BAC Information

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BAC

Clone NameB6Ng01-264D07
Chromosome8 (Build37)
Map Location 52,444,771 - 52,610,334
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039954, LOC100039966, LOC667517
Downstream geneLOC623872, LOC100040220, LOC623935, 1190028D05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264D07.bB6Ng01-264D07.g
ACCGA068168GA068169
length1,0701,141
definitionB6Ng01-264D07.b B6Ng01-264D07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,609,257 - 52,610,334)(52,444,771 - 52,445,483)
sequence
gaattcactatgcctgttaaacattcaagtggagatgtcaaaattcagtt
atataagtaataaattcagccatgagttctgaggttgaagatggagactt
gggacttgccagcctatttaaagtaaggagaatggatgagattgcagatt
gagtaccgaggcagaaaaatgtccaaggactaaattctggggcatctctg
catttatatgtcagagagaaatagataacacataaaagaaagggaaatga
ttaagtaggattgagtgtacacaggacatgggtaggtcaaataagatgtg
atctgaggttaataacggaaaggtcactgtagacaccaagatgaacagtt
tttgtgtggatccggagatgaattctcaaagcagtgagttcaacagcaaa
tgcagaaggaatggaagaagctcatacagaaaatcgctctgagacttttc
ctctaatgttaacataaagaaggacatataaaacacagcaattaatatac
caaaaaaaaaacaatagagtagcatgattatgtgacatctgaaatatcta
ctaaaacttttaaaacagtgatgttaggagagcagaatgaactaattctt
gttagcaacacatactagaagtaaacactgtaataatttattcaattgaa
tggaaaaacaaacactaactttcgatacatgtgtaaggtgataagcagag
aagtttgagcataatttactttacaaataaaatatttgaaatttcaacac
tgtttcttaacttttccttctgtgacaatgatttctctgaaaacattatc
atgacacagaataattctgtcatgcattttaaattttacataaatattct
ctttgttgaagtttatcttatccattattggtacctaacatagtacaatt
taatgtttgcctatctagatttgaaattgggatggagggatttataatga
tgtttcttaaggactgtggtattttcaggtaaacaaaaaatatgaaaagt
atgtgtatagtttgaatagaatgtagttggctaataagatatcaggtttg
gaggcataaaaaatctagtg

gaattcagtgtttttccttcacccaatagagcatcatgttcccctctctc
cccctctatccccttctccttccaagtccctccctccctatctctcccca
tgtggttgctttcttccacccaagtgggactgaggtgacctcacttaggc
cctttagcttgttgaacttttcaggttctgtggactgtatcttgggtatt
ctgtacttttttaaaaatttaatttaaattaatttaatttttggctaata
cccacttattagtgagtacataccatgcatgtacttttggatctgagtta
cctcactcgcgtggtattttctagttccacccatttccatgaaaatctct
agatgttcgccttcttaatagctgagtagtatgccattgtgtaaataagc
acattttctgcattcattttctgtcatggaacatctgggttgtttccagc
ttctggttatcacaaacaaggcctctttgaacatagtggaacatgttctc
atgtggcatgatgagacatcttttgggtatattctcaaaagtggtattgc
tgcatcttcaggtacatctatttcctattttcggaggaacctccagattg
atttccagactggttgtaccagtttgcaatcccatcagaaatggaggcgt
gttcatctttttgctcatcctcaccaacatgtgctgacatctgaggtttt
gattcttagccattctgattggtgtaaggtggaatctcatggtcgttttg
atttgcatttctctgatcactaaggactttgaacatttctttaggtgctt
ctcagccatttgcgattcctctgttgtgaattcttggtttagttctatac
cccattttttgattgggttgttcggttttttggtagttagcttcttgagt
tctatatatattttagatattagccctctattggatgtagggttaatgag
attttaaatgttagagccaaggtgcttataactctaatagggaaattaag
atagatatgtgctttcatatgtagtcataagctagtactcatgtttgtac
tttgactgatcataaactatcataagtaaaatgtacagaatgttgtttga
actatgtttgcaaggcttggtaccgtcaggaatgactgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_52609257_52610334
seq2: B6Ng01-264D07.b_47_1116 (reverse)

seq1  CACTAGGATTTTTTTTATGCTTCCAAAAACTGAATATCTTA-TAGCAAAC  49
      ||||||    |||||||||| ||| ||| ||| |||||||| |||| |||
seq2  CACTAG---ATTTTTTATGCCTCC-AAACCTG-ATATCTTATTAGCCAAC  45

seq1  TACA-TCTATTCAAAACTATAACACATACTTTTCATATTTTTTGTTTACC  98
      |||| ||||||| ||||||| ||||||||||||||||||||||||||| |
seq2  TACATTCTATTC-AAACTAT-ACACATACTTTTCATATTTTTTGTTTA-C  92

seq1  CTGAAAAATACCACAGTCCTAAGAAAACATCATTATAAATCCCTCCATCC  148
      ||| |||||||||||||||| |  ||||||||||||||||||||||||||
seq2  CTG-AAAATACCACAGTCCTTAAGAAACATCATTATAAATCCCTCCATCC  141

seq1  CAATTTCAAATCTAGATAGGCAAACATTAAATTGTACTATGTTAGGTACC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCAAATCTAGATAGGCAAACATTAAATTGTACTATGTTAGGTACC  191

seq1  AATAATGGATAAGATAAACTTCAACAAAGAGAATATTTTATGTAAAATTT  248
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AATAATGGATAAGATAAACTTCAACAAAGAGAATA-TTTATGTAAAATTT  240

seq1  AAAATGCATGACAGAATTATTCTGTGTCATGATAATGTTTTCAGAGAAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCATGACAGAATTATTCTGTGTCATGATAATGTTTTCAGAGAAAT  290

seq1  CATTGTCACAGAAGGAAAAGTTAAGAAACAGTGTTGAAATTTCAAATATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCACAGAAGGAAAAGTTAAGAAACAGTGTTGAAATTTCAAATATT  340

seq1  TTATTTGTAAAGTAAATTATGCTCAAACTTCTCTGCTTATCACCTTACAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTAAAGTAAATTATGCTCAAACTTCTCTGCTTATCACCTTACAC  390

seq1  ATGTATCGAAAGTTAGTGTTTGTTTTTCCATTCAATTGAATAAATTATTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCGAAAGTTAGTGTTTGTTTTTCCATTCAATTGAATAAATTATTA  440

seq1  CAGTGTTTACTTCTAGTATGTGTTGCTAACAAGAATTAGTTCATTCTGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTTACTTCTAGTATGTGTTGCTAACAAGAATTAGTTCATTCTGCT  490

seq1  CTCCTAACATCACTGTTTTAAAAGTTTTAGTAGATATTTCAGATGTCACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAACATCACTGTTTTAAAAGTTTTAGTAGATATTTCAGATGTCACA  540

seq1  TAATCATGCTACTCTATTGTTTTTTTTTTGGTATATTAATTGCTGTGTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATGCTACTCTATTGTTTTTTTTTTGGTATATTAATTGCTGTGTTT  590

seq1  TATATGTCCTTCTTTATGTTAACATTAGAGGAAAAGTCTCAGAGCGATTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTCCTTCTTTATGTTAACATTAGAGGAAAAGTCTCAGAGCGATTT  640

seq1  TCTGTATGAGCTTCTTCCATTCCTTCTGCATTTGCTGTTGAACTCACTGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATGAGCTTCTTCCATTCCTTCTGCATTTGCTGTTGAACTCACTGC  690

seq1  TTTGAGAATTCATCTCCGGATCCACACAAAAACTGTTCATCTTGGTGTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAATTCATCTCCGGATCCACACAAAAACTGTTCATCTTGGTGTCT  740

seq1  ACAGTGACCTTTCCGTTATTAACCTCAGATCACATCTTATTTGACCTACC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGACCTTTCCGTTATTAACCTCAGATCACATCTTATTTGACCTACC  790

seq1  CATGTCCTGTGTACACTCAATCCTACTTAATCATTTCCCTTTCTTTTATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCTGTGTACACTCAATCCTACTTAATCATTTCCCTTTCTTTTATG  840

seq1  TGTTATCTATTTCTCTCTGACATATAAATGCAGAGATGCCCCAGAATTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCTATTTCTCTCTGACATATAAATGCAGAGATGCCCCAGAATTTA  890

seq1  GTCCTTGGACATTTTTCTGCCTCGGTACTCAATCTGCAATCTCATCCATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGGACATTTTTCTGCCTCGGTACTCAATCTGCAATCTCATCCATT  940

seq1  CTCCTTACTTTAAATAGGCTGGCAAGTCCCAAGTCTCCATCTTCAACCTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTACTTTAAATAGGCTGGCAAGTCCCAAGTCTCCATCTTCAACCTC  990

seq1  AGAACTCATGGCTGAATTTATTACTTATATAACTGAATTTTGACATCTCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCATGGCTGAATTTATTACTTATATAACTGAATTTTGACATCTCC  1040

seq1  ACTTGAATGTTTAACAGGCATAGTGAATTC  1078
      ||||||||||||||||||||||||||||||
seq2  ACTTGAATGTTTAACAGGCATAGTGAATTC  1070


seq1: chr8_52444771_52445483
seq2: B6Ng01-264D07.g_521_1205

seq1  TTATCACAAACAAGGCCTCTTTGAACATAGTGGAACATGTTCTCATGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACAAACAAGGCCTCTTTGAACATAGTGGAACATGTTCTCATGTGG  50

seq1  CATGATGAGACATCTTTTGGGTATATTCTCAAAAGTGGTATTGCTGCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGAGACATCTTTTGGGTATATTCTCAAAAGTGGTATTGCTGCATC  100

seq1  TTCAGGTACATCTATTTCCTATTTTCGGAGGAACCTCCAGATTGATTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTACATCTATTTCCTATTTTCGGAGGAACCTCCAGATTGATTTCC  150

seq1  AGACTGGTTGTACCAGTTTGCAATCCCATCAGAAATGGAGGCGTGTTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGTTGTACCAGTTTGCAATCCCATCAGAAATGGAGGCGTGTTCAT  200

seq1  CTTTTTGCTCATCCTCACCAACATGTGCTGACATCTGAGGTTTTGATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGCTCATCCTCACCAACATGTGCTGACATCTGAGGTTTTGATTCT  250

seq1  TAGCCATTCTGATTGGTGTAAGGTGGAATCTCATGGTCGTTTTGATTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATTCTGATTGGTGTAAGGTGGAATCTCATGGTCGTTTTGATTTGC  300

seq1  ATTTCTCTGATCACTAAGGACTTTGAACATTTCTTTAGGTGCTTCTCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTGATCACTAAGGACTTTGAACATTTCTTTAGGTGCTTCTCAGC  350

seq1  CATTTGCGATTCCTCTGTTGTGAATTCTTGGTTTAGTTCTATACCCCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCGATTCCTCTGTTGTGAATTCTTGGTTTAGTTCTATACCCCATT  400

seq1  TTTTGATTGGGTTGTTCGGTTTTTTGGTAGTTAGCTTCTTGAGTTCTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATTGGGTTGTTCGGTTTTTTGGTAGTTAGCTTCTTGAGTTCTATA  450

seq1  TATATTTTAGATATTAGCCCTCTATTGGATGTAGGGTTAATGAAGATTTT  500
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TATATTTTAGATATTAGCCCTCTATTGGATGTAGGGTTAATG-AGATTTT  499

seq1  AAATGTTAGAGCCAAGGTGCTTATAAACTCTAATAGGGAAAAATAAAAGA  550
      |||||||||||||||||||||||| ||||||||||||||||     ||||
seq2  AAATGTTAGAGCCAAGGTGCTTAT-AACTCTAATAGGGAAA---TTAAGA  545

seq1  TAAGAATATGTTGCTTTCCAATATGTAGTCATAAGCCTTAAGTAACTTCA  600
      ||   ||||| |||||||  ||||||||||||||||    ||||   |||
seq2  TA--GATATG-TGCTTTC--ATATGTAGTCATAAGC---TAGTA--CTCA  585

seq1  TGTTTGTACTTTGACTGATCATAAAACTAAATCATAAAGTAAAAGTGTTA  650
      |||||||||||||||||||||| |||||  ||||| |||||||| || ||
seq2  TGTTTGTACTTTGACTGATCAT-AAACT--ATCAT-AAGTAAAA-TG-TA  629

seq1  CAGGATGTGTTTTGAAACATAATGTTTGCAAAGGCTGTGTAACCAGTCAG  700
      ||| ||||  |||||   |  |||||||| ||||||  |||  | |||||
seq2  CAGAATGTTGTTTGA---ACTATGTTTGC-AAGGCTTGGTA--CCGTCAG  673

seq1  GAATGACATGAAA  713
      ||||||| |||||
seq2  GAATGAC-TGAAA  685


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