BAC Information

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BAC

Clone NameB6Ng01-259J11
Chromosome8 (Build37)
Map Location 118,867,171 - 119,005,554
singlet/doubletdoublet
Overlap geneLOC384868
Upstream geneWwox, Maf
Downstream geneLOC668233, Dynlrb2, Cdyl2, LOC100043053, 2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1, Gan, 4933407C03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259J11.bB6Ng01-259J11.g
ACCGA064733GA064734
length310531
definitionB6Ng01-259J11.b B6Ng01-259J11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,005,245 - 119,005,554)(118,867,171 - 118,867,707)
sequence
tctctaatccttcctcactgtcagtgcacccagaattagttctgcagctc
tctttaaggaatgaaaggctccaagagaactgggcagggactcggtgtgt
ctctgccacccaatcagcatctggagcaggggaggttcgataatattcat
aaaggccaacaatatagatattaaattttgttctgttgattattaacttc
tgaactggaatcataaccctcccaaatccaaataatttttaagataaact
tttaagatattattattaatattataattgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtg
agtaaaaaaaaaaaaaaaaaacaaaaacaaaaaacaaaaaaaaaatgcct
tctagacaaattgcattcacccaagacatgctttgggggaccacttgaca
agaggctctctagggttcttttctatcaaccacatgtccactgtgggtat
ggtgatttttttttctcaagattcctcaccctcctcaaggggtcaaccac
tggccctgggggaatgtagatcatcaccaggctcaaggcctgtgctcagg
agaccatgatcaacaccacaaagcctgcagaggaggcttttattggtccc
ccaaagcattagtgccagggcctgtgatgggggaggggagaaggggcctt
gggtggaaacaaccttctacgctcaaaagaaccaactgtgctgattcaaa
aaaaaaaaaaatttttttttcaaaagtgcctgtgggtaaatttgagctgc
ccacagctccccaggggcattgagaacttgctgccaagccatttctgtgg
atttcattcaaatccaatttttagtgttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_119005245_119005554
seq2: B6Ng01-259J11.b_50_359 (reverse)

seq1  CACACACACACACACACACACACACACACACAATTATAATATTAATAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACAATTATAATATTAATAATA  50

seq1  ATATCTTAAAAGTTTATCTTAAAAATTATTTGGATTTGGGAGGGTTATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTAAAAGTTTATCTTAAAAATTATTTGGATTTGGGAGGGTTATGA  100

seq1  TTCCAGTTCAGAAGTTAATAATCAACAGAACAAAATTTAATATCTATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTTCAGAAGTTAATAATCAACAGAACAAAATTTAATATCTATATT  150

seq1  GTTGGCCTTTATGAATATTATCGAACCTCCCCTGCTCCAGATGCTGATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCCTTTATGAATATTATCGAACCTCCCCTGCTCCAGATGCTGATTG  200

seq1  GGTGGCAGAGACACACCGAGTCCCTGCCCAGTTCTCTTGGAGCCTTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCAGAGACACACCGAGTCCCTGCCCAGTTCTCTTGGAGCCTTTCAT  250

seq1  TCCTTAAAGAGAGCTGCAGAACTAATTCTGGGTGCACTGACAGTGAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAAGAGAGCTGCAGAACTAATTCTGGGTGCACTGACAGTGAGGAA  300

seq1  GGATTAGAGA  310
      ||||||||||
seq2  GGATTAGAGA  310

seq1: chr8_118867171_118867707
seq2: B6Ng01-259J11.g_68_604

seq1  GAATTCAGTAAAAAAAAAAAAAAAAAACAAAAACAAAAAACAAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAAAAAAAAAAAAAAAAAACAAAAACAAAAAACAAAAAAAAA  50

seq1  ATGCCTTCTAGACAAATTGCATTCACCCAAGACATGCTTTGGGGGACCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTCTAGACAAATTGCATTCACCCAAGACATGCTTTGGGGGACCAC  100

seq1  TTGACAAGAGGCTCTCTAGGGTTCTTTTCTATCAACCACATGTCCACTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAGAGGCTCTCTAGGGTTCTTTTCTATCAACCACATGTCCACTGT  150

seq1  GGGTATGGTGATTTTTTTTTCTCAAGATTCCTCACCCTCCTCAAGGGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATGGTGATTTTTTTTTCTCAAGATTCCTCACCCTCCTCAAGGGGTC  200

seq1  AACCACTGGCCCTGGGGGAATGTAGATCATCACCAGGCTCAAGGCCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTGGCCCTGGGGGAATGTAGATCATCACCAGGCTCAAGGCCTGTG  250

seq1  CTCAGGAGACCATGATCAACACCACAAAGCCTGCAGAGGAGGCTTTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAGACCATGATCAACACCACAAAGCCTGCAGAGGAGGCTTTTATT  300

seq1  GGTCCCCCAAAGCATTAGTGCCAGGGCCTGTGATGGGGGAGGGGAGAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCCCAAAGCATTAGTGCCAGGGCCTGTGATGGGGGAGGGGAGAAGG  350

seq1  GGCCTTGGGTGGAAACAACCTTCTACGCTCAAAAGAACCAACTGTGCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGGGTGGAAACAACCTTCTACGCTCAAAAGAACCAACTGTGCTGA  400

seq1  TTCAAAAAAAAAAAAAATTTTTTTTTCAAAAGTGCCTGTGGGTAAATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAAAAAAAAAAATTTTTTTTTCAAAAGTGCCTGTGGGTAAATTTG  450

seq1  AGCTGCCCACAGCTCCCCAGGGGCATCGAGAACTTGCTGCCGAGCCATTT  500
      |||||||||||||||||||||||||| |||||||||||||| ||||||||
seq2  AGCTGCCCACAGCTCCCCAGGGGCATTGAGAACTTGCTGCCAAGCCATTT  500

seq1  CTGTGGATTTCAGTCAAATCCTAATTTTAGTGTTCAT  537
      |||||||||||| |||||||| | ||||||||||| |
seq2  CTGTGGATTTCATTCAAATCCAATTTTTAGTGTTCTT  537