BAC Information

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BAC

Clone NameB6Ng01-268I20
Chromosome8 (Build37)
Map Location 11,198,549 - 11,326,441
singlet/doubletdoublet
Overlap geneCol4a1, Col4a2
Upstream geneMyo16, LOC100040008, LOC384782, LOC100040507, LOC665306, Irs2
Downstream geneRab20, 0710008K08Rik, Cars2, Ing1, Ankrd10, 1700016D06Rik, EG665271, LOC665363, LOC624710, LOC665373, Arhgef7, 1700018L24Rik, LOC100040155
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268I20.bB6Ng01-268I20.g
ACCGA071379GA071380
length1,124631
definitionB6Ng01-268I20.b B6Ng01-268I20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,198,549 - 11,199,678)(11,325,811 - 11,326,441)
sequence
gaattcttaagaaatacacatttaaagaaattacacagaaggccttagta
gtcttaaaaacttttttttttttttttggagggtgggtacttttagtgaa
atgtcacttcaagcatagtggtccgagtctgccctcctgcgacctgtcca
ctccctgcaggggctgtgtcacagctcgagaggagctgggaagttgcctg
tgtgtgctcaggtgtgaaatgcctgccaggatgcaggatgaaggaggcta
acaaaggccttggctgtcgtacgggaagtcagtcattcagtctgtggtta
gtgttgcaaaccctgaaaatactccacgcagagcagaagcaagaagcgcc
aggcacagggctcattatcagacaccatgtttaggaatgggtttggcttt
ggctatctatacacctcctctggtttaggagtgagtttgaggaaagctgg
tgtttcacattcagtggcctgatgttggtaaccctgtgaaaggatagtac
agtttctccagagacgaaaaccaagtgcgctttatttaacaacaggctct
acgctagaacttgacctgcctaattgctgacacctatataaattactaat
atatatatatatttatttacttatttatttattttccatctaacctttgg
accatctttattccacaggaaagccatgacttccacaaaagcagctgcat
agtaccacacagggcataagtttgtgtttggggctgaaacgatggagttc
catgtagaaagtggaagaaaccagttcccttgactgttctctgcatagcc
cctcgagggacctgatgtggaaacactggacagtgggttggacagcactc
acatctggggtgacaggatgaagcgggctgtgggctgtgtggagagcgcc
tcacgcccctagcacctttgggtttcttatgggagttctcgccccagaca
tcagtgcactgggattgcaaaatgcaattcatcttttattggatcaagag
cgccaatttgggtatgtgccattatggaagctctcgctgcctgtctctct
cagcaacagaggccacgaagcggggtgtgttaggtacgcgattccttata
ggcacttatggatttcatagtgga
gaattcctttgccttctcacaggtaagcaaaagaaagcaaccctcctcac
tgccatctccgaacgcttgcctgtaggtgtgcaagctgccaggattaaga
tgtagatgctactggtgcccagacagcagtcccaggcagaccgaggtccc
caaggtagcaagggccccttgcagggtccctatcagagtcggaaaggcaa
agtccagggctgcaggctgacccaggactgggatgtgaagggggaattgg
aaccgtgtgcttgttcctgtcctcatttctgacctccaactaggggtggg
actgtttctagtttggtattttatgtattcagggaaggaatcatggctcc
tctgggctcagacagttttgtcagagaccacactgaatgggacaaagtgc
ctttttgggtaagctcccttgtccacaccacttggtggatgggtctcaga
aggagtgagtctggtggtccatattggatgtgattgggacactggtcctc
agtgagtgtgtgtttgtgagtgactgtgtatgtgtttgagtgtgagtgtg
tatgtatgtctgtatgtgtttatgtttgtgtatgtgtatgttcgtatgtg
tgtttacatgtgactatgtgtgtatttgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_11198549_11199678
seq2: B6Ng01-268I20.b_46_1169

seq1  GAATTCTTAAGAAATACACATTTAAAGAAATTACACAGAAGGCCTTAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGAAATACACATTTAAAGAAATTACACAGAAGGCCTTAGTA  50

seq1  GTCTTAAAAACTTTTTTTTTTTTTTTTGGAGGGTGGGTACTTTTAGTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAAAAACTTTTTTTTTTTTTTTTGGAGGGTGGGTACTTTTAGTGAA  100

seq1  ATGTCACTTCAAGCATAGTGGTCCGAGTCTGCCCTCCTGCGACCTGTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACTTCAAGCATAGTGGTCCGAGTCTGCCCTCCTGCGACCTGTCCA  150

seq1  CTCCCTGCAGGGGCTGTGTCACAGCTCGAGAGGAGCTGGGAAGTTGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGCAGGGGCTGTGTCACAGCTCGAGAGGAGCTGGGAAGTTGCCTG  200

seq1  TGTGTGCTCAGGTGTGAAATGCCTGCCAGGATGCAGGATGAAGGAGGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCTCAGGTGTGAAATGCCTGCCAGGATGCAGGATGAAGGAGGCTA  250

seq1  ACAAAGGCCTTGGCTGTCGTACGGGAAGTCAGTCATTCAGTCTGTGGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGCCTTGGCTGTCGTACGGGAAGTCAGTCATTCAGTCTGTGGTTA  300

seq1  GTGTTGCAAACCCTGAAAATACTCCACGCAGAGCAGAAGCAAGAAGCGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGCAAACCCTGAAAATACTCCACGCAGAGCAGAAGCAAGAAGCGCC  350

seq1  AGGCACAGGGCTCATTATCAGACACCATGTTTAGGAATGGGTTTGGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAGGGCTCATTATCAGACACCATGTTTAGGAATGGGTTTGGCTTT  400

seq1  GGCTATCTATACACCTCCTCTGGTTTAGGAGTGAGTTTGAGGAAAGCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATCTATACACCTCCTCTGGTTTAGGAGTGAGTTTGAGGAAAGCTGG  450

seq1  TGTTTCACATTCAGTGGCCTGATGTTGGTAACCCTGTGAAAGGATAGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCACATTCAGTGGCCTGATGTTGGTAACCCTGTGAAAGGATAGTAC  500

seq1  AGTTTCTCCAGAGACGAAAACCAAGTGCGCTTTATTTAACAACAGGCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTCCAGAGACGAAAACCAAGTGCGCTTTATTTAACAACAGGCTCT  550

seq1  ACGCTAGAACTTGACCTGCCTAATTGCTGACACCTATATAAATTACTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTAGAACTTGACCTGCCTAATTGCTGACACCTATATAAATTACTAAT  600

seq1  ATATATATATATTTATTTACTTATTTATTTATTTTCCATCTAACCTTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATTTATTTACTTATTTATTTATTTTCCATCTAACCTTTGG  650

seq1  ACCATCTTTATTCCACAGGAAAGCCATGACTTCCACAAAAGCAGCTGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTTTATTCCACAGGAAAGCCATGACTTCCACAAAAGCAGCTGCAT  700

seq1  AGTACCACACAGGGCATAAGTTTGTGTTTGGGGCTGAAACGATGGAGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCACACAGGGCATAAGTTTGTGTTTGGGGCTGAAACGATGGAGTTC  750

seq1  CATGTAGAAAGTGGAAGAAACCAGTTCCCTTGACTGTTCTCTGCATAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGAAAGTGGAAGAAACCAGTTCCCTTGACTGTTCTCTGCATAGCC  800

seq1  CCTCGAGGGACCTGATGTGGAAACACTGGACAGTGGGTTGGACAGCACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGAGGGACCTGATGTGGAAACACTGGACAGTGGGTTGGACAGCACTC  850

seq1  ACATCTGGGGTGACAGGATGAAGCGGGCTGTGGGCTGTGTGGAGAGCGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGGGGTGACAGGATGAAGCGGGCTGTGGGCTGTGTGGAGAGCGCC  900

seq1  TCACGCCCCTAGCACCTTTGGGTTTCTTAT-GGAGTTCTCGCCCCAGACA  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCACGCCCCTAGCACCTTTGGGTTTCTTATGGGAGTTCTCGCCCCAGACA  950

seq1  TCAGTGCACT-GGATTGCAAAATGCAATTCATCTTTTATTGGATCAGGAG  998
      |||||||||| ||||||||||||||||||||||||||||||||||| |||
seq2  TCAGTGCACTGGGATTGCAAAATGCAATTCATCTTTTATTGGATCAAGAG  1000

seq1  CGCCA--TTTGGTATGTGCCATTATGGAAAGCTCTCCGCTGCCTGTCCTT  1046
      |||||  || ||||||||||||||||| ||||||| |||||||||||  |
seq2  CGCCAATTTGGGTATGTGCCATTATGG-AAGCTCT-CGCTGCCTGTC--T  1046

seq1  CTCCTTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAA  1096
      |||  ||||| |||||||||| ||||||||||||||||||| ||||||| 
seq2  CTC--TCAGC-AACAGAGGCC-ACGAAGCGGGGTGTGTTAGGTACGCGAT  1092

seq1  TCCCTATAAGGCACTTTATGGTTTTCATAGTGGA  1130
      ||| ||| |||||| |||||| ||||||||||||
seq2  TCCTTAT-AGGCAC-TTATGGATTTCATAGTGGA  1124

seq1: chr8_11325811_11326441
seq2: B6Ng01-268I20.g_63_693 (reverse)

seq1  ACACAAATACACACATAGTCACATATAAACACACATACAAACATACACAT  50
      |||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  ACACAAATACACACATAGTCACATGTAAACACACATACGAACATACACAT  50

seq1  ACACAAACATAAACACATACAGACATACATACACACTCACACTCAAACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAACATAAACACATACAGACATACATACACACTCACACTCAAACAC  100

seq1  ATACACAGTCACTCACAAACACACACTCACTGAGGACCAGTGTCCCAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAGTCACTCACAAACACACACTCACTGAGGACCAGTGTCCCAATC  150

seq1  ACATCCAATATGGACCACCAGACTCACTCCTTCTGAGACCCATCCACCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCAATATGGACCACCAGACTCACTCCTTCTGAGACCCATCCACCAA  200

seq1  GTGGTGTGGACAAGGGAGCTTACCCAAAAAGGCACTTTGTCCCATTCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTGGACAAGGGAGCTTACCCAAAAAGGCACTTTGTCCCATTCAGT  250

seq1  GTGGTCTCTGACAAAACTGTCTGAGCCCAGAGGAGCCATGATTCCTTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTCTGACAAAACTGTCTGAGCCCAGAGGAGCCATGATTCCTTCCC  300

seq1  TGAATACATAAAATACCAAACTAGAAACAGTCCCACCCCTAGTTGGAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACATAAAATACCAAACTAGAAACAGTCCCACCCCTAGTTGGAGGT  350

seq1  CAGAAATGAGGACAGGAACAAGCACACGGTTCCAATTCCCCCTTCACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGAGGACAGGAACAAGCACACGGTTCCAATTCCCCCTTCACATC  400

seq1  CCAGTCCTGGGTCAGCCTGCAGCCCTGGACTTTGCCTTTCCGACTCTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCTGGGTCAGCCTGCAGCCCTGGACTTTGCCTTTCCGACTCTGAT  450

seq1  AGGGACCCTGCAAGGGGCCCTTGCTACCTTGGGGACCTCGGTCTGCCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACCCTGCAAGGGGCCCTTGCTACCTTGGGGACCTCGGTCTGCCTGG  500

seq1  GACTGCTGTCTGGGCACCAGTAGCATCTACATCTTAATCCTGGCAGCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTGTCTGGGCACCAGTAGCATCTACATCTTAATCCTGGCAGCTTG  550

seq1  CACACCTACAGGCAAGCGTTCGGAGATGGCAGTGAGGAGGGTTGCTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTACAGGCAAGCGTTCGGAGATGGCAGTGAGGAGGGTTGCTTTCT  600

seq1  TTTGCTTACCTGTGAGAAGGCAAAGGAATTC  631
      |||||||||||||||||||||||||||||||
seq2  TTTGCTTACCTGTGAGAAGGCAAAGGAATTC  631