BAC Information

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BAC

Clone NameB6Ng01-266B08
Chromosome8 (Build37)
Map Location 107,600,403 - 107,747,177
singlet/doubletdoublet
Overlap geneEG13909, LOC667774, BC026374, LOC100042408, Cbfb
Upstream geneCdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31
Downstream geneD230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266B08.bB6Ng01-266B08.g
ACCGA069569GA069570
length1,030976
definitionB6Ng01-266B08.b B6Ng01-266B08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,600,403 - 107,601,436)(107,746,202 - 107,747,177)
sequence
gaattcatccattttaaattttgaatttgaattactgaggagggtaacta
tccccacataagtatcatttttctttcttttccgaaagtttgttttctgt
gtgtattttcaatcatgatgaatttgtaactctggacatgtaaggaaaaa
tcaaatacatacttcataccacttggataactgttagcctgtttttgttc
agagaaacctgtgtaaataagcacctagtagttagaaagtcagagccacg
gaagtagcctagttgctttatgttaattatttccttagaccctgccacct
ggcaaccacctcactgttttccaatgctgctggtcttgtctgacataact
caagaagaattgtttgggactagctctgtctgtgtaagactctgatgaga
cttacctatcagggactctcccgagtgaacaacgcagagccgggagattg
atgcaaaagcaagaggaatttattgtttcagtacactggggtcatcatgc
atccaaagttggagcaacaaccctaggcagcccattcagccagtttttat
acagttttcaggggtagactagagcaacagccactaagcacactgcgatt
agcagaacagtgtgacttttaaactgattggtcgctagggaatgggttag
caagagcttcctttatctgcaggtggccaacggttggtcagccttgagga
atgtgtctattgtactctgggcttccctcattggcggatggccaatggtc
agtccccactgtggtctttctgaagaatataattagcttctcccttccag
aggggagagtgcctctgagctccatgacttctctcttccaggaggagagg
atctggtgcaatttttcaagggttcagaactgaccgcttcatcttcacct
gatgttttttcagattaaaggagcagctcacttctgctccatgttgtgtt
cacacaaaaacggtttcctcctcacaactgatacacattctgagagtggg
tcagtattatgatacctttgtatagtaaag
gaattcaggatgttatctttgcttatttaaatgtgacccattcaaatttt
gtcctaagtaaaagaagctttgagctgggtatggcggtgcactcctttaa
tcccagcactcgggaggaagaggcaggcagatttctgagtttgaggcctg
tctggtctacaaagtgagttccaggaaagccaggttatacagagaaaccc
tgtctccataaacaaaaacaaaacaaacaaacaaaacaaaataagaagct
ttgaatagccgaaaagctattggcagaagcaacagaagcaaattccaggc
tagcctgatctacatagtgagtttcaggagatccaaggctacctagagat
cctgtctcaaaacaaaaacaaagtcatgaacaaacaaacaaacaaacaaa
caaacaaacaaacaaaccactcaatgaatattagcgaagaagcttaattc
cagaggatgcctttaaatgacaattttcctaaaataagggatgttcaaaa
atatgagaaagtaatcaatgaagactgtgttcaggaagataaataatcct
ggtatcctacaaattggattttgagggcagcctcagagaacagcagctaa
ttaatagcaaaacagatggactgataaatcccagttctaccttagctccg
tatcttgggcaaattagttcatttcttcaggcctgttatctgtttgtaaa
acaaccatgcacctacctcacagatctgttagtgggtctgcgcgcttttg
tgtctggcttatatgaaaacatttttaaatgtaatttacaaattacttga
tggaattgacaggagttactgtgtgcacataggaggagaggaagaggcga
gtcaaccctggggctgtagagatgacctacgttcagtccccagaactcaa
gcccagcacctcgcaaccacttgtaactccagctcctctctctctctctc
tctctctctctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_107600403_107601436
seq2: B6Ng01-266B08.b_46_1075

seq1  GAATTCATCCATTTTAAATTTTGAATTTGAATTACTGAGGAGGGTAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCATTTTAAATTTTGAATTTGAATTACTGAGGAGGGTAACTA  50

seq1  TCCCCACATAAGTATCATTTTTCTTTCTTTTCCGAAAGTTTGTTTTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACATAAGTATCATTTTTCTTTCTTTTCCGAAAGTTTGTTTTCTGT  100

seq1  GTGTATTTTCAATCATGATGAATTTGTAACTCTGGACATGTAAGGAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTTTCAATCATGATGAATTTGTAACTCTGGACATGTAAGGAAAAA  150

seq1  TCAAATACATACTTCATACCACTTGGATAACTGTTAGCCTGTTTTTGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATACATACTTCATACCACTTGGATAACTGTTAGCCTGTTTTTGTTC  200

seq1  AGAGAAACCTGTGTAAATAAGCACCTAGTAGTTAGAAAGTCAGAGCCACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACCTGTGTAAATAAGCACCTAGTAGTTAGAAAGTCAGAGCCACG  250

seq1  GAAGTAGCCTAGTTGCTTTATGTTAATTATTTCCTTAGACCCTGCCACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGCCTAGTTGCTTTATGTTAATTATTTCCTTAGACCCTGCCACCT  300

seq1  GGCAACCACCTCACTGTTTTCCAATGCTGCTGGTCTTGTCTGACATAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACCACCTCACTGTTTTCCAATGCTGCTGGTCTTGTCTGACATAACT  350

seq1  CAAGAAGAATTGTTTGGGACTAGCTCTGTCTGTGTAAGACTCTGATGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGAATTGTTTGGGACTAGCTCTGTCTGTGTAAGACTCTGATGAGA  400

seq1  CTTACCTATCAGGGACTCTCCCGAGTGAACAACGCAGAGCCGGGAGATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTATCAGGGACTCTCCCGAGTGAACAACGCAGAGCCGGGAGATTG  450

seq1  ATGCAAAAGCAAGAGGAATTTATTGTTTCAGTACACTGGGGTCATCATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAAGCAAGAGGAATTTATTGTTTCAGTACACTGGGGTCATCATGC  500

seq1  ATCCAAAGTTGGAGCAACAACCCTAGGCAGCCCATTCAGCCAGTTTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAAGTTGGAGCAACAACCCTAGGCAGCCCATTCAGCCAGTTTTTAT  550

seq1  ACAGTTTTCAGGGGTAGACTAGAGCAACAGCCACTAAGCACACTGCGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTCAGGGGTAGACTAGAGCAACAGCCACTAAGCACACTGCGATT  600

seq1  AGCAGAACAGTGTGACTTTTAAACTGATTGGTCGCTAGGGAATGGGTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAACAGTGTGACTTTTAAACTGATTGGTCGCTAGGGAATGGGTTAG  650

seq1  CAAGAGCTTCCTTTATCTGCAGGTGGCCAACGGTTGGTCAGCCTTGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCTTCCTTTATCTGCAGGTGGCCAACGGTTGGTCAGCCTTGAGGA  700

seq1  ATGTGTCTATTGTACTCTGGGCTTCCCTCATTGGCGGATGGCCAATGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCTATTGTACTCTGGGCTTCCCTCATTGGCGGATGGCCAATGGTC  750

seq1  AGTCCCCACTGTGGTCTTTCTGAAGAATATAATTAGCTTCTCCCTTCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCCACTGTGGTCTTTCTGAAGAATATAATTAGCTTCTCCCTTCCAG  800

seq1  AGGGGAGAGGTGCCTCTGAGCTCCATGACTTCTCTCTTCCAGGAGGAGAA  850
      |||||||| ||||||||||||||||||||||||||||||||||||||| |
seq2  AGGGGAGA-GTGCCTCTGAGCTCCATGACTTCTCTCTTCCAGGAGGAG-A  848

seq1  GGATCTGGTGCAATTTTTCAAGGGTTCAGAACTGACCGCTTCATCTTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGGTGCAATTTTTCAAGGGTTCAGAACTGACCGCTTCATCTTCAC  898

seq1  CTGATG-TTTTTCAGATT-AAGGAGCAGCTCACTTCTTGCTTCCATG-TG  947
      |||||| ||||||||||| ||||||||||||||||| ||| |||||| ||
seq2  CTGATGTTTTTTCAGATTAAAGGAGCAGCTCACTTC-TGC-TCCATGTTG  946

seq1  TGTTCACACAAAAAC-GTTTCCT-CTCACCAACTGATACACA-TCTGAGA  994
      ||||||||||||||| ||||||| |||| ||||||||||||| |||||| 
seq2  TGTTCACACAAAAACGGTTTCCTCCTCA-CAACTGATACACATTCTGAG-  994

seq1  AGTGGGGTCAGGTATTATTAATTACTTTGTATAGGTAAAG  1034
      ||| |||||| |||||| | ||  ||||||||| ||||||
seq2  AGT-GGGTCA-GTATTA-TGATACCTTTGTATA-GTAAAG  1030

seq1: chr8_107746202_107747177
seq2: B6Ng01-266B08.g_66_1041 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGCTGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGCTGGAG  50

seq1  TTACAAGTGGTTGCGAGGTGCTGGGCTTGAGTTCTGGGGACTGAACGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGTGGTTGCGAGGTGCTGGGCTTGAGTTCTGGGGACTGAACGTAG  100

seq1  GTCATCTCTACAGCCCCAGGGTTGACTCGCCTCTTCCTCTCCTCCTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTCTACAGCCCCAGGGTTGACTCGCCTCTTCCTCTCCTCCTATGT  150

seq1  GCACACAGTAACTCCTGTCAATTCCATCAAGTAATTTGTAAATTACATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAGTAACTCCTGTCAATTCCATCAAGTAATTTGTAAATTACATTT  200

seq1  AAAAATGTTTTCATATAAGCCAGACACAAAAGCGCGCAGACCCACTAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTTTTCATATAAGCCAGACACAAAAGCGCGCAGACCCACTAACA  250

seq1  GATCTGTGAGGTAGGTGCATGGTTGTTTTACAAACAGATAACAGGCCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTGAGGTAGGTGCATGGTTGTTTTACAAACAGATAACAGGCCTGA  300

seq1  AGAAATGAACTAATTTGCCCAAGATACGGAGCTAAGGTAGAACTGGGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGAACTAATTTGCCCAAGATACGGAGCTAAGGTAGAACTGGGATT  350

seq1  TATCAGTCCATCTGTTTTGCTATTAATTAGCTGCTGTTCTCTGAGGCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTCCATCTGTTTTGCTATTAATTAGCTGCTGTTCTCTGAGGCTGC  400

seq1  CCTCAAAATCCAATTTGTAGGATACCAGGATTATTTATCTTCCTGAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAATCCAATTTGTAGGATACCAGGATTATTTATCTTCCTGAACAC  450

seq1  AGTCTTCATTGATTACTTTCTCATATTTTTGAACATCCCTTATTTTAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCATTGATTACTTTCTCATATTTTTGAACATCCCTTATTTTAGGA  500

seq1  AAATTGTCATTTAAAGGCATCCTCTGGAATTAAGCTTCTTCGCTAATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTCATTTAAAGGCATCCTCTGGAATTAAGCTTCTTCGCTAATATT  550

seq1  CATTGAGTGGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGTGGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTCA  600

seq1  TGACTTTGTTTTTGTTTTGAGACAGGATCTCTAGGTAGCCTTGGATCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTGTTTTTGTTTTGAGACAGGATCTCTAGGTAGCCTTGGATCTCC  650

seq1  TGAAACTCACTATGTAGATCAGGCTAGCCTGGAATTTGCTTCTGTTGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTCACTATGTAGATCAGGCTAGCCTGGAATTTGCTTCTGTTGCTT  700

seq1  CTGCCAATAGCTTTTCGGCTATTCAAAGCTTCTTATTTTGTTTTGTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAATAGCTTTTCGGCTATTCAAAGCTTCTTATTTTGTTTTGTTTGT  750

seq1  TTGTTTTGTTTTTGTTTATGGAGACAGGGTTTCTCTGTATAACCTGGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTTGTTTATGGAGACAGGGTTTCTCTGTATAACCTGGCTT  800

seq1  TCCTGGAACTCACTTTGTAGACCAGACAGGCCTCAAACTCAGAAATCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAACTCACTTTGTAGACCAGACAGGCCTCAAACTCAGAAATCTGC  850

seq1  CTGCCTCTTCCTCCCGAGTGCTGGGATTAAAGGAGTGCACCGCCATACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTTCCTCCCGAGTGCTGGGATTAAAGGAGTGCACCGCCATACCC  900

seq1  AGCTCAAAGCTTCTTTTACTTAGGACAAAATTTGAATGGGTCACATTTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAAGCTTCTTTTACTTAGGACAAAATTTGAATGGGTCACATTTAA  950

seq1  ATAAGCAAAGATAACATCCTGAATTC  976
      ||||||||||||||||||||||||||
seq2  ATAAGCAAAGATAACATCCTGAATTC  976