BAC Information

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BAC

Clone NameB6Ng01-260M04
Chromosome8 (Build37)
Map Location 67,918,752 - 68,052,091
singlet/doubletdoublet
Overlap geneLOC100040967
Upstream geneCpe, Sc4mol, Klhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1
Downstream geneMarch1, LOC100040986, 1810029B16Rik, Tktl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260M04.bB6Ng01-260M04.g
ACCGA065603GA065604
length1,1231,176
definitionB6Ng01-260M04.b B6Ng01-260M04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,050,957 - 68,052,091)(67,918,752 - 67,919,961)
sequence
gaattctggtcttcactacagtagataactgtaggcataactactattgt
gcctggttatcctatcagaaagcattttaggaactgatacagaacaattc
ttcttatgtttgtctgaatttttattgctggaacaaattgtctcaggaca
aatgaaacttccttcattcttggaaaccatgagacaaaacagtagagcat
tctaccactgtggaagaggaggggaaaggggtacagagtacaactatcag
cttctcctacagcaggtgcatcacagtggtggtggctgtcatcaatacac
aacattttcacacaccttttcttatgattgtgtgaatacggtgaaaaaat
cttccatggtttgagaaagtcttcagaagttctatccaatgatatgaaga
actgtgccattgtctacttaataaaatgactaagatgagttgatatatcc
aacaactaacagagtttgagagccaagatcaatccaatgcagtgccatca
gggacagttctgcattctttggctgtttcagcttttcatgatatctaaga
ataaggaattatgagtcaaatgggtctttgtttcctggttctagcaataa
caacgagctgtgagaatcctggaacactgaaactcaccttaccttctcca
ggtcctaaacgtcatacttgtctgtctccttgccctgaagtcttctcatt
taggggatcttcccctaaattcaagctaggtttttgaccaggaaaaggtg
ctgcttgtgttatgtctaaatcttcatcaaaaggaagtgtattccagcag
aggttttctgctcgtgcctgcttgttgtttaagagtaaacaagaagataa
attccaaaggcaagcaaagaaatcacctacagctctctgtaataaaatca
gtactgccttttcccctgcttttccacctattcccctctctcttccttct
gcagatgtaagatgtaagtgattgatttgcacaggtgtgcagttaaatca
acccattctgccacctcagtgttcaacccctttccatgtcgtatctcaac
tatgagctgatagatggattctaaaaacagtgtctggcaaaggagatgtc
cccaggcaaatgcttgatagttt

gaattctcacctgaggcactggcatagcctcacaagagacagctatatct
gggtcctttcagcaaaatcttgctaatgtatgcaatggtgtcagcatttg
gaggctgattatgggatggttccctgggtatggcagtctctagatggtcc
atcctttcgtctcagctccaaactgtgtctctgtaactccttccctgggt
gtgttgttcccaattctaagaaggggcaaagtgtccataccttggtcttc
gttcttcttgagtttcatgtgttttgcagattgtatctttcgtattttat
gtttctgggctaatatccacttatcagtgagtacatatcatgtgagttct
tttgtgattgggttacctcactcaggatgatgccctccaggtccatccat
ttggctaggaatttcataaattcattctttttaatagctgagtagtactc
cattgtgtaaatgtaccacttagctcacccattgactgatctttccgtat
cctacctcccgccatgctctaagctacctctggtgactgctatgctcata
ttcacaacttttctgtgaaaatcttagttttatataattcatattttaca
ttttccagttttatgattaaaagcatggacatttttattacatcacttca
ttgcactgagattctctgcagctcattaaaaataatggagtaaatctctt
tactccaaacaataaggtaacatatgttgtatgatgctgaaggagttaaa
aatacttctatttttatgacatttgcctttgtggttgccaacagttttgt
agaagcagatttagaggttgctaatgaaaatctggactatggatttggat
aaagaaatttcacttttagttttatatacctatacaatgcttgcatttta
ttatggcagtaatatttggctttataatttaaaagtggaatttagtttat
aaaagctcagttgtttccctaggtgagagtttaaagcagatgcagagaaa
gtgagtattttttatatcatcatgtgcattgtgtactctctggtgcttgc
ctcatctcacctcacaatgtggtgagagacagctgcagcagcatgcaatc
ccaaatgctgggcctaactcaggcaggaaggctctcgattgagaactgag
tatctagtggaccatccgccaaagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_68050957_68052091
seq2: B6Ng01-260M04.b_42_1164 (reverse)

seq1  AAACTATTCAAAGCATTTGCCTGGGGACATCTCCTTTGGCAGACAACCTG  50
      |||||||   |||||||||||||||||||||||||||| ||||||  |||
seq2  AAACTAT--CAAGCATTTGCCTGGGGACATCTCCTTTGCCAGACA--CTG  46

seq1  TTTTTAGAATCCAATTCCTATCAGCTCATAGTTGAGATTAACGACATGGA  100
      |||||||||||||    |||||||||||||||||||||  ||||||||||
seq2  TTTTTAGAATCCA---TCTATCAGCTCATAGTTGAGAT--ACGACATGGA  91

seq1  AAGGGGTTGAACACTTGAGGTGGCAGAATGGG-TGATTTAACTGCAACAC  149
      |||||||||||||| ||||||||||||||||| |||||||||||| ||||
seq2  AAGGGGTTGAACAC-TGAGGTGGCAGAATGGGTTGATTTAACTGC-ACAC  139

seq1  CTGTGCAAATCAATCCACCTTACATCTTACATCTTGCAGAAGGAAGAGAG  199
      |||||||||||||||   ||||||||||||||| ||||||||||||||||
seq2  CTGTGCAAATCAATC--ACTTACATCTTACATC-TGCAGAAGGAAGAGAG  186

seq1  AGGGGAATAGGTGGAAAAGCAGGGGAAAAGGCAGTACTGATTTTATTACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAATAGGTGGAAAAGCAGGGGAAAAGGCAGTACTGATTTTATTACA  236

seq1  GAGAGCTGTAGGTGATTTCTTTGCTTGCCTTTGGAATTTATCTTCTTGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTGTAGGTGATTTCTTTGCTTGCCTTTGGAATTTATCTTCTTGTT  286

seq1  TACTCTTAAACAACAAGCAGGCACGAGCAGAAAACCTCTGCTGGAATACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTAAACAACAAGCAGGCACGAGCAGAAAACCTCTGCTGGAATACA  336

seq1  CTTCCTTTTGATGAAGATTTAGACATAACACAAGCAGCACC-TTTCCTGG  398
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTTCCTTTTGATGAAGATTTAGACATAACACAAGCAGCACCTTTTCCTGG  386

seq1  TCAAAAACCTAGCTTGAATTTAGGGGAAGATCCCCTAAATGAGAAGACTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAACCTAGCTTGAATTTAGGGGAAGATCCCCTAAATGAGAAGACTT  436

seq1  CAGGGCAAGGAGACAGACAAGTATGACGTTTAGGACCTGGAGAAGGTAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAAGGAGACAGACAAGTATGACGTTTAGGACCTGGAGAAGGTAAG  486

seq1  GTGAGTTTCAGTGTTCCAGGATTCTCACAGCTCGTTGTTATTGCTAGAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTTCAGTGTTCCAGGATTCTCACAGCTCGTTGTTATTGCTAGAAC  536

seq1  CAGGAAACAAAGACCCATTTGACTCATAATTCCTTATTCTTAGATATCAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAACAAAGACCCATTTGACTCATAATTCCTTATTCTTAGATATCAT  586

seq1  GAAAAGCTGAAACAGCCAAAGAATGCAGAACTGTCCCTGATGGCACTGCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCTGAAACAGCCAAAGAATGCAGAACTGTCCCTGATGGCACTGCA  636

seq1  TTGGATTGATCTTGGCTCTCAAACTCTGTTAGTTGTTGGATATATCAACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTGATCTTGGCTCTCAAACTCTGTTAGTTGTTGGATATATCAACT  686

seq1  CATCTTAGTCATTTTATTAAGTAGACAATGGCACAGTTCTTCATATCATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTAGTCATTTTATTAAGTAGACAATGGCACAGTTCTTCATATCATT  736

seq1  GGATAGAACTTCTGAAGACTTTCTCAAACCATGGAAGATTTTTTCACCGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGAACTTCTGAAGACTTTCTCAAACCATGGAAGATTTTTTCACCGT  786

seq1  ATTCACACAATCATAAGAAAAGGTGTGTGAAAATGTTGTGTATTGATGAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACACAATCATAAGAAAAGGTGTGTGAAAATGTTGTGTATTGATGAC  836

seq1  AGCCACCACCACTGTGATGCACCTGCTGTAGGAGAAGCTGATAGTTGTAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCACCACTGTGATGCACCTGCTGTAGGAGAAGCTGATAGTTGTAC  886

seq1  TCTGTACCCCTTTCCCCTCCTCTTCCACAGTGGTAGAATGCTCTACTGTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACCCCTTTCCCCTCCTCTTCCACAGTGGTAGAATGCTCTACTGTT  936

seq1  TTGTCTCATGGTTTCCAAGAATGAAGGAAGTTTCATTTGTCCTGAGACAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCATGGTTTCCAAGAATGAAGGAAGTTTCATTTGTCCTGAGACAA  986

seq1  TTTGTTCCAGCAATAAAAATTCAGACAAACATAAGAAGAATTGTTCTGTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCCAGCAATAAAAATTCAGACAAACATAAGAAGAATTGTTCTGTA  1036

seq1  TCAGTTCCTAAAATGCTTTCTGATAGGATAACCAGGCACAATAGTAGTTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCCTAAAATGCTTTCTGATAGGATAACCAGGCACAATAGTAGTTA  1086

seq1  TGCCTACAGTTATCTACTGTAGTGAAGACCAGAATTC  1135
      |||||||||||||||||||||||||||||||||||||
seq2  TGCCTACAGTTATCTACTGTAGTGAAGACCAGAATTC  1123


seq1: chr8_67918752_67919961
seq2: B6Ng01-260M04.g_64_1239

seq1  GAATTCTCACCTGAGGCACTGGCATAGCCTCACAAGAGACAGCTATATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGCACTGGCATAGCCTCACAAGAGACAGCTATATCT  50

seq1  GGGTCCTTTCAGCAAAATCTTGCTAATGTATGCAATGGTGTCAGCATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTTTCAGCAAAATCTTGCTAATGTATGCAATGGTGTCAGCATTTG  100

seq1  GAGGCTGATTATGGGATGGTTCCCTGGGTATGGCAGTCTCTAGATGGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGATTATGGGATGGTTCCCTGGGTATGGCAGTCTCTAGATGGTCC  150

seq1  ATCCTTTCGTCTCAGCTCCAAACTGTGTCTCTGTAACTCCTTCCCTGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTCGTCTCAGCTCCAAACTGTGTCTCTGTAACTCCTTCCCTGGGT  200

seq1  GTGTTGTTCCCAATTCTAAGAAGGGGCAAAGTGTCCATACCTTGGTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTTCCCAATTCTAAGAAGGGGCAAAGTGTCCATACCTTGGTCTTC  250

seq1  GTTCTTCTTGAGTTTCATGTGTTTTGCAGATTGTATCTTTCGTATTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCTTGAGTTTCATGTGTTTTGCAGATTGTATCTTTCGTATTTTAT  300

seq1  GTTTCTGGGCTAATATCCACTTATCAGTGAGTACATATCATGTGAGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGGGCTAATATCCACTTATCAGTGAGTACATATCATGTGAGTTCT  350

seq1  TTTGTGATTGGGTTACCTCACTCAGGATGATGCCCTCCAGGTCCATCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGATTGGGTTACCTCACTCAGGATGATGCCCTCCAGGTCCATCCAT  400

seq1  TTGGCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTGAGTAGTACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTGAGTAGTACTC  450

seq1  CATTGTGTAAATGTACCACTTAGCTCACCCATTGACTGATCTTTCCGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGTAAATGTACCACTTAGCTCACCCATTGACTGATCTTTCCGTAT  500

seq1  CCTACCTCCCGCCATGCTCTAAGCTACCTCTGGTGACTGCTATGCTCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTCCCGCCATGCTCTAAGCTACCTCTGGTGACTGCTATGCTCATA  550

seq1  TTCACAACTTTTCTGTGAAAATCTTAGTTTTATATAATTCATATTTTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAACTTTTCTGTGAAAATCTTAGTTTTATATAATTCATATTTTACA  600

seq1  TTTTCCAGTTTTATGATTAAAAGCATGGACATTTTTATTACATCACTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAGTTTTATGATTAAAAGCATGGACATTTTTATTACATCACTTCA  650

seq1  TTGCACTGAGATTCTCTGCAGCTCATTAAAAATAATGGAGTAAATCTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTGAGATTCTCTGCAGCTCATTAAAAATAATGGAGTAAATCTCTT  700

seq1  TACTCCAAACAATAAGGTAACATATGTTGTATGATGCTGAAGGAGTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCAAACAATAAGGTAACATATGTTGTATGATGCTGAAGGAGTTAAA  750

seq1  AATACTTCTATTTTTATGACATTTGCCTTTGTGGTTGCCAACAGTTTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTCTATTTTTATGACATTTGCCTTTGTGGTTGCCAACAGTTTTGT  800

seq1  AGAAGCAGATTTAGAGGTTGCTAATGAAAATCTGGACTATGGATTTGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGATTTAGAGGTTGCTAATGAAAATCTGGACTATGGATTTGGAT  850

seq1  AAAGAAATTTCACTTTTAGTTTTATATACCTATACAATGCTTGCATTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATTTCACTTTTAGTTTTATATACCTATACAATGCTTGCATTTTA  900

seq1  TTTATGGCAGTAATATTTGGCTTTTATAATTTAAAAGTGGAATTTAAGTT  950
       |||||||||||||||||||| ||||||||||||||||||||||| ||||
seq2  -TTATGGCAGTAATATTTGGC-TTTATAATTTAAAAGTGGAATTT-AGTT  947

seq1  TATAAAAGCTCAGTTGTTTTTCCCCTAGGGTGAGAGGTTTAAAGCAGATG  1000
      |||||||||||||||||||   ||||| ||||||| ||||||||||||||
seq2  TATAAAAGCTCAGTTGTTT---CCCTA-GGTGAGA-GTTTAAAGCAGATG  992

seq1  CAGGAGAAAGTGAAGGTATTTTTATAT-TCATCAATGTGCATTTGTGGTA  1049
      || ||||||||||  |||||||| ||| ||||| ||||||| |||| |||
seq2  CA-GAGAAAGTGA--GTATTTTT-TATATCATC-ATGTGCA-TTGT-GTA  1035

seq1  CTCTCT-GTGCTGGCTTCATCTCAACTCCACAATGTGTGAAGAGACAGCT  1098
      |||||| ||||| || |||||||| || |||||||||   ||||||||||
seq2  CTCTCTGGTGCTTGCCTCATCTCACCT-CACAATGTGGTGAGAGACAGCT  1084

seq1  GCAGCAGCATGCATTCCCACATGCTTGGGCTTTAACACCAGGCAAGAAAG  1148
      ||||||||||||| ||||| ||||| || |  ||||  |||||| |||  
seq2  GCAGCAGCATGCAATCCCAAATGCTGGGCC--TAAC-TCAGGCAGGAA--  1129

seq1  GGCTCTTCTCCCAGATATAAGAAGGAACTCTGATGATCCTAGTTTGTACC  1198
      ||||||       ||| | ||||      ||||  || ||||  || |||
seq2  GGCTCT------CGAT-TGAGAA------CTGAGTAT-CTAG--TGGACC  1163

seq1  AT-CGCCAAAGAC  1210
      || ||||||||||
seq2  ATCCGCCAAAGAC  1176


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