 117,740,438)
sequence
gaattccattcttcaccccctgctgatccccccaactgcaatttctaatt
aattagtagagtcgtgccttccagaaaagagcaggcatacctttgggaac
ctcaccaggaagaagtgggtcttgtggtgcaaaaagaaaagcttctctct
ctctttttttaatattaaaaattaattaaaaacggaatgtgtgaaagccg
gggattttatcattagtacccattccagagggccaattcctgttggtgaa
actttagtcattgtcacaatacattggattttaggagggtgaccttagta
agtctagctcatcaatgggtatgggggttcctgaaacttagggccttctg
tgcttgagttggcttttaaaagtattaaactcaaaaaggcattattcatg
gtctgctgtgttctgaggatgtgacggggcagacggagtatcaatagtca
tcttgaattggtttcaaagaaaagacacggagtgtgtgtgtgtgtgtgtt
ctgtataggtaaatgtaagcctgtgcatgtatgtgcaggcgcacctgtgc
acatgtgggccattgcatcccatgttttacacaggtcctgcatctgaact
ctggtccttagggtattgcaacaggtactttcccagcctctgacaattat
tttcaatggaagaaagtccaaaaagccatttcatgtgagagaacacaggg
cgtttcctctttgctttgcaaagacggtatttctctaacacaaaacagtc
tctgacaaatcatactttcccctggcttaaatgagaaattataataaact
tcagggtttcataacataccctgacagtggtggcctatcgctcccgttgc
tcacatatctctcaattttaagagaaggttttacattctatttttataag
tatatgaattatataaagttacaggttgtatcatagcacttcatgcatgt
gtgtgtaatatactttgggtcttgtcaccctccccgtccaagagcaaaaa
tttagggtgactccaaaagaaaatatattgagttttagccctttatcgta
ttcttacaagttgcataactctgctcaagtgtgagactgaagttgcttct
tacatcacttactatcctcaagtgtagacttgtcagaggaaaagatttga
tcagacctctgaaaaatagttattgtt

cgtgcccagactttgcattagatacacttgcaagaccgtgtattgttctg
cctgagggagtgtgtaacgtcattgctcgcagcgcccacagacttgagac
ttcagccttgcactgtgtatctgacaccaatccatggggattctggcctt
cagcatcacaccgggaggtggaagcttcccgcttcctgacccaagcagct
gccaggttctctgctctccaacgtgtagatgaccgccattgaattactca
aactcctatgcaataaatacctttttaaaattttctatgtgtgtgtgatt
tgatgtatggtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_117562531_117563715
seq2: B6Ng01-257M10.b_46_1222

seq1  GAATTCCATTCTTCACCCCCTGCTGATCCCCCCAACTGCAATTTCTAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCTTCACCCCCTGCTGATCCCCCCAACTGCAATTTCTAATT  50

seq1  AATTAGTAGAGTCGTGCCTTCCAGAAAAGAGCAGGCATACCTTTGGGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTAGAGTCGTGCCTTCCAGAAAAGAGCAGGCATACCTTTGGGAAC  100

seq1  CTCACCAGGAAGAAGTGGGTCTTGTGGTGCAAAAAGAAAAGCTTCTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCAGGAAGAAGTGGGTCTTGTGGTGCAAAAAGAAAAGCTTCTCTCT  150

seq1  CTCTTTTTTTAATATTAAAAATTAATTAAAAACGGAATGTGTGAAAGCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTTTAATATTAAAAATTAATTAAAAACGGAATGTGTGAAAGCCG  200

seq1  GGGATTTTATCATTAGTACCCATTCCAGAGGGCCAATTCCTGTTGGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTTATCATTAGTACCCATTCCAGAGGGCCAATTCCTGTTGGTGAA  250

seq1  ACTTTAGTCATTGTCACAATACATTGGATTTTAGGAGGGTGACCTTAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGTCATTGTCACAATACATTGGATTTTAGGAGGGTGACCTTAGTA  300

seq1  AGTCTAGCTCATCAATGGGTATGGGGGTTCCTGAAACTTAGGGCCTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGCTCATCAATGGGTATGGGGGTTCCTGAAACTTAGGGCCTTCTG  350

seq1  TGCTTGAGTTGGCTTTTAAAAGTATTAAACTCAAAAAGGCATTATTCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGAGTTGGCTTTTAAAAGTATTAAACTCAAAAAGGCATTATTCATG  400

seq1  GTCTGCTGTGTTCTGAGGATGTGACGGGGCAGACGGAGTATCAATAGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTGTGTTCTGAGGATGTGACGGGGCAGACGGAGTATCAATAGTCA  450

seq1  TCTTGAATTGGTTTCAAAGAAAAGACACGGAGTGTGTGTGTGTGTGTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAATTGGTTTCAAAGAAAAGACACGGAGTGTGTGTGTGTGTGTGTT  500

seq1  CTGTATAGGTAAATGTAAGCCTGTGCATGTATGTGCAGGCGCACCTGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAGGTAAATGTAAGCCTGTGCATGTATGTGCAGGCGCACCTGTGC  550

seq1  ACATGTGGGCCATTGCATCCCATGTTTTACACAGGTCCTGCATCTGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGGGCCATTGCATCCCATGTTTTACACAGGTCCTGCATCTGAACT  600

seq1  CTGGTCCTTAGGGTATTGCAACAGGTACTTTCCCAGCCTCTGACAATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCTTAGGGTATTGCAACAGGTACTTTCCCAGCCTCTGACAATTAT  650

seq1  TTTCAATGGAAGAAAGTCCAAAAAGCCATTTCATGTGAGAGAACACAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATGGAAGAAAGTCCAAAAAGCCATTTCATGTGAGAGAACACAGGG  700

seq1  CGTTTCCTCTTTGCTTTGCAAAGACGGTATTTCTCTAACACAAAACAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CGTTTCCTCTTTGCTTTGCAAAGACGGTATTTCTCTAACACAAAACA-GT  749

seq1  CTCTGACAAATCATACTTTCCCCTGGCTTAAATGAGAAATTATAATAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACAAATCATACTTTCCCCTGGCTTAAATGAGAAATTATAATAAAC  799

seq1  TTCAGGGTTTCATAACATACCCTGACAGTGGTGGCCTATCGCTCCCGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGTTTCATAACATACCCTGACAGTGGTGGCCTATCGCTCCCGTTG  849

seq1  CTCACATATCTCTCAATTTTAAGAGAAGGTTTTACATTCTATTTTTATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATATCTCTCAATTTTAAGAGAAGGTTTTACATTCTATTTTTATAA  899

seq1  GTATATGAATTATATAAAGTTACAGGTTGTATCATAGCACTTCATGCATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGAATTATATAAAGTTACAGGTTGTATCATAGCACTTCATGCATG  949

seq1  TGTGTGTAATATACTTT-GGTCTTGTCACC--TCCCGTCCAAGAGCAAAA  997
      ||||||||||||||||| ||||||||||||   |||||||||||||||||
seq2  TGTGTGTAATATACTTTGGGTCTTGTCACCCTCCCCGTCCAAGAGCAAAA  999

seq1  ATTTAGGGTGACTCCAAAAGAAAATATATTGAGTTTTAGGCCTTTTATCG  1047
      |||||||||||||||||||||||||||||||||||||| ||| |||||||
seq2  ATTTAGGGTGACTCCAAAAGAAAATATATTGAGTTTTA-GCCCTTTATCG  1048

seq1  GTAATTCTTAACAAG-TGCATAAACTCTGCTTCAAGTGTGAGAACTGAAG  1096
         |||||| ||||| ||||| |||||||| ||||||||||| |||||||
seq2  --TATTCTT-ACAAGTTGCAT-AACTCTGC-TCAAGTGTGAG-ACTGAAG  1092

seq1  TGGCTTCTAACATCACTTTACTATCCTCAAGTGTAGACTTTGTTAGAGGA  1146
      | |||||| ||||||| ||||||||||||||||||||| |||| ||||||
seq2  TTGCTTCTTACATCAC-TTACTATCCTCAAGTGTAGAC-TTGTCAGAGGA  1140

seq1  GAGATTTTGATCAATACTCTTGAAAAATAGGTTATTGTT  1185
       |   ||||||||   ||| ||||||||| |||||||||
seq2  AAAGATTTGATCAGACCTC-TGAAAAATA-GTTATTGTT  1177


seq1: chr8_117740111_117740438
seq2: B6Ng01-257M10.g_76_403 (reverse)

seq1  CACACACACACACACACACCATACATCAAATCACACACACATAGAAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACCATACATCAAATCACACACACATAGAAAATT  50

seq1  TTAAAAAGGTATTTATTGCATAGGAGTTTGAGTAATTCAATGGCGGTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGGTATTTATTGCATAGGAGTTTGAGTAATTCAATGGCGGTCAT  100

seq1  CTACACGTTGGAGAGCAGAGAACCTGGCAGCTGCTTGGGTCAGGAAGCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACGTTGGAGAGCAGAGAACCTGGCAGCTGCTTGGGTCAGGAAGCGG  150

seq1  GAAGCTTCCACCTCCCGGTGTGATGCTGAAGGCCAGAATCCCCATGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTCCACCTCCCGGTGTGATGCTGAAGGCCAGAATCCCCATGGATT  200

seq1  GGTGTCAGATACACAGTGCAAGGCTGAAGTCTCAAGTCTGTGGGCGCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCAGATACACAGTGCAAGGCTGAAGTCTCAAGTCTGTGGGCGCTGC  250

seq1  GAGCAATGACGTTACACACTCCCTCAGGCAGAACAATACACGGTCTTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAATGACGTTACACACTCCCTCAGGCAGAACAATACACGGTCTTGCA  300

seq1  AGTGTATCTAATGCAAAGTCTGGGCACG  328
      ||||||||||||||||||||||||||||
seq2  AGTGTATCTAATGCAAAGTCTGGGCACG  328


| Home | SequenceCutter | Blast | Download |