BAC Information

Click to search

BAC

Clone NameB6Ng01-258L09
Chromosome8 (Build37)
Map Location 64,667,997 - 64,830,018
singlet/doubletdoublet
Overlap geneLOC100040775
Upstream geneSh3rf1, EG664975, Cbr4, Palld, LOC100040872, BC013672, Anxa10
Downstream geneLOC384830, LOC100040804, LOC665267, Spock3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258L09.bB6Ng01-258L09.g
ACCGA064080GA064081
length1,1961,022
definitionB6Ng01-258L09.b B6Ng01-258L09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,828,809 - 64,830,018)(64,667,997 - 64,669,016)
sequence
gaattcctcaaaattgttacaattggtcagataaatttgaatcttggcat
aacctgcccaatgtcatctttgctgtgtgggaatcacctttatgagcatc
atattttagcactgtgatgaaactcatactgatgttttaatggcatcttc
tcatggctccatgcattttcatttacaaccaatataacacttacaggctt
ctttccacttagattttcttctcttgccccacatatcttcaagcatggat
tatgccatgtgcaagcatttgaagagtagtttccagagcagtctaagcca
acccttcttacagttaataggaagtggcttttaattttgattcccaagaa
tgtaagaaattgataataagctgatgtacatggatatgactaaaccaggg
gagtcagttcttttattgaatcagtattccaaattagaatggtaaaattc
cattcagtaggtcagaagatctattatcctttaaattggcatagaagaat
ttcattttatgaatttctactagtacttcactagaatatcatatactata
ttctgttattatccatatatgtatatgcatatatttctttttttttttta
aagatttatttattattatatgtaagtacactgtagctgtcttcagacac
accagaagagggagtcagatcttgttatggatggttgtgagccaccatgt
ggttgctgggatttgaactctggaccttcggaagagcagtcgggtgctct
tacccactaagccatctcaccagcccctatgcatatatttctaataaatt
aatatttcattcagttggtttaccgaagacactattgttataaatgtctt
gatttcatatcaaataaatatttttatacttttctactaacagcatcaat
aaaaaactgttttattcatatacagttttggaagtatttctgagtttcta
taaatgactttcaaatacatacgtatcattattgccaaaacattcctcct
tagatttaaagcataatttacttcacaaaattcataagcaacctcatatt
attatgccacatatgctttcacttatgattaaaattccaacttacagcat
gccaaggaaatgccttaatatagtaatagtacccaattaatttacttagt
aatctcgcataatacttcgacacgttctcctcccctcttctcctcc

gaattctgaaggtctcatgaaaatgtctgctactccagtttgacattcat
aatatttcacatgagaaactctaaccttgaaccacctgcaaaaaggaact
tgagaacaatagctccaacttagctaaagtgatatgcacttcagtttaat
gtgtgtgtgtgtttgtgtgtgtgtgtacatgcacatgtgcaatggcaatt
gtattcatacatatacagattgtaagtgtgtggagattacattatgtatg
tacaaatgaatttagaagaaccaagaaacttgcagcagtgaatcacactt
tccagattgttcaaaacagttttagactttctcaggtttatcatagactg
gctttgtgtatgtttatatttctagtagtgcattttggattttattcatt
gaatttcctcaatattggtacacttaatattttcccaaatcaattaaata
gaattaatggaatagtttaagataataaagtttaccagtaaaaatctgaa
ttgtgttatataatgtttgaccaaataaatttgataattactttttaaaa
aaaattaatctttttttacagtccagattttaacgccctccctgtccacc
ctctgactgttccacatcccatacctcctcctccttttcatctccagcca
acccctacccccaatccctatcccaccaaacctccccactccctgggctt
ccagtctcttgagggttgttaggtgcatcttctctcactgaggccaggcc
aggcaactctctgctgtaaatgtgctgggggtctcatatcagctggtgta
tgctgcctggttggtggtctaatgtctgagagatctcagggtccaggtta
gctgagactgctggtcctcctatagggtcaccctcctcctgtgcttcttt
cagcttttccctaattcaaccacaggggtcagcagcttctgtcaattaaa
tagatataggtatctgcattgaactcagctgcttgttgggtcttttggag
gcactcatgatagaaccctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_64828809_64830018
seq2: B6Ng01-258L09.b_45_1240 (reverse)

seq1  GGAGGAGAAGA-GGGAGGAGAAACTGTAGTTAGAAGTAATATATGACAGA  49
      ||||||||||| ||||||||||  ||    | |||||| |||  ||    
seq2  GGAGGAGAAGAGGGGAGGAGAACGTG----TCGAAGTATTATGCGA----  42

seq1  AGAATAAATAAGTAAATAAATGAGTAAATAAATAAATAAATAATTAAAGC  99
         || | ||||||||| |||  |  | |  || | ||    ||||| ||
seq2  --GATTACTAAGTAAATTAATTGGGTACT--ATTACTA---TATTAAGGC  85

seq1  ATTTTCCCTGGCATGCTGTAGTTTGAATTTTTAATCATAAGTGAAAGCAT  149
      | ||||| ||||||||||||  ||| | ||||||||||||||||||||||
seq2  A-TTTCCTTGGCATGCTGTAAGTTGGAATTTTAATCATAAGTGAAAGCAT  134

seq1  ATGT-GCATAAT-ATATGA-GTTGCTTATTGATTTTTGTGAAGTAAATTA  196
      |||| ||||||| |||||| |||||||| ||| |||||||||||||||||
seq2  ATGTGGCATAATAATATGAGGTTGCTTA-TGAATTTTGTGAAGTAAATTA  183

seq1  TGCTTTTAAAATCTAA-GAGGAATGTTTT-GCAATAATGATACGTATGTA  244
      ||||||  |||||||| |||||||||||| ||||||||||||||||||||
seq2  TGCTTT--AAATCTAAGGAGGAATGTTTTGGCAATAATGATACGTATGTA  231

seq1  TTTGAAAGTCATTTATAGAAACTCAGAAATACTTCCAAAACTGTATATGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAGTCATTTATAGAAACTCAGAAATACTTCCAAAACTGTATATGA  281

seq1  ATAAAACAGTTTTTTATTGATGCTGTTAGTAGAAAAGTATAAAAATATTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACAGTTTTTTATTGATGCTGTTAGTAGAAAAGTATAAAAATATTT  331

seq1  ATTTGATATGAAATTCAAGACATTTATAACAATAGTGTCTTCGGTAAACC  394
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATTTGATATGAAA-TCAAGACATTTATAACAATAGTGTCTTCGGTAAACC  380

seq1  AACTGAATGAAATATTAATTTATTAGAAATATATGCATAGGGGCTGGTGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAATGAAATATTAATTTATTAGAAATATATGCATAGGGGCTGGTGA  430

seq1  GATGGCTTAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCAGAGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTTAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCAGAGT  480

seq1  TCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAACAAGATCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAACAAGATCT  530

seq1  GACTCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATATA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATATA  580

seq1  ATAATAAATAAATCTTTAAAAAAAAAAAAGAAATATATGCATATACATAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAATAAATCTTTAAAAAAAAAAAAGAAATATATGCATATACATAT  630

seq1  ATGGATAATAACAGAATATAGTATATGATATTCTAGTGAAGTACTAGTAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATAATAACAGAATATAGTATATGATATTCTAGTGAAGTACTAGTAG  680

seq1  AAATTCATAAAATGAAATTCTTCTATGCCAATTTAAAGGATAATAGATCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATAAAATGAAATTCTTCTATGCCAATTTAAAGGATAATAGATCT  730

seq1  TCTGACCTACTGAATGGAATTTTACCATTCTAATTTGGAATACTGATTCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCTACTGAATGGAATTTTACCATTCTAATTTGGAATACTGATTCA  780

seq1  ATAAAAGAACTGACTCCCCTGGTTTAGTCATATCCATGTACATCAGCTTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAACTGACTCCCCTGGTTTAGTCATATCCATGTACATCAGCTTA  830

seq1  TTATCAATTTCTTACATTCTTGGGAATCAAAATTAAAAGCCACTTCCTAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAATTTCTTACATTCTTGGGAATCAAAATTAAAAGCCACTTCCTAT  880

seq1  TAACTGTAAGAAGGGTTGGCTTAGACTGCTCTGGAAACTACTCTTCAAAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTAAGAAGGGTTGGCTTAGACTGCTCTGGAAACTACTCTTCAAAT  930

seq1  GCTTGCACATGGCATAATCCATGCTTGAAGATATGTGGGGCAAGAGAAGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCACATGGCATAATCCATGCTTGAAGATATGTGGGGCAAGAGAAGA  980

seq1  AAATCTAAGTGGAAAGAAGCCTGTAAGTGTTATATTGGTTGTAAATGAAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAAGTGGAAAGAAGCCTGTAAGTGTTATATTGGTTGTAAATGAAA  1030

seq1  ATGCATGGAGCCATGAGAAGATGCCATTAAAACATCAGTATGAGTTTCAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGGAGCCATGAGAAGATGCCATTAAAACATCAGTATGAGTTTCAT  1080

seq1  CACAGTGCTAAAATATGATGCTCATAAAGGTGATTCCCACACAGCAAAGA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGCTAAAATATGATGCTCATAAAGGTGATTCCCACACAGCAAAGA  1130

seq1  TGACATTGGGCAGGTTATGCCAAGATTCAAATTTATCTGACCAATTGTAA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTGGGCAGGTTATGCCAAGATTCAAATTTATCTGACCAATTGTAA  1180

seq1  CAATTTTGAGGAATTC  1210
      ||||||||||||||||
seq2  CAATTTTGAGGAATTC  1196


seq1: chr8_64667997_64669016
seq2: B6Ng01-258L09.g_67_1085

seq1  GAATTCTGAAGGTCTCATGAAAATGTCTGCTACTCCAGTTTGACATTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAGGTCTCATGAAAATGTCTGCTACTCCAGTTTGACATTCAT  50

seq1  AATATTTCACATGAGAAACTCTAACCTTGAACCACCTGCAAAAAGGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCACATGAGAAACTCTAACCTTGAACCACCTGCAAAAAGGAACT  100

seq1  TGAGAACAATAGCTCCAACTTAGCTAAAGTGATATGCACTTCAGTTTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACAATAGCTCCAACTTAGCTAAAGTGATATGCACTTCAGTTTAAT  150

seq1  GTGTGTGTGTGTTTGTGTGTGTGTGTACATGCACATGTGCAATGGCAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTTTGTGTGTGTGTGTACATGCACATGTGCAATGGCAATT  200

seq1  GTATTCATACATATACAGATTGTAAGTGTGTGGAGATTACATTATGTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCATACATATACAGATTGTAAGTGTGTGGAGATTACATTATGTATG  250

seq1  TACAAATGAATTTAGAAGAACCAAGAAACTTGCAGCAGTGAATCACACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATGAATTTAGAAGAACCAAGAAACTTGCAGCAGTGAATCACACTT  300

seq1  TCCAGATTGTTCAAAACAGTTTTAGACTTTCTCAGGTTTATCATAGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATTGTTCAAAACAGTTTTAGACTTTCTCAGGTTTATCATAGACTG  350

seq1  GCTTTGTGTATGTTTATATTTCTAGTAGTGCATTTTGGATTTTATTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTGTATGTTTATATTTCTAGTAGTGCATTTTGGATTTTATTCATT  400

seq1  GAATTTCCTCAATATTGGTACACTTAATATTTTCCCAAATCAATTAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCCTCAATATTGGTACACTTAATATTTTCCCAAATCAATTAAATA  450

seq1  GAATTAATGGAATAGTTTAAGATAATAAAGTTTACCAGTAAAAATCTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAATGGAATAGTTTAAGATAATAAAGTTTACCAGTAAAAATCTGAA  500

seq1  TTGTGTTATATAATGTTTGACCAAATAAATTTGATAATTACTTTTTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTATATAATGTTTGACCAAATAAATTTGATAATTACTTTTTAAAA  550

seq1  AAAATTAATCTTTTTTTACAGTCCAGATTTTAACGCCCTCCCTGTCCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAATCTTTTTTTACAGTCCAGATTTTAACGCCCTCCCTGTCCACC  600

seq1  CTCTGACTGTTCCACATCCCATACCTCCTCCTCCTTTTCATCTCCAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACTGTTCCACATCCCATACCTCCTCCTCCTTTTCATCTCCAGCCA  650

seq1  ACCCCTACCCCCAATCCCTATCCCACCAAACCTCCCCACTCCCTGGGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTACCCCCAATCCCTATCCCACCAAACCTCCCCACTCCCTGGGCTT  700

seq1  CCAGTCTCTTGAGGGTTGTTAGGTGCATCTTCTCTCACTGAGGCCAGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTCTTGAGGGTTGTTAGGTGCATCTTCTCTCACTGAGGCCAGGCC  750

seq1  AGGCAACTCTCTGCTGTAAATGTGCTGGGGGTCTCATATCAGCTGGTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACTCTCTGCTGTAAATGTGCTGGGGGTCTCATATCAGCTGGTGTA  800

seq1  TGCTGCCTGGTTGGTGGTCTAATGTCTGAGAGATCTCAGGGTCCAGGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCTGGTTGGTGGTCTAATGTCTGAGAGATCTCAGGGTCCAGGTTA  850

seq1  GCTGAGACTGCTGGTCCTCCTATAGGGTCACCCTCCTCCTGTGCTTCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGACTGCTGGTCCTCCTATAGGGTCACCCTCCTCCTGTGCTTCTTT  900

seq1  CAGCTTTTCCCTAATTCAACCACAGGGGTCAGCAGCTTCTGTCAATTAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTTCCCTAATTCAACCACAGGGGTCAGCAGCTTCTGTCAATTAAA  950

seq1  TAGATATAGGTATCTGCATTGAACTCAGCTGCTTGTTGGGTCTTTTGGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAGATATAGGTATCTGCATTGAACTCAGCTGCTTGTTGGGTCTTTTGGA-  999

seq1  GGCACTCATGATAGACCCCT  1020
      ||||||||||||||| ||||
seq2  GGCACTCATGATAGAACCCT  1019


| Home | SequenceCutter | Blast | Download |