BAC Information

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BAC

Clone NameB6Ng01-268K13
Chromosome8 (Build37)
Map Location 53,030,474 - 53,160,519
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667517, LOC623872
Downstream geneLOC100040220, LOC623935, 1190028D05Rik, LOC676688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268K13.bB6Ng01-268K13.g
ACCGA071459GA071460
length1,0911,139
definitionB6Ng01-268K13.b B6Ng01-268K13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,159,435 - 53,160,519)(53,030,474 - 53,031,618)
sequence
gaattctcatacataattttatagtaagaacatctggatttaaatatttt
ccactcttaatctctgtaatgtattattattgcttcttttatacttatga
aacaatctcacatacttggttatcaaaggtgaaacgttgtgacatttcca
cactttgtttcatttttgcttcacatctaaatacttgaaatccattagaa
ggacctgcatatggtggtgggataaaaatgtaataaaaaagaaaacaata
atgaatagggaagaggtgagaagggaattaagggaggaagaaagagaggg
aaaagaatgaaaatatataagataaagaaagaaagcagagagaaagaaga
aaggacagagagaagggagagagggagaaagaaacaagaggaagagggag
agagaagggggaggaagaaacaattgttttgttttgtttatttcagaaca
tttggatggtttcccaagttgaattggtgtagcaagctaaggagaaaccc
accatcttttgtttgacataaggacagtataaatcataaatcacattatg
gaaaactatcattacactgatacagaataaagtaaaattgtagacaggac
ctttatgtaattttcacttatacacattgcttcagtttggaaacacacag
agagagagagagagagagagagagagagagagagagagagagagagagag
agagagagacagagacagagagagacagagacagagacagagagagacag
agacacagagagagacagagacacagagagagagagacagagagacagag
agatacagagacagagaggcacaaagagagacacacagagacagatacac
agagacatagagagacacacagagagggtatcctataacggtgcaacaat
gccatatctgtacagatagtaatgagtaaagtgcagtgttgtaaataatt
tgcacataacacgttcctgaacactgaacttttttatttgggttacaaaa
ggtgcatagtggagacctttcctcccaatatagtgctgacctacacataa
gatttctttccttataatttatataattttagggagttttt

gaattcagaagagaagaatctaaatgtctgagacacacttaaagacatgt
tcaaagtccttagtcatcagagaaatgcaaatcaaaatgactctgagatt
ccaatctataacaatcagaatgtctaagatcaaaaattcgagtgaaagta
catgctggtgaagatgtggagaaagagggacactcctccattgctgttgg
gattgcaaactggtttagacactctggaactcaatctggcatttccacag
aaaattggaaatagtgttacctgaagacccagctatatcagtcctggaca
tatactcaaaagatgccccactataccacaaggatattttctacactata
ttaagtattttcttaagttaaactgcatagtgagaaaatgcttaacatat
ttgcaagtcttaaaaacagatttatattcaaaataggttgactgaatttt
acattgctggcttttgtattgaataatttgggcagtttttgtttgtttgt
ttgtttgtttttttgttaagttagtgagaattctatccaaggtcttttgc
atgctgggctaacatgcaatcaatcagaaatactacttttgagtctttat
cttttgttttctttccttttctttcttaaaaatcaaaattaagccgggca
gtggtggcacacgcctttaatcccagcacttgggaggcagaggcaggcag
atttctgagtttgaggccagcctggtctacaaagtgagttccaggacagc
caggctacacagagaaaccctgacttgaaaatgaaaatgaaaacgaaaaa
cgaaaacgaaaaacgaaaaaccaaaaaaccaaaaacaaaacaaaacaaaa
atcaaattaggtatctgagtgcaattattgatcacatatttctcattttg
tcttgtttctaactttggagagaaaatcatattaatctctgaagacttga
taaatgaaaatattaatagttgcttctatattcctgtctcaatctaatat
gtaaattaaattaagctctaagttattataattttgttgtattctaattt
ccatttttgtgaattatgaaaaacatactgttaattttaatgggaatata
tgaaatatttattatgtttgaaggaaaaatattttatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_53159435_53160519
seq2: B6Ng01-268K13.b_46_1136 (reverse)

seq1  AAAAACTCCCT-AAATTAT-TAAATTAT-ATGAAAGAAATC-TAAGTGTA  46
      ||||||||||| ||||||| |||||||| | |||||||||| || |||||
seq2  AAAAACTCCCTAAAATTATATAAATTATAAGGAAAGAAATCTTATGTGTA  50

seq1  -GTCAGCA-TATAATGGGA-GAAAGGTCTCCACTATGCACCTTTTGTAA-  92
       ||||||| |||| ||||| ||||||||||||||||||||||||||||| 
seq2  GGTCAGCACTATATTGGGAGGAAAGGTCTCCACTATGCACCTTTTGTAAC  100

seq1  CCAAAT-AAAAAGTTCAGTG-TCAGGAACGTGTTATGTGCAAATTATTTA  140
      |||||| ||||||||||||| |||||||||||||||||||||||||||| 
seq2  CCAAATAAAAAAGTTCAGTGTTCAGGAACGTGTTATGTGCAAATTATTT-  149

seq1  ACAACACTGCAACTTTACTCATTACTATCTGTAACAGATATTGGCATTGT  190
      |||||||||| ||||||||||||||||||||| ||||||| |||||||||
seq2  ACAACACTGC-ACTTTACTCATTACTATCTGT-ACAGATA-TGGCATTGT  196

seq1  TGCACCGTTATAGGATACCCTCTCTGTGTGTCTCTCTATGTCTCTGTGTA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCGTTATAGGATACCCTCTCTGTGTGTCTCTCTATGTCTCTGTGTA  246

seq1  TCTGTCTCTGTGTGTCTCTCTTTGTGCCTCTCTGTCTCTGTATCTCTCTG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTGTGTGTCTCTCTTTGTGCCTCTCTGTCTCTGTATCTCTCTG  296

seq1  TCTCTCTGTCTCTCTCTCTCTGTGTCTCTGTCTCTCTCTGTGTCTCTGTC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGTCTCTCTCTCTCTGTGTCTCTGTCTCTCTCTGTGTCTCTGTC  346

seq1  TCTCTCTGTCTCTGTCTCTGTCTCTCTCTGTCTCTGTCTCTCTCTCTCTC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGTCTCTGTCTCTGTCTCTCTCTGTCTCTGTCTCTCTCTCTCTC  396

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTG  446

seq1  TGTTTCCAAACTGAAGCAATGTGTATAAGTGAAAATTACATAAAGGTCCT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCAAACTGAAGCAATGTGTATAAGTGAAAATTACATAAAGGTCCT  496

seq1  GTCTACAATTTTACTTTATTCTGTATCAGTGTAATGATAGTTTTCCATAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAATTTTACTTTATTCTGTATCAGTGTAATGATAGTTTTCCATAA  546

seq1  TGTGATTTATGATTTATACTGTCCTTATGTCAAACAAAAGATGGTGGGTT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTATGATTTATACTGTCCTTATGTCAAACAAAAGATGGTGGGTT  596

seq1  TCTCCTTAGCTTGCTACACCAATTCAACTTGGGAAACCATCCAAATGTTC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTAGCTTGCTACACCAATTCAACTTGGGAAACCATCCAAATGTTC  646

seq1  TGAAATAAACAAAACAAAACAATTGTTTCTTCCTCCCCCTTCTCTCTCCC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAAACAAAACAAAACAATTGTTTCTTCCTCCCCCTTCTCTCTCCC  696

seq1  TCTTCCTCTTGTTTCTTTCTCCCTCTCTCCCTTCTCTCTGTCCTTTCTTC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCTTGTTTCTTTCTCCCTCTCTCCCTTCTCTCTGTCCTTTCTTC  746

seq1  TTTCTCTCTGCTTTCTTTCTTTATCTTATATATTTTCATTCTTTTCCCTC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCTGCTTTCTTTCTTTATCTTATATATTTTCATTCTTTTCCCTC  796

seq1  TCTTTCTTCCTCCCTTAATTCCCTTCTCACCTCTTCCCTATTCATTATTG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTCCTCCCTTAATTCCCTTCTCACCTCTTCCCTATTCATTATTG  846

seq1  TTTTCTTTTTTATTACATTTTTATCCCACCACCATATGCAGGTCCTTCTA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTTTATTACATTTTTATCCCACCACCATATGCAGGTCCTTCTA  896

seq1  ATGGATTTCAAGTATTTAGATGTGAAGCAAAAATGAAACAAAGTGTGGAA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTTCAAGTATTTAGATGTGAAGCAAAAATGAAACAAAGTGTGGAA  946

seq1  ATGTCACAACGTTTCACCTTTGATAACCAAGTATGTGAGATTGTTTCATA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACAACGTTTCACCTTTGATAACCAAGTATGTGAGATTGTTTCATA  996

seq1  AGTATAAAAGAAGCAATAATAATACATTACAGAGATTAAGAGTGGAAAAT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAAAGAAGCAATAATAATACATTACAGAGATTAAGAGTGGAAAAT  1046

seq1  ATTTAAATCCAGATGTTCTTACTATAAAATTATGTATGAGAATTC  1085
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATCCAGATGTTCTTACTATAAAATTATGTATGAGAATTC  1091


seq1: chr8_53030474_53031618
seq2: B6Ng01-268K13.g_66_1204

seq1  GAATTCAGAAGAGAAGAATCTAAATGTCTGAGACACACTTAAAGACATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGAGAAGAATCTAAATGTCTGAGACACACTTAAAGACATGT  50

seq1  TCAAAGTCCTTAGTCATCAGAGAAATGCAAATCAAAATGACTCTGAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTCCTTAGTCATCAGAGAAATGCAAATCAAAATGACTCTGAGATT  100

seq1  CCAATCTATAACAATCAGAATGTCTAAGATCAAAAATTCGAGTGAAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTATAACAATCAGAATGTCTAAGATCAAAAATTCGAGTGAAAGTA  150

seq1  CATGCTGGTGAAGATGTGGAGAAAGAGGGACACTCCTCCATTGCTGTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGGTGAAGATGTGGAGAAAGAGGGACACTCCTCCATTGCTGTTGG  200

seq1  GATTGCAAACTGGTTTAGACACTCTGGAACTCAATCTGGCATTTCCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCAAACTGGTTTAGACACTCTGGAACTCAATCTGGCATTTCCACAG  250

seq1  AAAATTGGAAATAGTGTTACCTGAAGACCCAGCTATATCAGTCCTGGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGGAAATAGTGTTACCTGAAGACCCAGCTATATCAGTCCTGGACA  300

seq1  TATACTCAAAAGATGCCCCACTATACCACAAGGATATTTTCTACACTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTCAAAAGATGCCCCACTATACCACAAGGATATTTTCTACACTATA  350

seq1  TTAAGTATTTTCTTAAGTTAAACTGCATAGTGAGAAAATGCTTAACATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTATTTTCTTAAGTTAAACTGCATAGTGAGAAAATGCTTAACATAT  400

seq1  TTGCAAGTCTTAAAAACAGATTTATATTCAAAATAGGTTGACTGAATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGTCTTAAAAACAGATTTATATTCAAAATAGGTTGACTGAATTTT  450

seq1  ACATTGCTGGCTTTTGTATTGAATAATTTGGGCAGTTTTTGTTTGTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCTGGCTTTTGTATTGAATAATTTGGGCAGTTTTTGTTTGTTTGT  500

seq1  TTGTTTGTTTTTTTGTTAAGTTAGTGAGAATTCTATCCAAGGTCTTTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTTTTTGTTAAGTTAGTGAGAATTCTATCCAAGGTCTTTTGC  550

seq1  ATGCTGGGCTAACATGCAATCAATCAGAAATACTACTTTTGAGTCTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGGCTAACATGCAATCAATCAGAAATACTACTTTTGAGTCTTTAT  600

seq1  CTTTTGTTTTCTTTCCTTTTCTTTCTTAAAAATCAAAATTAAGCCGGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTTTCTTTCCTTTTCTTTCTTAAAAATCAAAATTAAGCCGGGCA  650

seq1  GTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAG  700

seq1  ATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGC  750

seq1  CAGGGCTACACAGAGAAACCCTGACTTGAAAAATGAAAAATGAAAAACGA  800
      || ||||||||||||||||||||||||| |||||| |||||| |||||||
seq2  CA-GGCTACACAGAGAAACCCTGACTTG-AAAATG-AAAATG-AAAACGA  796

seq1  AAAACGAAAAACGAAAAACGAAAAACCAAAAAACCAAAAACAAAACAAAA  850
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACG-AAAACGAAAAACGAAAAACCAAAAAACCAAAAACAAAACAAAA  845

seq1  CAAAAATCAAAATTAGGTATCTGAGTGCAATTATTGATCACATATTTCTC  900
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATC-AAATTAGGTATCTGAGTGCAATTATTGATCACATATTTCTC  894

seq1  ATTTTGTCTTGTTTCTAACTTTGGAGAGAAAATCATATTAATCTCTGAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTCTTGTTTCTAACTTTGGAGAGAAAATCATATTAATCTCTGAAG  944

seq1  ACTTGATAAATG-AAATATTAATAGTTGCTTCTATAATTCCTGTCTCAAT  999
      |||||||||||| |||||||||||||||||||||| ||||||||||||||
seq2  ACTTGATAAATGAAAATATTAATAGTTGCTTCTAT-ATTCCTGTCTCAAT  993

seq1  CTAATATGTAAATTAAAATTAAGCTCTAAGTTATTATAATTTTTGTTGTA  1049
      |||||||||||||| |||||||||||||||||||||||| ||||||||||
seq2  CTAATATGTAAATT-AAATTAAGCTCTAAGTTATTATAA-TTTTGTTGTA  1041

seq1  TTCCTAATTTTCCATTTTGTGAAATATGAAAAACATAACTGTTAAATTTT  1099
      || ||||||| |  ||||||||| |||||||||||| |||||| ||||||
seq2  TT-CTAATTTCCATTTTTGTGAATTATGAAAAACAT-ACTGTT-AATTTT  1088

seq1  AAT-GGAATATATGAAATATTTA-TATGTTTGA--GGAAAATA-TTTATG  1144
      ||| ||||||||||||||||||| |||||||||  | |||||| ||||||
seq2  AATGGGAATATATGAAATATTTATTATGTTTGAAGGAAAAATATTTTATG  1138

seq1  A  1145
      |
seq2  A  1139


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