BAC Information

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BAC

Clone NameB6Ng01-264L23
Chromosome8 (Build37)
Map Location 11,076,165 - 11,224,365
singlet/doubletdoublet
Overlap geneCol4a1
Upstream geneMyo16, LOC100040008, LOC384782, LOC100040507, LOC665306, Irs2
Downstream geneCol4a2, Rab20, 0710008K08Rik, Cars2, Ing1, Ankrd10, 1700016D06Rik, EG665271, LOC665363, LOC624710, LOC665373, Arhgef7, 1700018L24Rik, LOC100040155
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264L23.bB6Ng01-264L23.g
ACCGA068572GA068573
length1,066613
definitionB6Ng01-264L23.b B6Ng01-264L23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,076,165 - 11,077,190)(11,223,755 - 11,224,365)
sequence
gaattcatttatatgctttatcaacaccagtaaagcagccctactgagtg
caggactgagccagcatctgacacaattaacacacatacacacacacaca
cacacacacacacacacatacacacacacatacacacacacacatacaca
cacacatacacacacacacacatacacacacacatacacacacacacaca
cacacacacacacacacacacacacaccgttctccacactgaactatgag
tctgagaagcctccagtgagccctgacagcacaacaccccagagtactca
caggagaagggacaacagcgtggtgtggatattcgttctgggtagctgag
aatggtctcccatcaatctcagttaccacaatgctaggaaattccccact
aaaatattattagcttgttaaagctttgtcaggtcttaggaaccccaaat
tagcatttcatcgaagcagagagatacggtctcctctgtaatgtgcgacg
gtgtccaggccctaagctgcagaaagttaattaattgctgtctgacatgc
taatgagtgttcagtgtcttctctccagctctgacttactcagagagcct
cgtgttggcccaagaagctctcggcttgcattcctgcatggtggactata
tgacaaaaatggacacaatttactttgaaaggaaatttttgttgaggcaa
agaataaaaaaatgtttaaaaaactataatttgcagtgtatccctgtggc
aagtcacttggtgtcctaaggcaaatgccagcctcacttgtgtttcgtgt
tgctgtcaacccaagagctagccagcttgcagctagactgggcccctccc
tgctcagtagccaaccctggagaagaaagccaggttctttcccccattag
caccaaacctccagggttcaacctgaaggaagagaatttcctggagggaa
aatggatatagcgcttgggaagggaaggggaaggaaggccaattgtgtga
acccagggtgtggggacacggcttgtgtgcatatgagaaacttggctctc
ccacactgtgtccctg
gaattcccatgtggactgaggagtccctgtgcacacttggaagagtcctg
attctttctgaacgtcaatatgctgacctccagtggctctctagggctta
actgggaagagatggggcctggaagcagagcgctttgtgttaccccaggg
cgctagggactgtgacattgctagagtggcctaatccacagccacccact
tacctgctgtgttctagctagcaggcatgaatcctggagaagcagaaagc
aaccgagagagagtctgtctgatggatgaaaatagtgttttgggttgttt
tgttttgtcttttggtttttatttatttatttaggttttatttggagggg
acgtgataaccaagaaatgacccagggctaccttactttttgttatggga
aattttctaactcttcagggcttgaatgcgaaacacttaaggaatccaga
gttgagtaaacattttagtcacgtggggccacaaatcttgaatatctctg
gctgagattctagatatgtgggtgagaaatgggaaacccaaggacttttc
cgtgcagggctttagggtgcctcagaggatggggagtggtgggctcctat
tgcagtgtactgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_11076165_11077190
seq2: B6Ng01-264L23.b_49_1114

seq1  GAATTCATTTATATGCTTTATCAACACCAGTAAAGCAGCCCTACTGAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTATATGCTTTATCAACACCAGTAAAGCAGCCCTACTGAGTG  50

seq1  CAGGACTGAGCCAGCATCTGACACAATTAACACACATACACACACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTGAGCCAGCATCTGACACAATTAACACACATACACACACACACA  100

seq1  CACACACACACACACACATACACACACACATACACACACACACATACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACATACACACACACATACACACACACACATACACA  150

seq1  CACACATACACACACACACACATACACACACACATACACACACACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATACACACACACACACATACACACACACATACACACACACACACA  200

seq1  CACACACACACACACACACACACACACCGTTCTCCACACTGAACTATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACCGTTCTCCACACTGAACTATGAG  250

seq1  TCTGAGAAGCCTCCAGTGAGCCCTGACAGCACAACACCCCAGAGTACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAAGCCTCCAGTGAGCCCTGACAGCACAACACCCCAGAGTACTCA  300

seq1  CAGGAGAAGGGACAACAGCGTGGTGTGGATATTCGTTCTGGGTAGCTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAAGGGACAACAGCGTGGTGTGGATATTCGTTCTGGGTAGCTGAG  350

seq1  AATGGTCTCCCATCAATCTCAGTTACCACAATGCTAGGAAATTCCCCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTCTCCCATCAATCTCAGTTACCACAATGCTAGGAAATTCCCCACT  400

seq1  AAAATATTATTAGCTTGTTAAAGCTTTGTCAGGTCTTAGGAACCCCAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTATTAGCTTGTTAAAGCTTTGTCAGGTCTTAGGAACCCCAAAT  450

seq1  TAGCATTTCATCGAAGCAGAGAGATACGGTCTCCTCTGTAATGTGCGACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTTCATCGAAGCAGAGAGATACGGTCTCCTCTGTAATGTGCGACG  500

seq1  GTGTCCAGGCCCTAAGCTGCAGAAAGTTAATTAATTGCTGTCTGACATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCAGGCCCTAAGCTGCAGAAAGTTAATTAATTGCTGTCTGACATGC  550

seq1  TAATGAGTGTTCAGTGTCTTCTCTCCAGCTCTGACTTACTCAGAGAGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGTGTTCAGTGTCTTCTCTCCAGCTCTGACTTACTCAGAGAGCCT  600

seq1  CGTGTTGGCCCAAGAAGCTCTCGGCTTGCATTCCTGCATGGTGGACTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTGGCCCAAGAAGCTCTCGGCTTGCATTCCTGCATGGTGGACTATA  650

seq1  TGACAAAAATGGACACAATTTACTTTGAAAGGAAATTTTTGTTGAGGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAAATGGACACAATTTACTTTGAAAGGAAATTTTTGTTGAGGCAA  700

seq1  AGAATAAAAAAATGTTTAAAAAACTATAATTTGCAGTGTATCCCTGTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAAAAATGTTTAAAAAACTATAATTTGCAGTGTATCCCTGTGGC  750

seq1  AAGTCACTTGGTGTCCT-AGGCAAATGCCAGCCTCACTTGTGTTTCGTGT  799
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAGTCACTTGGTGTCCTAAGGCAAATGCCAGCCTCACTTGTGTTTCGTGT  800

seq1  TGCTGTCAACCCAAGAGCTAGCCAGCTTGCAGCTAGACTGGGCCCCTCCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCAACCCAAGAGCTAGCCAGCTTGCAGCTAGACTGGGCCCCTCCC  850

seq1  TGCTCAGTAGCCAACCCTGGAGA--GAAGCCAGGTTCTTTCCCCCATTAG  897
      |||||||||||||||||||||||   ||||||||||||||||||||||||
seq2  TGCTCAGTAGCCAACCCTGGAGAAGAAAGCCAGGTTCTTTCCCCCATTAG  900

seq1  CA-CAAAC--TCAGGGTTC-ACCTG-AGGA--AGAATTTCCT-GAGGGAA  939
      || |||||   |||||||| ||||| ||||  |||||||||| |||||||
seq2  CACCAAACCTCCAGGGTTCAACCTGAAGGAAGAGAATTTCCTGGAGGGAA  950

seq1  AATG---ATA-AGCTTGGG-AGGGA--GGGGAGGAA-GCCAA---TGTG-  977
      ||||   |||  ||||||| |||||  ||| ||||| |||||   |||| 
seq2  AATGGATATAGCGCTTGGGAAGGGAAGGGGAAGGAAGGCCAATTGTGTGA  1000

seq1  ACCCAG---GTGGGGACA--GC---TGTGCATA----GAACTTG---CTC  1012
      ||||||   |||||||||  ||   ||||||||     ||||||   |||
seq2  ACCCAGGGTGTGGGGACACGGCTTGTGTGCATATGAGAAACTTGGCTCTC  1050

seq1  CCACAC--TGTCCCTG  1026
      ||||||  ||||||||
seq2  CCACACTGTGTCCCTG  1066

seq1: chr8_11223755_11224365
seq2: B6Ng01-264L23.g_68_680 (reverse)

seq1  CCAGTACACTGCAA-AGGAG-CCACCACTCCCCATCCTCTGAGGCACCCT  48
      |||||||||||||| ||||| |||||||||||||||||||||||||||||
seq2  CCAGTACACTGCAATAGGAGCCCACCACTCCCCATCCTCTGAGGCACCCT  50

seq1  GAAGCCCTGCACGGAAAAGTCCTTGGGTTTCCCATTTCTCACCCACATAT  98
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCTGCACGGAAAAGTCCTTGGGTTTCCCATTTCTCACCCACATAT  100

seq1  CTAGAATCTCAGCCAGAGATATTCAAGATTTGTGGCCCCACGTGACTAAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATCTCAGCCAGAGATATTCAAGATTTGTGGCCCCACGTGACTAAA  150

seq1  ATGTTTACTCAACTCTGGATTCCTTAAGTGTTTCGCATTCAAGCCCTGAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTACTCAACTCTGGATTCCTTAAGTGTTTCGCATTCAAGCCCTGAA  200

seq1  GAGTTAGAAAATTTCCCATAACAAAAAGTAAGGTAGCCCTGGGTCATTTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAGAAAATTTCCCATAACAAAAAGTAAGGTAGCCCTGGGTCATTTC  250

seq1  TTGGTTATCACGTCCCCTCCAAATAAAACCTAAATAAATAAATAAAAACC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTATCACGTCCCCTCCAAATAAAACCTAAATAAATAAATAAAAACC  300

seq1  AAAAGACAAAACAAAACAACCCAAAACACTATTTTCATCCATCAGACAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACAAAACAAAACAACCCAAAACACTATTTTCATCCATCAGACAGA  350

seq1  CTCTCTCTCGGTTGCTTTCTGCTTCTCCAGGATTCATGCCTGCTAGCTAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCGGTTGCTTTCTGCTTCTCCAGGATTCATGCCTGCTAGCTAG  400

seq1  AACACAGCAGGTAAGTGGGTGGCTGTGGATTAGGCCACTCTAGCAATGTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGCAGGTAAGTGGGTGGCTGTGGATTAGGCCACTCTAGCAATGTC  450

seq1  ACAGTCCCTAGCGCCCTGGGGTAACACAAAGCGCTCTGCTTCCAGGCCCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCCTAGCGCCCTGGGGTAACACAAAGCGCTCTGCTTCCAGGCCCC  500

seq1  ATCTCTTCCCAGTTAAGCCCTAGAGAGCCACTGGAGGTCAGCATATTGAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTCCCAGTTAAGCCCTAGAGAGCCACTGGAGGTCAGCATATTGAC  550

seq1  GTTCAGAAAGAATCAGGACTCTTCCAAGTGTGCACAGGGACTCCTCAGTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAAAGAATCAGGACTCTTCCAAGTGTGCACAGGGACTCCTCAGTC  600

seq1  CACATGGGAATTC  611
      |||||||||||||
seq2  CACATGGGAATTC  613