BAC Information

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BAC

Clone NameB6Ng01-262C18
Chromosome8 (Build37)
Map Location 26,147,391 - 26,308,951
singlet/doubletdoublet
Overlap geneHtra4, Plekha2, LOC100042390, Tacc1
Upstream geneZmat4, 1810011O10Rik, Indol1, Indo, Adam18, Adam3, Adam5, Adam32, Adam9, Tm2d2
Downstream geneLOC670822, LOC100040998, Fgfr1, D030041N04Rik, LOC100042416, Whsc1l1, Ppapdc1, Bag4, Lsm1, Star, Ash2l, Kcnu1, Hgsnat, 4930444A02Rik, Fnta, Hook3, 1700047A11Rik, Rnf170, Thap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262C18.bB6Ng01-262C18.g
ACCGA066659GA066660
length1,135114
definitionB6Ng01-262C18.b B6Ng01-262C18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,147,391 - 26,148,536)(26,308,838 - 26,308,951)
sequence
gaattccagcatgaactgtgaaatcctcacatgtgaaggctctgactcag
cagctctctcaggtactcacatctggctcgatcttaatcagtgcaaggtc
cagtttatggtcgatgtctttgacggtggcttcataccgggccccgctct
ggagctctacctggatcttctgctggttggtgaggacgtgggcattggtg
acaatgagcccatcctcagacactatgaacccagagccgctggaggaagg
gatttcctggttggtgagaggtgatctgttccggaacaagtcagtagcgt
gagcagaagggagggaaatcagggaatccagcctttgtgtgtgagtcgca
ggaagcctcacgtttatcagctacgtttccagttttctcatgcatttact
cttgccttacccacttccatgtgctttgtgagctgcctgaagctcgtcct
ggccatcttttctgaacacaactgagatctgggtccaggatggtgtctcc
tcctttagatcagtgtgggaacctgtgtgtctgtcatctgcagcgaacag
gccaaacctggtgctaaccctgtgctcacactactgccacagcctcagaa
tctagctcttagttcccactaccaactggcgttgtgactcagaacaaact
aagtttgctctccatttgggtttccttgcatgcaagcgagtgctaaggct
aaacaagcccaccaaatgctcactactagctcctacagtcagccttttag
ttttgctgtgggataccggggagaaagaaacaccagtcaccaatacgcac
tgctgtagcttcaatttagaagccagaatccttgcgcttggctctttgct
ctttagcgaaataactcttagcaagtcaggtctcctgcaggctttgcgga
attctactgcccacctacaccccagccaactctttgaatctgtgtttcct
cacagcggtttaatggtcagaaatctggcaaccagcagtgaggtagtgat
cctagatgggaccttacctgcggacagctgcaagtgaccacagacgcgcc
accttctccacactgcggcgatgagtgtactttctcggaccgccctgctc
ttgtggttcctgtgaataaacgttccacggtgagt
ctttcagcaaagggaacagtgtttgcaaagaagcatcctatgtgtggtga
ggccctgggctgtggagtctcacctgttctggaggggcaggggttgggag
gtgggagtgtgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_26147391_26148536
seq2: B6Ng01-262C18.b_47_1181

seq1  GAATTCCAGCATGAACTGTGAAATCCTCACATGTGAAGGCTCTGACTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCATGAACTGTGAAATCCTCACATGTGAAGGCTCTGACTCAG  50

seq1  CAGCTCTCTCAGGTACTCACATCTGGCTCGATCTTAATCAGTGCAAGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTCTCAGGTACTCACATCTGGCTCGATCTTAATCAGTGCAAGGTC  100

seq1  CAGTTTATGGTCGATGTCTTTGACGGTGGCTTCATACCGGGCCCCGCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTATGGTCGATGTCTTTGACGGTGGCTTCATACCGGGCCCCGCTCT  150

seq1  GGAGCTCTACCTGGATCTTCTGCTGGTTGGTGAGGACGTGGGCATTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCTACCTGGATCTTCTGCTGGTTGGTGAGGACGTGGGCATTGGTG  200

seq1  ACAATGAGCCCATCCTCAGACACTATGAACCCAGAGCCGCTGGAGGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAGCCCATCCTCAGACACTATGAACCCAGAGCCGCTGGAGGAAGG  250

seq1  GATTTCCTGGTTGGTGAGAGGTGATCTGTTCCGGAACAAGTCAGTAGCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCTGGTTGGTGAGAGGTGATCTGTTCCGGAACAAGTCAGTAGCGT  300

seq1  GAGCAGAAGGGAGGGAAATCAGGGAATCCAGCCTTTGTGTGTGAGTCGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAAGGGAGGGAAATCAGGGAATCCAGCCTTTGTGTGTGAGTCGCA  350

seq1  GGAAGCCTCACGTTTATCAGCTACGTTTCCAGTTTTCTCATGCATTTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCTCACGTTTATCAGCTACGTTTCCAGTTTTCTCATGCATTTACT  400

seq1  CTTGCCTTACCCACTTCCATGTGCTTTGTGAGCTGCCTGAAGCTCGTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTTACCCACTTCCATGTGCTTTGTGAGCTGCCTGAAGCTCGTCCT  450

seq1  GGCCATCTTTTCTGAACACAACTGAGATCTGGGTCCAGGATGGTGTCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCTTTTCTGAACACAACTGAGATCTGGGTCCAGGATGGTGTCTCC  500

seq1  TCCTTTAGATCAGTGTGGGAACCTGTGTGTCTGTCATCTGCAGCGAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAGATCAGTGTGGGAACCTGTGTGTCTGTCATCTGCAGCGAACAG  550

seq1  GCCAAACCTGGTGCTAACCCTGTGCTCACACTACTGCCACAGCCTCAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAACCTGGTGCTAACCCTGTGCTCACACTACTGCCACAGCCTCAGAA  600

seq1  TCTAGCTCTTAGTTCCCACTACCAACTGGCGTTGTGACTCAGAACAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTCTTAGTTCCCACTACCAACTGGCGTTGTGACTCAGAACAAACT  650

seq1  AAGTTTGCTCTCCATTTGGGTTTCCTTGCATGCAAGCGAGTGCTAAGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGCTCTCCATTTGGGTTTCCTTGCATGCAAGCGAGTGCTAAGGCT  700

seq1  AAACAAGCCCACCAAATGCTCACTACTAGCTCCTACAGTCAGCC-TTTAG  749
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAACAAGCCCACCAAATGCTCACTACTAGCTCCTACAGTCAGCCTTTTAG  750

seq1  TTTTGCTGTGGGATACCGGGGAGAAAGAAACACCAGTCACCAATACGCAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTGTGGGATACCGGGGAGAAAGAAACACCAGTCACCAATACGCAC  800

seq1  TGCTGTAGCTTCAATTTAGAAGCCAGAATCCTTGCGCTTGGCTCTTTGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTAGCTTCAATTTAGAAGCCAGAATCCTTGCGCTTGGCTCTTTGCT  850

seq1  CTTTAGCGAAATAACTCTTAGCAAGTCAGGTCTCCTGCAGGCTTTGCGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCGAAATAACTCTTAGCAAGTCAGGTCTCCTGCAGGCTTTGCGGA  900

seq1  ATTCTACTGCCCACCTACACCCCAGCCAACTCTTTGAATCTGTGTTTCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACTGCCCACCTACACCCCAGCCAACTCTTTGAATCTGTGTTTCCT  950

seq1  CACAGCGGTTTTAATGGTCAGAAATCTGGCAACCAGCAGGTGAGGTAGTT  999
      |||||||| ||||||||||||||||||||||||||||| ||||||||| |
seq2  CACAGCGG-TTTAATGGTCAGAAATCTGGCAACCAGCA-GTGAGGTAG-T  997

seq1  GATCCTAGATGGGACCTTTACCTGCGGAACAGCTGCAAGTGGACCACAGA  1049
      |||||||||||||||| |||||||||| |||||||||||| |||||||||
seq2  GATCCTAGATGGGACC-TTACCTGCGG-ACAGCTGCAAGT-GACCACAGA  1044

seq1  CGGCGCCACCTTCTCCACCACTGCGGCGATGAAGTTGTACTTTCTCCGGA  1099
      | ||||||||||||||| ||||||||||||||   |||||||||| ||||
seq2  C-GCGCCACCTTCTCCA-CACTGCGGCGATGA--GTGTACTTTCT-CGGA  1089

seq1  GCCGCCCTGCTCTTGTGGTCCCTGTGAATAAACGGTCCACGGTGAGT  1146
       |||||||||||||||||| |||||||||||||| ||||||||||||
seq2  -CCGCCCTGCTCTTGTGGTTCCTGTGAATAAACGTTCCACGGTGAGT  1135

seq1: chr8_26308838_26308951
seq2: B6Ng01-262C18.g_72_185 (reverse)

seq1  CCTCACACTCCCACCTCCCAACCCCTGCCCCTCCAGAACAGGTGAGACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACACTCCCACCTCCCAACCCCTGCCCCTCCAGAACAGGTGAGACTC  50

seq1  CACAGCCCAGGGCCTCACCACACATAGGATGCTTCTTTGCAAACACTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCCAGGGCCTCACCACACATAGGATGCTTCTTTGCAAACACTGTT  100

seq1  CCCTTTGCTGAAAG  114
      ||||||||||||||
seq2  CCCTTTGCTGAAAG  114