BAC Information

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BAC

Clone NameB6Ng01-263H23
Chromosome8 (Build37)
Map Location 26,162,181 - 26,298,602
singlet/doubletdoublet
Overlap genePlekha2, LOC100042390, Tacc1
Upstream geneZmat4, 1810011O10Rik, Indol1, Indo, Adam18, Adam3, Adam5, Adam32, Adam9, Tm2d2, Htra4
Downstream geneLOC670822, LOC100040998, Fgfr1, D030041N04Rik, LOC100042416, Whsc1l1, Ppapdc1, Bag4, Lsm1, Star, Ash2l, Kcnu1, Hgsnat, 4930444A02Rik, Fnta, Hook3, 1700047A11Rik, Rnf170, Thap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263H23.bB6Ng01-263H23.g
ACCGA067650GA067651
length8541,117
definitionB6Ng01-263H23.b B6Ng01-263H23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,162,181 - 26,163,027)(26,297,494 - 26,298,602)
sequence
gaattcagtaggggaaagagaaaaaagggagatggatgttcctaaaaccc
cacgcgggaaagctgcgaattttaaggctcagaatctcacatcagcctct
ccctgtactggctctgtggtcttctaggcagcccaggcggaggacttggc
tctagctgtctttgcgctgcttggaaatctgccttgctagctgctgtgac
ctcatagggattgggagagctccagatctgggggtggggggaaggtcctg
gtaagggaactgtcagaggccaaacaatggctttctctgtgcaggctgcc
tgtgcacctgtgccggcaaagggccctctatgcttctgtcttgtctgcac
acagtaatgtccatacataggcgggacttataaataccctccagagcaga
agtgaaaccatccaccagttctccttttctctgcttagttggagctctgc
agcccagtgcagctgctacagaggctggcatcctcccgcacctcccgcac
agcggatagacctgcttgtagtatcccagggtagggaagcatctaaccaa
caccctccttagaatgagatgggacactgggtgctggagggagcggaggc
atccactcacatttcacagagaggaaacgctggtctgggggtggacattt
acctgtacgtagaaacgtcctggaggtggttatgatttcaaaacaggttg
tccctcattaagagatcactaggcaaggagagagagagatacccattaca
ctaagcattgtgagaacttttttttttccacgttatttccctacagtttc
caggtcacccactaatgcaactcaagactttctcctttcttgtggattaa
ggca
gaattcaggacctctggaagagcagccagttttcttaaccactgagccat
ctgtccagcccgacagacatctctactcttagccttgtgtttatagtctg
ttcaccttttaataaaagcccacacccatgccctgcagagtgcatcttaa
ttctgtaccccgcctctcttaacccttgtgtctaaatgtttactgacata
gctttattgaactcaactttaaaaaatagaattgaaaaccatatccaaag
ttaggccaaagtagaggcaggaggattatgagtttgatgccagtgtaggc
tgtatacttgagaccctgttccccagaaagcaaataaagcgcaaagcccc
caaaacagaaggaggaggaggaggaggaggaaaaaagcgcctcgggctca
gcagccttcctaagctgcttcacatgcatggttattcttgtcagagaagg
aaatgatgatgtcatgtttttcacttctctgtaaatagaacctatctagc
acatgtgggcttcctccagaaggattcacgatccaaaagtggtgggtgcg
atccaccacctcaagcgtgggttcctgcaagtgacacacgagagctcact
tagaacgctttctgaacggcgaatctgcatacaggcctcatcggttcctg
caggacaggagccattttgttcttgtccagtagttttcgtgtgctccgag
tccggcgctgtcagcgaagcacttgcattgcaagtgtgaagatctgagtt
cgagcccccgaacacacagtgcatagtggtgtgcgcttcagggatggggg
tttggagagagaaggattcctctatggtcagtttagcctgccaataagct
tttatctcagcactcagaaaggcaacggtgattctgtgttgtcttttttg
tttgtatgtttgttgttcatttgtatagccctgactaccaggagcccttt
ctgtagatcaggctgggacttgaactcatagagatcaacctgcttctgcc
tgagtgcagcttaaggtggtgccaccaccgcactcagctctatctgagcc
cttgggagcctgctgtcagcaggcttcttaacagatggggaattgccctt
tagctctgagctctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_26162181_26163027
seq2: B6Ng01-263H23.b_48_901

seq1  GAATTCAGTAGGGGAAAGAGAAAAAAGGGAGATGGATGTTCCTAAAACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGGGGAAAGAGAAAAAAGGGAGATGGATGTTCCTAAAACCC  50

seq1  CACGCGGGAAAGCTGCGAATTTTAAGGCTCAGAATCTCACATCAGCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCGGGAAAGCTGCGAATTTTAAGGCTCAGAATCTCACATCAGCCTCT  100

seq1  CCCTGTACTGGCTCTGTGGTCTTCTAGGCAGCCCAGGCGGAGGACTTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTACTGGCTCTGTGGTCTTCTAGGCAGCCCAGGCGGAGGACTTGGC  150

seq1  TCTAGCTGTCTTTGCGCTGCTTGGAAATCTGCCTTGCTAGCTGCTGTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTGTCTTTGCGCTGCTTGGAAATCTGCCTTGCTAGCTGCTGTGAC  200

seq1  CTCATAGGGATTGGGAGAGCTCCAGATCTGGGGGTGGGGGGAAGGTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGGGATTGGGAGAGCTCCAGATCTGGGGGTGGGGGGAAGGTCCTG  250

seq1  GTAAGGGAACTGTCAGAGGCCAAACAATGGCTTTCTCTGTGCAGGCTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGGAACTGTCAGAGGCCAAACAATGGCTTTCTCTGTGCAGGCTGCC  300

seq1  TGTGCACCTGTGCCGGCAAAGGGCCCTCTATGCTTCTGTCTTGTCTGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACCTGTGCCGGCAAAGGGCCCTCTATGCTTCTGTCTTGTCTGCAC  350

seq1  ACAGTAATGTCCATACATAGGCGGGACTTATAAATACCCTCCAGAGCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAATGTCCATACATAGGCGGGACTTATAAATACCCTCCAGAGCAGA  400

seq1  AGTGAAACCATCCACCAGTTCTCCTTTTCTCTGCTTAGTTGGAGCTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAACCATCCACCAGTTCTCCTTTTCTCTGCTTAGTTGGAGCTCTGC  450

seq1  AGCCCAGTGCAGCTGCTACAGAGGCTGGCATCCTCCCGCACCTCCCGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGTGCAGCTGCTACAGAGGCTGGCATCCTCCCGCACCTCCCGCAC  500

seq1  AGCGGATAGACCTGCTTGTAGTATCCCAGGGTAGGGAAGCATCTAACCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGATAGACCTGCTTGTAGTATCCCAGGGTAGGGAAGCATCTAACCAA  550

seq1  CACCCTCCTTAGAATGAGATGGGACACTGGGTGCTGGAGGGAGCGGAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCCTTAGAATGAGATGGGACACTGGGTGCTGGAGGGAGCGGAGGC  600

seq1  ATCCACTCACA-TTCACAGAGAGGAAACGCTGGTCTGGGGGTGGACATTT  649
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTCACATTTCACAGAGAGGAAACGCTGGTCTGGGGGTGGACATTT  650

seq1  ACCTGTACGTAG-AACGTCCTGGAGGTGGTTATGATTTC-AAACAGGTTG  697
      |||||||||||| |||||||||||||||||||||||||| ||||||||||
seq2  ACCTGTACGTAGAAACGTCCTGGAGGTGGTTATGATTTCAAAACAGGTTG  700

seq1  TCCCTCATTAAGAGATCACTAGGCAAGGAGAGAGAGAGATA-CCATTACA  746
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCCCTCATTAAGAGATCACTAGGCAAGGAGAGAGAGAGATACCCATTACA  750

seq1  CTAAGCATTGTGAGAAC-TTTTTTTTTCCACGTTATTT-CCTACAGTTTT  794
      ||||||||||||||||| |||||||||||||||||||| |||||||||| 
seq2  CTAAGCATTGTGAGAACTTTTTTTTTTCCACGTTATTTCCCTACAGTTTC  800

seq1  CACGGTCACCCACTAATGCAACTCAAGACTTTCTCC-TTCCTGTGGA-TA  842
      || ||||||||||||||||||||||||||||||||| ||| |||||| ||
seq2  CA-GGTCACCCACTAATGCAACTCAAGACTTTCTCCTTTCTTGTGGATTA  849

seq1  AGGCA  847
      |||||
seq2  AGGCA  854

seq1: chr8_26297494_26298602
seq2: B6Ng01-263H23.g_63_1179 (reverse)

seq1  CAGAG-GCTCAGAGCT-AAGGGCA--TTCCCATCTGTT-AGA--GCTGCT  43
      ||||| |||||||||| |||||||  | |||||||||| |||   |||||
seq2  CAGAGAGCTCAGAGCTAAAGGGCAATTCCCCATCTGTTAAGAAGCCTGCT  50

seq1  GACAGCAGGCTCC--AAGGCTCAGAATAGAAGCTGAGTGCGGTGGT-GCA  90
      |||||||||||||  | ||||||| |||| |||||||||||||||| |||
seq2  GACAGCAGGCTCCCAAGGGCTCAG-ATAG-AGCTGAGTGCGGTGGTGGCA  98

seq1  CACCTTTAAGCTGGCACTCAGGGCAGAAGCAGGTTGATCTCTATGAGTTC  140
      |  | ||||||| ||||||| |||||||||||||||||||||||||||||
seq2  CCACCTTAAGCT-GCACTCA-GGCAGAAGCAGGTTGATCTCTATGAGTTC  146

seq1  AAGT-CCAGCCTGATCTACAGAAAGGGCTCCTGGTAGTCAGGGCTATACA  189
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCAGCCTGATCTACAGAAAGGGCTCCTGGTAGTCAGGGCTATACA  196

seq1  AATGAACAAACAAACATACAAACAAAAAAGACAACACAGAATCACCGTTG  239
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAC-AACAAACATACAAACAAAAAAGACAACACAGAATCACCGTTG  245

seq1  CC-TTCTGAGTGCTGAGATAAAAGCTTATTGGCAGGCTAAACTGACCATA  288
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTGAGTGCTGAGATAAAAGCTTATTGGCAGGCTAAACTGACCATA  295

seq1  GAGGAATCCTTCTCTCTCCAAA-CCCCATCCCTGAAGCGCACACCACTAT  337
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAGGAATCCTTCTCTCTCCAAACCCCCATCCCTGAAGCGCACACCACTAT  345

seq1  GCACTGTGTGTTCGGGGGCTCGAACTCAGATCTTCACACTTGCAATGCAA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTGTGTTCGGGGGCTCGAACTCAGATCTTCACACTTGCAATGCAA  395

seq1  GTGCTTCGCTGACAGCGCCGGACTCGGAGCACACGAAAACTACTGGACAA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCGCTGACAGCGCCGGACTCGGAGCACACGAAAACTACTGGACAA  445

seq1  GAACAAAATGGCTCCTGTCCTGCAGGAACCGATGAGGCCTGTATGCAGAT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAATGGCTCCTGTCCTGCAGGAACCGATGAGGCCTGTATGCAGAT  495

seq1  TCGCCGTTCAGAAAGCGTTCTAAGTGAGCTCTCGTGTGTCACTTGCAGGA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCGTTCAGAAAGCGTTCTAAGTGAGCTCTCGTGTGTCACTTGCAGGA  545

seq1  ACCCACGCTTGAGGTGGTGGATCGCACCCACCACTTTTGGATCGTGAATC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACGCTTGAGGTGGTGGATCGCACCCACCACTTTTGGATCGTGAATC  595

seq1  CTTCTGGAGGAAGCCCACATGTGCTAGATAGGTTCTATTTACAGAGAAGT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGAGGAAGCCCACATGTGCTAGATAGGTTCTATTTACAGAGAAGT  645

seq1  GAAAAACATGACATCATCATTTCCTTCTCTGACAAGAATAACCATGCATG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACATGACATCATCATTTCCTTCTCTGACAAGAATAACCATGCATG  695

seq1  TGAAGCAGCTTAGGAAGGCTGCTGAGCCCGAGGCGCTTTTTTCCTCCTCC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAGCTTAGGAAGGCTGCTGAGCCCGAGGCGCTTTTTTCCTCCTCC  745

seq1  TCCTCCTCCTCCTTCTGTTTTGGGGGCTTTGCGCTTTATTTGCTTTCTGG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCCTCCTTCTGTTTTGGGGGCTTTGCGCTTTATTTGCTTTCTGG  795

seq1  GGAACAGGGTCTCAAGTATACAGCCTACACTGGCATCAAACTCATAATCC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGGGTCTCAAGTATACAGCCTACACTGGCATCAAACTCATAATCC  845

seq1  TCCTGCCTCTACTTTGGCCTAACTTTGGATATGGTTTTCAATTCTATTTT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTCTACTTTGGCCTAACTTTGGATATGGTTTTCAATTCTATTTT  895

seq1  TTAAAGTTGAGTTCAATAAAGCTATGTCAGTAAACATTTAGACACAAGGG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTTGAGTTCAATAAAGCTATGTCAGTAAACATTTAGACACAAGGG  945

seq1  TTAAGAGAGGCGGGGTACAGAATTAAGATGCACTCTGCAGGGCATGGGTG  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGAGGCGGGGTACAGAATTAAGATGCACTCTGCAGGGCATGGGTG  995

seq1  TGGGCTTTTATTAAAAGGTGAACAGACTATAAACACAAGGCTAAGAGTAG  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTTTATTAAAAGGTGAACAGACTATAAACACAAGGCTAAGAGTAG  1045

seq1  AGATGTCTGTCGGGCTGGACAGATGGCTCAGTGGTTAAGAAAACTGGCTG  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCTGTCGGGCTGGACAGATGGCTCAGTGGTTAAGAAAACTGGCTG  1095

seq1  CTCTTCCAGAGGTCCTGAATTC  1109
      ||||||||||||||||||||||
seq2  CTCTTCCAGAGGTCCTGAATTC  1117