BAC Information

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BAC

Clone NameB6Ng01-258F03
Chromosome8 (Build37)
Map Location 97,828,189 - 97,996,506
singlet/doubletdoublet
Overlap geneBC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15, Gtl3, Csnk2a2
Upstream geneNup93, Slc12a3, Herpud1, EG434339, AI451557, Cpne2, 2310065K24Rik, Rspry1, Arl2bp, Pllp, Ccl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942, Ccdc102a, Gpr114, Gpr56, Gpr97, Gm770, Katnb1, Kifc3
Downstream gene4933406B17Rik, Ccdc113, 4931432M23Rik, EG546088, LOC100041040, Gins3, LOC547022, Ndrg4, Setd6, Cnot1, LOC100041953, LOC100041088, BC031853, LOC100041972, Got2, LOC667445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258F03.bB6Ng01-258F03.g
ACCGA063790GA063791
length1,126134
definitionB6Ng01-258F03.b B6Ng01-258F03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,995,374 - 97,996,506)(97,828,189 - 97,828,322)
sequence
gaattcatcataggctttctgcttcagtttgctaagcactagggttataa
aagtaagcagccatgagcagctttaaacttggttcatggatttgtttatt
gtatttattcatgaagcataaaaatagagcctactcatgagggttctggt
gttgcaacatacaaaaggaaaacctttttagaacacagtttgaaaacaat
ataaaaacaaaatagtgatgttgatttccaagggtctgagaggacttgtg
ggtgattacaactctggcaaggaatcagacacttgtgaattgttgaggga
gaggctagagataaagccatcttgtcagatgttggtgtccagcatttatg
ttgcaggtgaaataaaagatccttatttgcacatgtattttcttagctaa
tctctctaagggtatctaatgaaaactaaaagggtacattgacttaaaat
gaagtaaattttatatctttcttgtatgtaacaaatgttttattataact
cctttacaggtaaaatcagtggccagcattttgtgtttctcagaggtgat
atgtgccaggttctgtggggagttaacaaattctaatgtctgggaagcct
gtttctctggaatctgaaccattaaaggaagtgttctgaagacatggata
gacttttaaagaatatccttttgaaggatatgtttttaaagaaatcatgg
gaatcagtcatttttgaaggttgcatatttgggaacatcttttctcctcc
tcactcatgtcttcactataattctgtgttgaattcctgatctcttctgt
tttgaagagtttgttccagtgtcagcactggtgccattcctgtttgatct
aaagatttctctttcctttttctggaagcgtttaggaatttctcttcatt
cccagtcttgtgaatgttcaaatgtgtgccttcctgtgggcgcctttcat
cctttgttctggattcttgctgcgccttttccatctgaagctcatggctt
tccatattttcagtgttctttgatttctccccccctttctgttctcactg
tctaagaatatattcaaatgtagactttgtatttagaagtcattcagtcc
tctgatttttaaataagtcttctgtt
ctttctaagggttcctgtcactaattcatttatttctattaaggagtagt
aagtattctatggcatggatttttgcataccttgcttatctgtttccaag
ctgaaggaactgtttgcggtgggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_97995374_97996506
seq2: B6Ng01-258F03.b_43_1168 (reverse)

seq1  AACAGAAGACTATTTTTAAAAATTCAGA-GACTGAAATGGACTTCTAAAA  49
      ||||||||||| | |||||||| ||||| |||||||   ||||||| |||
seq2  AACAGAAGACT-TATTTAAAAA-TCAGAGGACTGAA--TGACTTCT-AAA  45

seq1  TACAAAGTCTAACATTTGAATTATATTC-TAGACAGTGAGAACAAGAAAG  98
      |||||||||| ||||||||| ||||||| |||||||||||||| ||||||
seq2  TACAAAGTCT-ACATTTGAA-TATATTCTTAGACAGTGAGAAC-AGAAAG  92

seq1  GGGGGGAGAAATCAAAGAACACTGAAAATATGGAAAGCCATGAGCTTTCA  148
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGGGGGAGAAATCAAAGAACACTGAAAATATGGAAAGCCATGAGC-TTCA  141

seq1  GATGGAAAAGGCGCAGCAAGAATCCAGAACAAAGGATGAAAGGCGCCCAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAAAAGGCGCAGCAAGAATCCAGAACAAAGGATGAAAGGCGCCCAC  191

seq1  AGGAAGGCACACATTTGAACATTCACAAGACTGGGAATGAAGAGAAATTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGCACACATTTGAACATTCACAAGACTGGGAATGAAGAGAAATTC  241

seq1  CTAAACGCTTCCAGAAAAAGGAAAGAGAAATCTTTAGATCAAACAGGAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACGCTTCCAGAAAAAGGAAAGAGAAATCTTTAGATCAAACAGGAAT  291

seq1  GGCACCAGTGCTGACACTGGAACAAACTCTTCAAAACAGAAGAGATCAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCAGTGCTGACACTGGAACAAACTCTTCAAAACAGAAGAGATCAGG  341

seq1  AATTCAACACAGAATTATAGTGAAGACATGAGTGAGGAGGAGAAAAGATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAACACAGAATTATAGTGAAGACATGAGTGAGGAGGAGAAAAGATG  391

seq1  TTCCCAAATATGCAACCTTCAAAAATGACTGATTCCCATGATTTCTTTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAATATGCAACCTTCAAAAATGACTGATTCCCATGATTTCTTTAA  441

seq1  AAACATATCCTTCAAAAGGATATTCTTTAAAAGTCTATCCATGTCTTCAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATCCTTCAAAAGGATATTCTTTAAAAGTCTATCCATGTCTTCAG  491

seq1  AACACTTCCTTTAATGGTTCAGATTCCAGAGAAACAGGCTTCCCAGACAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTCCTTTAATGGTTCAGATTCCAGAGAAACAGGCTTCCCAGACAT  541

seq1  TAGAATTTGTTAACTCCCCACAGAACCTGGCACATATCACCTCTGAGAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTTGTTAACTCCCCACAGAACCTGGCACATATCACCTCTGAGAAA  591

seq1  CACAAAATGCTGGCCACTGATTTTACCTGTAAAGGAGTTATAATAAAACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAATGCTGGCCACTGATTTTACCTGTAAAGGAGTTATAATAAAACA  641

seq1  TTTGTTACATACAAGAAAGATATAAAATTTACTTCATTTTAAGTCAATGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTACATACAAGAAAGATATAAAATTTACTTCATTTTAAGTCAATGT  691

seq1  ACCCTTTTAGTTTTCATTAGATACCCTTAGAGAGATTAGCTAAGAAAATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTTAGTTTTCATTAGATACCCTTAGAGAGATTAGCTAAGAAAATA  741

seq1  CATGTGCAAATAAGGATCTTTTATTTCACCTGCAACATAAATGCTGGACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCAAATAAGGATCTTTTATTTCACCTGCAACATAAATGCTGGACA  791

seq1  CCAACATCTGACAAGATGGCTTTATCTCTAGCCTCTCCCTCAACAATTCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATCTGACAAGATGGCTTTATCTCTAGCCTCTCCCTCAACAATTCA  841

seq1  CAAGTGTCTGATTCCTTGCCAGAGTTGTAATCACCCACAAGTCCTCTCAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTCTGATTCCTTGCCAGAGTTGTAATCACCCACAAGTCCTCTCAG  891

seq1  ACCCTTGGAAATCAACATCACTATTTTGTTTTTATATTGTTTTCAAACTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGGAAATCAACATCACTATTTTGTTTTTATATTGTTTTCAAACTG  941

seq1  TGTTCTAAAAAGGTTTTCCTTTTGTATGTTGCAACACCAGAACCCTCATG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAAAAAGGTTTTCCTTTTGTATGTTGCAACACCAGAACCCTCATG  991

seq1  AGTAGGCTCTATTTTTATGCTTCATGAATAAATACAATAAACAAATCCAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGCTCTATTTTTATGCTTCATGAATAAATACAATAAACAAATCCAT  1041

seq1  GAACCAAGTTTAAAGCTGCTCATGGCTGCTTACTTTTATAACCCTAGTGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAAGTTTAAAGCTGCTCATGGCTGCTTACTTTTATAACCCTAGTGC  1091

seq1  TTAGCAAACTGAAGCAGAAAGCCTATGATGAATTC  1133
      |||||||||||||||||||||||||||||||||||
seq2  TTAGCAAACTGAAGCAGAAAGCCTATGATGAATTC  1126

seq1: chr8_97828189_97828322
seq2: B6Ng01-258F03.g_73_206

seq1  CTTTCTAAGGGTTCCTGTCACTAATTCATTTATTTCTATTAAGGAGTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAAGGGTTCCTGTCACTAATTCATTTATTTCTATTAAGGAGTAGT  50

seq1  AAGTATTCTATGGCATGGATTTTTGCATACCTTGCTTATCTGTTTCCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTCTATGGCATGGATTTTTGCATACCTTGCTTATCTGTTTCCAAG  100

seq1  CTGAAGGAACTGTTTGCGGTGGGGGGGGGGGGGG  134
      ||||||||||||||||||||||||||||||||||
seq2  CTGAAGGAACTGTTTGCGGTGGGGGGGGGGGGGG  134