BAC Information

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BAC

Clone NameB6Ng01-261J23
Chromosome8 (Build37)
Map Location 99,247,338 - 99,248,508
singlet/doubletsinglet
Overlap genenone
Upstream geneCnot1, LOC100041953, LOC100041088, BC031853, LOC100041972, Got2, LOC667445
Downstream geneLOC333331, LOC546090, LOC636859
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261J23.bB6Ng01-261J23.g
ACCGA066247GA066248
length1,2001,155
definitionB6Ng01-261J23.b B6Ng01-261J23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaaaacactttcttcttgatttcatattactagagcagaggcaa
gggatactgttatggcttgcaaagcctgtgcccacctattgcctcaggcg
agtgtgggagtaaacccttgcagcctgcttcccctccacatttggcaaat
ggatgtgactcatttttcagaatttggtaaactgcagtttgttcatgttt
ctgtagatacagcctctggggtgttgtttgcctccctgcatactggtgaa
aaggcacgctatgtcattgccctttgctttgaggcatggggtgcatgggg
tcagcccagagagcttaagactgataatggacctgcttatacttcagctt
tttttgttttgttttgtaaaatgatgggtgtccacttggtgcacggtata
ccctacaatagtcagggccagggcatcgcagtctgaaagagtgtctaata
aaacagaatgagggattagcctctggggctactcctagggagagaatagc
cattgctctctttagcttgaattttttgaataaagataaaaatgatttga
ctgctgcagaacctttgccaatcctgaggcatcgtacaaaggcacagtca
tgtggaaggatgttctgaggggacgatggcatgggcccaatcctgtgttg
gtctggacgagagggtctgtttgtgtgtttccacaggatcatcgccagcc
actgtgggttccagagcgattgacaagggtagttcaagatggacagaggt
gccctgatgaagctgcccctgggggtgatgatgctgcctgcagtgatgac
tgaagatctaagatgggcccccttttgtaggggtattcaagatttgctgc
ccccatggaccggctgccggaccaggaaagctgcgtgggccgtgaaaaaa
tattttattttttcctcttatattagtaccagtcataatcaaacgttttc
aggatttaattggatgtatcaaaatccagcccagagaggggcagcatcct
ttatgtttggctgttgtgtgggataacttggagtgtacagatcttttctt
ctgtgagtatgtgctggtgggcatggggaaatactagccttttatgaatg
atctgatttattgagtcctttactatccaattgctttaggagacgtaatt
ctttcagcatggcctgatagtgtctgggacatctctttggtaattcatga


gaattccagtagaacttacgttttgtagggactgggagcatatgttgaac
gtccttccttgattaacctagcaaaaattatctagggaaaaaaaagacct
attggcaaaaagtccttgatctgaaggatagaaaggaaaatatggaggat
taaaaactgaatatgctcaggggtatacaatgctttacagaatcgctgta
acaatatttaactgccaaggaagagatggggtggctcgatgctttctcat
tttcacaaaaccactgtgaatcagcagatgaggctttgaatgtcaggcta
aggagttggggcatcacactgacttaaggcctgcaggagaaaaaagaatt
acacttttaggaacggcagtggttggagctgcagggctgctgctacactg
tcttgtccatgtctttaaacctgggtttacaatgctattgaacatggaga
atgagatcaagctcataggagtagttgacagaaacctacatgctgatcag
cctgtgaaagcagcagccaagttgaactgaagcatatttctataagcaat
tctttaacccaaatacagaaatgagaggaagactcacagagagacagaga
ctcagagaccaagagaaactgggcgagattcaaagtggacacatttactg
tttgaagctcaaaatgatattccacagggaatatatatatatatatctca
gaatcagccactttaagcataagaattgtacttaagaacccatacatgct
ctattcctacagaaccctcgttctcactggttttgtgaaaatagaaaatc
atttagacaggggtccgtgcctttgacaaatgtcttagtcagggtttcta
ttcctgcacaaacatcatgaccaagaagcagttgaggaggaaagggttta
ttcagcttacattttccacattgaggttcatcaccaacggatgtcaggac
tggaaactcaagcaggtcagaagcagagctgatgcagaggccatggaggg
atgttctttactggctgcttcccctggcctgctcacctgctctcttatag
acccaggactctgagccagggatgcaccaccacagggtccttcccttgat
cactaatgaaaaatgcttacgctggatccatggagcaattttctctactg
aagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_99247338_99248508
seq2: B6Ng01-261J23.g_66_1220 (reverse)

seq1  AGCTTCAGTAGAGAAAATGCCTCCATGAGATCCAGCTGTAAGGCATTTTC  50
      ||||||||||||||||||  ||||||| |||||||| |||| ||||||| 
seq2  AGCTTCAGTAGAGAAAATTGCTCCATG-GATCCAGC-GTAA-GCATTTT-  46

seq1  TCAATTAGTGATCAAGGGGGAAGGGCCCCTTGTGTGTGGTGCCATCCCTG  100
      || ||||||||||||  ||||||| |||  |||| |||||| ||||||| 
seq2  TC-ATTAGTGATCAA--GGGAAGGACCC--TGTG-GTGGTG-CATCCCT-  88

seq1  GGCTCAGAGTCCTGGGTTCTATAAGAGAGCAGGTTGAGCAAGCCAGGGGA  150
      |||||||||||||||| |||||||||||||||| |||||| |||||||||
seq2  GGCTCAGAGTCCTGGG-TCTATAAGAGAGCAGG-TGAGCAGGCCAGGGGA  136

seq1  AGCAAGCCAGTAAAGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCT  200
      ||| |||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGC-AGCCAGTAAAGAACATCCCTCCATGGCCTCTGCATCAGCT-CTGCT  184

seq1  TCCTGACCTGCTTGAG-TTCCAGTCCTGACATCCGTTGGTGATGAACCTC  249
      | |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  T-CTGACCTGCTTGAGTTTCCAGTCCTGACATCCGTTGGTGATGAACCTC  233

seq1  AATGTGGAAAATGTAAGCTGAATAAACCCTTTCCTCCTCAACTGCTTCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGAAAATGTAAGCTGAATAAACCCTTTCCTCCTCAACTGCTTCTT  283

seq1  GGTCATGATGTTTGTGCAGGAATAGAAACCCTGACTAAGACATTTGTCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATGATGTTTGTGCAGGAATAGAAACCCTGACTAAGACATTTGTCAA  333

seq1  AGGCACGGACCCCTGTCTAAATGATTTTCTATTTTCACAAAACCAGTGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACGGACCCCTGTCTAAATGATTTTCTATTTTCACAAAACCAGTGAG  383

seq1  AACGAGGGTTCTGTAGGAATAGAGCATGTATGGGTTCTTAAGTACAATTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAGGGTTCTGTAGGAATAGAGCATGTATGGGTTCTTAAGTACAATTC  433

seq1  TTATGCTTAAAGTGGCTGATTCTGAGATATATATATATATATTCCCTGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTTAAAGTGGCTGATTCTGAGATATATATATATATATTCCCTGTG  483

seq1  GAATATCATTTTGAGCTTCAAACAGTAAATGTGTCCACTTTGAATCTCGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCATTTTGAGCTTCAAACAGTAAATGTGTCCACTTTGAATCTCGC  533

seq1  CCAGTTTCTCTTGGTCTCTGAGTCTCTGTCTCTCTGTGAGTCTTCCTCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTCTCTTGGTCTCTGAGTCTCTGTCTCTCTGTGAGTCTTCCTCTC  583

seq1  ATTTCTGTATTTGGGTTAAAGAATTGCTTATAGAAATATGCTTCAGTTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTATTTGGGTTAAAGAATTGCTTATAGAAATATGCTTCAGTTCA  633

seq1  ACTTGGCTGCTGCTTTCACAGGCTGATCAGCATGTAGGTTTCTGTCAACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCTGCTGCTTTCACAGGCTGATCAGCATGTAGGTTTCTGTCAACT  683

seq1  ACTCCTATGAGCTTGATCTCATTCTCCATGTTCAATAGCATTGTAAACCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTATGAGCTTGATCTCATTCTCCATGTTCAATAGCATTGTAAACCC  733

seq1  AGGTTTAAAGACATGGACAAGACAGTGTAGCAGCAGCCCTGCAGCTCCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTAAAGACATGGACAAGACAGTGTAGCAGCAGCCCTGCAGCTCCAA  783

seq1  CCACTGCCGTTCCTAAAAGTGTAATTCTTTTTTCTCCTGCAGGCCTTAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCCGTTCCTAAAAGTGTAATTCTTTTTTCTCCTGCAGGCCTTAAG  833

seq1  TCAGTGTGATGCCCCAACTCCTTAGCCTGACATTCAAAGCCTCATCTGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTGATGCCCCAACTCCTTAGCCTGACATTCAAAGCCTCATCTGCT  883

seq1  GATTCACAGTGGTTTTGTGAAAATGAGAAAGCATCGAGCCACCCCATCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCACAGTGGTTTTGTGAAAATGAGAAAGCATCGAGCCACCCCATCTC  933

seq1  TTCCTTGGCAGTTAAATATTGTTACAGCGATTCTGTAAAGCATTGTATAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGGCAGTTAAATATTGTTACAGCGATTCTGTAAAGCATTGTATAC  983

seq1  CCCTGAGCATATTCAGTTTTTAATCCTCCATATTTTCCTTTCTATCCTTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGCATATTCAGTTTTTAATCCTCCATATTTTCCTTTCTATCCTTC  1033

seq1  AGATCAAGGACTTTTTGCCAATAGGTCTTTTTTTTCCCTAGATAATTTTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAGGACTTTTTGCCAATAGGTCTTTTTTTTCCCTAGATAATTTTT  1083

seq1  GCTAGGTTAATCAAGGAAGGACGTTCAACATATGCTCCCAGTCCCTACAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGTTAATCAAGGAAGGACGTTCAACATATGCTCCCAGTCCCTACAA  1133

seq1  AACGTAAGTTCTACTGGAATTC  1171
      ||||||||||||||||||||||
seq2  AACGTAAGTTCTACTGGAATTC  1155


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